[vtkusers] Issuings running make in my VTK-build directory
Andrew Lam
werdna.mal222 at gmail.com
Wed Apr 12 13:57:20 EDT 2017
Cory,
I'm sorry I don't know what you mean by local scratch space.
Thanks,
Andrew
On Wed, Apr 12, 2017 at 10:55 AM, Cory Quammen <cory.quammen at kitware.com>
wrote:
> > I'm currently building on my school's servers.
>
> Is there local scratch space on which you can build software on that
> server? My guess is you are building in a home directory that is on an
> AFS or NFS or some other network file system, and that is causing you
> problems.
>
> Thanks,
> Cory
>
> > Thanks,
> > Andrew
> >
> >
> > On Wed, Apr 12, 2017 at 10:50 AM, Andrew Lam <werdna.mal222 at gmail.com>
> > wrote:
> >>
> >> Cory,
> >>
> >> I'm currently building on my school's servers.
> >>
> >> Thanks,
> >> Andrew
> >>
> >> On Wed, Apr 12, 2017 at 10:47 AM, Cory Quammen <
> cory.quammen at kitware.com>
> >> wrote:
> >>>
> >>> Andrew,
> >>>
> >>> Are you building on a networked file system of some sort? I've run
> >>> into issues long ago building software before when the file system and
> >>> computer have different ideas of what time it is.
> >>>
> >>> - Cory
> >>>
> >>> On Wed, Apr 12, 2017 at 1:29 PM, Andrew Lam <werdna.mal222 at gmail.com>
> >>> wrote:
> >>> > Hi Andy,
> >>> >
> >>> > It's still not working. I made a fresh build directory and ran
> through
> >>> > the
> >>> > motions again. It still has the same issue. I've attached my
> >>> > CMakeCache.txt
> >>> > file from my build directory. Please let me know if you see anything
> or
> >>> > if
> >>> > there is any other information that you might think would help.
> >>> >
> >>> > Thanks,
> >>> > Andrew
> >>> >
> >>> > On Wed, Apr 12, 2017 at 8:43 AM, Andy Bauer <andy.bauer at kitware.com>
> >>> > wrote:
> >>> >>
> >>> >> Hi Andrew,
> >>> >>
> >>> >> This should compile for you now. If it doesn't, please let us know
> and
> >>> >> we
> >>> >> can see how to get it working for you. If you do have problems I
> >>> >> recommend
> >>> >> attaching your CMakeCache.txt file from your build directory so it's
> >>> >> easier
> >>> >> for others to inspect what you did.
> >>> >>
> >>> >> Best,
> >>> >> Andy
> >>> >>
> >>> >> On Wed, Apr 12, 2017 at 11:12 AM, Andrew Lam <
> werdna.mal222 at gmail.com>
> >>> >> wrote:
> >>> >>>
> >>> >>> Ok Andy I can see it now thanks,
> >>> >>>
> >>> >>> my variables are set to
> >>> >>>
> >>> >>> Module_vtkParallelMPI4Py *OFF
> >>> >>> PYTHON_EXECUTABLE */bin/python2
> >>> >>> PYTHON_EXTRA_LIBS *
> >>> >>> PYTHON_INCLUDE_DIR */usr/include/python2.7
> >>> >>> PYTHON_LIBRARY *//lib64/libpython2.7.so
> >>> >>> PYTHON_UTIL_LIBRARY */usr/lib64/libutil.so
> >>> >>> VTK_ENABLE_VTKPYTHON *ON
> >>> >>>
> >>> >>> after I set VTK_WRAP_PYTHON CMake variable to ON
> >>> >>>
> >>> >>> it seems ok to me, but let me know if they're wrong.
> >>> >>>
> >>> >>> Thanks,
> >>> >>> Andrew
> >>> >>>
> >>> >>> On Tue, Apr 11, 2017 at 3:30 PM, Andrew Lam <
> werdna.mal222 at gmail.com>
> >>> >>> wrote:
> >>> >>>>
> >>> >>>> Hi, my name is Andrew. I'm currently in a class that requires us
> to
> >>> >>>> install VTK.
> >>> >>>>
> >>> >>>> I have an issue running make in my VTK-build directory. I get a
> >>> >>>> bunch of
> >>> >>>> clock skew issues that pop up that won't go away after calling
> >>> >>>>
> >>> >>>> $ touch *
> >>> >>>>
> >>> >>>> then it will print out
> >>> >>>>
> >>> >>>> make[2]: *** [Wrapping/Python/vtkAngularPeriodicDataArrayPyt
> hon.cxx]
> >>> >>>> Error 1
> >>> >>>> make[1]: ***
> >>> >>>> [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
> >>> >>>> Error 2
> >>> >>>>
> >>> >>>> it will then run to about 32% and then end printing
> >>> >>>>
> >>> >>>> make: *** [all] Error 2
> >>> >>>>
> >>> >>>> I'm using python 2.7, VTK 7.1.1, cmake 3.7.2
> >>> >>>> I'm also going to include the output of the make call. Please let
> me
> >>> >>>> know if you have any suggestions or if you need any more
> information
> >>> >>>> to
> >>> >>>> understand the issue.
> >>> >>>>
> >>> >>>> [ 0%] Built target kwiml_test
> >>> >>>> [ 0%] Built target vtksys
> >>> >>>> [ 1%] Built target vtkWrappingTools
> >>> >>>> [ 1%] Built target vtkalglib
> >>> >>>> [ 1%] Built target vtkexpat
> >>> >>>> [ 2%] Built target vtkzlib
> >>> >>>> [ 2%] Built target vtkDICOMParser
> >>> >>>> [ 2%] Built target vtkEncodeString
> >>> >>>> [ 2%] Built target vtkjpeg
> >>> >>>> [ 2%] Built target vtkHashSource
> >>> >>>> [ 2%] Built target vtkglew
> >>> >>>> [ 2%] Built target H5make_libsettings
> >>> >>>> [ 2%] Built target H5detect
> >>> >>>> [ 2%] Built target vtkWrapTcl
> >>> >>>> [ 2%] Built target vtkParseJava
> >>> >>>> [ 2%] Built target vtkWrapPython
> >>> >>>> [ 2%] Built target vtkWrapPythonInit
> >>> >>>> [ 2%] Built target vtkWrapTclInit
> >>> >>>> [ 2%] Built target vtkWrapJava
> >>> >>>> [ 2%] Built target vtkjsoncpp
> >>> >>>> [ 2%] Built target verdict
> >>> >>>> [ 2%] Built target vtksqlite
> >>> >>>> [ 2%] Built target vtkoggtheora
> >>> >>>> [ 2%] Built target vtkWrapHierarchy
> >>> >>>> [ 4%] Built target vtkproj4
> >>> >>>> [ 4%] Built target vtkfreetype
> >>> >>>> [ 5%] Built target vtklibxml2
> >>> >>>> [ 5%] Built target vtkpng
> >>> >>>> [ 5%] Built target vtkmetaio
> >>> >>>> [ 5%] Built target vtkgl2ps
> >>> >>>> [ 5%] Built target vtktiff
> >>> >>>> [ 20%] Built target vtkCommonCore
> >>> >>>> [ 26%] Built target VTKData
> >>> >>>> [ 28%] Built target vtkCommonSystem
> >>> >>>> [ 29%] Built target vtkCommonMath
> >>> >>>> [ 29%] Built target vtkhdf5
> >>> >>>> [ 29%] Built target vtkWrappingPythonCore
> >>> >>>> [ 29%] Built target vtkLocalExample
> >>> >>>> [ 29%] Built target vtkCommonMisc
> >>> >>>> [ 29%] Built target vtkCommonTransforms
> >>> >>>> [ 29%] Built target vtkCommonSystemCxxTests
> >>> >>>> [ 29%] Python Wrapping - generating vtkAbstractArrayPython.cxx
> >>> >>>> [ 29%] Built target vtkhdf5_hl
> >>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
> >>> >>>> --help print this help message
> >>> >>>> --version print the VTK version
> >>> >>>> -o <file> the output file
> >>> >>>> -I <dir> add an include directory
> >>> >>>> -D <macro[=def]> define a preprocessor macro
> >>> >>>> -U <macro> undefine a preprocessor macro
> >>> >>>> @<file> read arguments from a file
> >>> >>>> --hints <file> the hints file to use
> >>> >>>> --types <file> the type hierarchy file to use
> >>> >>>> --concrete force concrete class (ignored, deprecated)
> >>> >>>> --abstract force abstract class (ignored, deprecated)
> >>> >>>> --vtkobject vtkObjectBase-derived class (ignored,
> >>> >>>> deprecated)
> >>> >>>> --special non-vtkObjectBase class (ignored, deprecated)
> >>> >>>> make[2]: *** [Wrapping/Python/vtkAbstractArrayPython.cxx] Error 1
> >>> >>>> make[2]: *** Waiting for unfinished jobs....
> >>> >>>> [ 29%] Built target vtkpython
> >>> >>>> [ 29%] Python Wrapping - generating
> >>> >>>> vtkAngularPeriodicDataArrayPython.cxx
> >>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
> >>> >>>> --help print this help message
> >>> >>>> --version print the VTK version
> >>> >>>> -o <file> the output file
> >>> >>>> -I <dir> add an include directory
> >>> >>>> -D <macro[=def]> define a preprocessor macro
> >>> >>>> -U <macro> undefine a preprocessor macro
> >>> >>>> @<file> read arguments from a file
> >>> >>>> --hints <file> the hints file to use
> >>> >>>> --types <file> the type hierarchy file to use
> >>> >>>> --concrete force concrete class (ignored, deprecated)
> >>> >>>> --abstract force abstract class (ignored, deprecated)
> >>> >>>> --vtkobject vtkObjectBase-derived class (ignored,
> >>> >>>> deprecated)
> >>> >>>> --special non-vtkObjectBase class (ignored, deprecated)
> >>> >>>> make[2]: *** [Wrapping/Python/vtkAngularPeriodicDataArrayPyt
> hon.cxx]
> >>> >>>> Error 1
> >>> >>>> make[1]: ***
> >>> >>>> [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
> >>> >>>> Error 2
> >>> >>>> make[1]: *** Waiting for unfinished jobs....
> >>> >>>> Scanning dependencies of target vtkCommonMathCxxTests
> >>> >>>> make[2]: Warning: File
> >>> >>>>
> >>> >>>> `Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/
> depend.make'
> >>> >>>> has modification time 0.041 s in the future
> >>> >>>> [ 29%] Building CXX object
> >>> >>>>
> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/
> vtkCommonMathCxxTests.cxx.o
> >>> >>>> [ 29%] Building CXX object
> >>> >>>>
> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/
> TestAmoebaMinimizer.cxx.o
> >>> >>>> [ 30%] Built target vtkCommonCoreCxxTests
> >>> >>>> [ 30%] Building CXX object
> >>> >>>>
> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/
> TestMatrix3x3.cxx.o
> >>> >>>> [ 30%] Building CXX object
> >>> >>>>
> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/
> TestPolynomialSolversUnivariate.cxx.o
> >>> >>>> [ 30%] Building CXX object
> >>> >>>>
> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/
> TestQuaternion.cxx.o
> >>> >>>> [ 30%] Linking CXX executable ../../../../bin/
> vtkCommonMathCxxTests
> >>> >>>> [ 32%] Built target vtkCommonDataModel
> >>> >>>> make[2]: warning: Clock skew detected. Your build may be
> >>> >>>> incomplete.
> >>> >>>> [ 32%] Built target vtkCommonMathCxxTests
> >>> >>>> make: *** [all] Error 2
> >>> >>>>
> >>> >>>
> >>> >>>
> >>> >>> _______________________________________________
> >>> >>> Powered by www.kitware.com
> >>> >>>
> >>> >>> Visit other Kitware open-source projects at
> >>> >>> http://www.kitware.com/opensource/opensource.html
> >>> >>>
> >>> >>> Please keep messages on-topic and check the VTK FAQ at:
> >>> >>> http://www.vtk.org/Wiki/VTK_FAQ
> >>> >>>
> >>> >>> Search the list archives at: http://markmail.org/search/?q=
> vtkusers
> >>> >>>
> >>> >>> Follow this link to subscribe/unsubscribe:
> >>> >>> http://public.kitware.com/mailman/listinfo/vtkusers
> >>> >>>
> >>> >>
> >>> >
> >>> >
> >>> > _______________________________________________
> >>> > Powered by www.kitware.com
> >>> >
> >>> > Visit other Kitware open-source projects at
> >>> > http://www.kitware.com/opensource/opensource.html
> >>> >
> >>> > Please keep messages on-topic and check the VTK FAQ at:
> >>> > http://www.vtk.org/Wiki/VTK_FAQ
> >>> >
> >>> > Search the list archives at: http://markmail.org/search/?q=vtkusers
> >>> >
> >>> > Follow this link to subscribe/unsubscribe:
> >>> > http://public.kitware.com/mailman/listinfo/vtkusers
> >>> >
> >>>
> >>>
> >>>
> >>> --
> >>> Cory Quammen
> >>> Staff R&D Engineer
> >>> Kitware, Inc.
> >>
> >>
> >
> >
> > _______________________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the VTK FAQ at:
> > http://www.vtk.org/Wiki/VTK_FAQ
> >
> > Search the list archives at: http://markmail.org/search/?q=vtkusers
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/vtkusers
> >
>
>
>
> --
> Cory Quammen
> Staff R&D Engineer
> Kitware, Inc.
>
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