[vtkusers] Issuings running make in my VTK-build directory
Cory Quammen
cory.quammen at kitware.com
Wed Apr 12 13:55:18 EDT 2017
> I'm currently building on my school's servers.
Is there local scratch space on which you can build software on that
server? My guess is you are building in a home directory that is on an
AFS or NFS or some other network file system, and that is causing you
problems.
Thanks,
Cory
> Thanks,
> Andrew
>
>
> On Wed, Apr 12, 2017 at 10:50 AM, Andrew Lam <werdna.mal222 at gmail.com>
> wrote:
>>
>> Cory,
>>
>> I'm currently building on my school's servers.
>>
>> Thanks,
>> Andrew
>>
>> On Wed, Apr 12, 2017 at 10:47 AM, Cory Quammen <cory.quammen at kitware.com>
>> wrote:
>>>
>>> Andrew,
>>>
>>> Are you building on a networked file system of some sort? I've run
>>> into issues long ago building software before when the file system and
>>> computer have different ideas of what time it is.
>>>
>>> - Cory
>>>
>>> On Wed, Apr 12, 2017 at 1:29 PM, Andrew Lam <werdna.mal222 at gmail.com>
>>> wrote:
>>> > Hi Andy,
>>> >
>>> > It's still not working. I made a fresh build directory and ran through
>>> > the
>>> > motions again. It still has the same issue. I've attached my
>>> > CMakeCache.txt
>>> > file from my build directory. Please let me know if you see anything or
>>> > if
>>> > there is any other information that you might think would help.
>>> >
>>> > Thanks,
>>> > Andrew
>>> >
>>> > On Wed, Apr 12, 2017 at 8:43 AM, Andy Bauer <andy.bauer at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hi Andrew,
>>> >>
>>> >> This should compile for you now. If it doesn't, please let us know and
>>> >> we
>>> >> can see how to get it working for you. If you do have problems I
>>> >> recommend
>>> >> attaching your CMakeCache.txt file from your build directory so it's
>>> >> easier
>>> >> for others to inspect what you did.
>>> >>
>>> >> Best,
>>> >> Andy
>>> >>
>>> >> On Wed, Apr 12, 2017 at 11:12 AM, Andrew Lam <werdna.mal222 at gmail.com>
>>> >> wrote:
>>> >>>
>>> >>> Ok Andy I can see it now thanks,
>>> >>>
>>> >>> my variables are set to
>>> >>>
>>> >>> Module_vtkParallelMPI4Py *OFF
>>> >>> PYTHON_EXECUTABLE */bin/python2
>>> >>> PYTHON_EXTRA_LIBS *
>>> >>> PYTHON_INCLUDE_DIR */usr/include/python2.7
>>> >>> PYTHON_LIBRARY *//lib64/libpython2.7.so
>>> >>> PYTHON_UTIL_LIBRARY */usr/lib64/libutil.so
>>> >>> VTK_ENABLE_VTKPYTHON *ON
>>> >>>
>>> >>> after I set VTK_WRAP_PYTHON CMake variable to ON
>>> >>>
>>> >>> it seems ok to me, but let me know if they're wrong.
>>> >>>
>>> >>> Thanks,
>>> >>> Andrew
>>> >>>
>>> >>> On Tue, Apr 11, 2017 at 3:30 PM, Andrew Lam <werdna.mal222 at gmail.com>
>>> >>> wrote:
>>> >>>>
>>> >>>> Hi, my name is Andrew. I'm currently in a class that requires us to
>>> >>>> install VTK.
>>> >>>>
>>> >>>> I have an issue running make in my VTK-build directory. I get a
>>> >>>> bunch of
>>> >>>> clock skew issues that pop up that won't go away after calling
>>> >>>>
>>> >>>> $ touch *
>>> >>>>
>>> >>>> then it will print out
>>> >>>>
>>> >>>> make[2]: *** [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
>>> >>>> Error 1
>>> >>>> make[1]: ***
>>> >>>> [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
>>> >>>> Error 2
>>> >>>>
>>> >>>> it will then run to about 32% and then end printing
>>> >>>>
>>> >>>> make: *** [all] Error 2
>>> >>>>
>>> >>>> I'm using python 2.7, VTK 7.1.1, cmake 3.7.2
>>> >>>> I'm also going to include the output of the make call. Please let me
>>> >>>> know if you have any suggestions or if you need any more information
>>> >>>> to
>>> >>>> understand the issue.
>>> >>>>
>>> >>>> [ 0%] Built target kwiml_test
>>> >>>> [ 0%] Built target vtksys
>>> >>>> [ 1%] Built target vtkWrappingTools
>>> >>>> [ 1%] Built target vtkalglib
>>> >>>> [ 1%] Built target vtkexpat
>>> >>>> [ 2%] Built target vtkzlib
>>> >>>> [ 2%] Built target vtkDICOMParser
>>> >>>> [ 2%] Built target vtkEncodeString
>>> >>>> [ 2%] Built target vtkjpeg
>>> >>>> [ 2%] Built target vtkHashSource
>>> >>>> [ 2%] Built target vtkglew
>>> >>>> [ 2%] Built target H5make_libsettings
>>> >>>> [ 2%] Built target H5detect
>>> >>>> [ 2%] Built target vtkWrapTcl
>>> >>>> [ 2%] Built target vtkParseJava
>>> >>>> [ 2%] Built target vtkWrapPython
>>> >>>> [ 2%] Built target vtkWrapPythonInit
>>> >>>> [ 2%] Built target vtkWrapTclInit
>>> >>>> [ 2%] Built target vtkWrapJava
>>> >>>> [ 2%] Built target vtkjsoncpp
>>> >>>> [ 2%] Built target verdict
>>> >>>> [ 2%] Built target vtksqlite
>>> >>>> [ 2%] Built target vtkoggtheora
>>> >>>> [ 2%] Built target vtkWrapHierarchy
>>> >>>> [ 4%] Built target vtkproj4
>>> >>>> [ 4%] Built target vtkfreetype
>>> >>>> [ 5%] Built target vtklibxml2
>>> >>>> [ 5%] Built target vtkpng
>>> >>>> [ 5%] Built target vtkmetaio
>>> >>>> [ 5%] Built target vtkgl2ps
>>> >>>> [ 5%] Built target vtktiff
>>> >>>> [ 20%] Built target vtkCommonCore
>>> >>>> [ 26%] Built target VTKData
>>> >>>> [ 28%] Built target vtkCommonSystem
>>> >>>> [ 29%] Built target vtkCommonMath
>>> >>>> [ 29%] Built target vtkhdf5
>>> >>>> [ 29%] Built target vtkWrappingPythonCore
>>> >>>> [ 29%] Built target vtkLocalExample
>>> >>>> [ 29%] Built target vtkCommonMisc
>>> >>>> [ 29%] Built target vtkCommonTransforms
>>> >>>> [ 29%] Built target vtkCommonSystemCxxTests
>>> >>>> [ 29%] Python Wrapping - generating vtkAbstractArrayPython.cxx
>>> >>>> [ 29%] Built target vtkhdf5_hl
>>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
>>> >>>> --help print this help message
>>> >>>> --version print the VTK version
>>> >>>> -o <file> the output file
>>> >>>> -I <dir> add an include directory
>>> >>>> -D <macro[=def]> define a preprocessor macro
>>> >>>> -U <macro> undefine a preprocessor macro
>>> >>>> @<file> read arguments from a file
>>> >>>> --hints <file> the hints file to use
>>> >>>> --types <file> the type hierarchy file to use
>>> >>>> --concrete force concrete class (ignored, deprecated)
>>> >>>> --abstract force abstract class (ignored, deprecated)
>>> >>>> --vtkobject vtkObjectBase-derived class (ignored,
>>> >>>> deprecated)
>>> >>>> --special non-vtkObjectBase class (ignored, deprecated)
>>> >>>> make[2]: *** [Wrapping/Python/vtkAbstractArrayPython.cxx] Error 1
>>> >>>> make[2]: *** Waiting for unfinished jobs....
>>> >>>> [ 29%] Built target vtkpython
>>> >>>> [ 29%] Python Wrapping - generating
>>> >>>> vtkAngularPeriodicDataArrayPython.cxx
>>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
>>> >>>> --help print this help message
>>> >>>> --version print the VTK version
>>> >>>> -o <file> the output file
>>> >>>> -I <dir> add an include directory
>>> >>>> -D <macro[=def]> define a preprocessor macro
>>> >>>> -U <macro> undefine a preprocessor macro
>>> >>>> @<file> read arguments from a file
>>> >>>> --hints <file> the hints file to use
>>> >>>> --types <file> the type hierarchy file to use
>>> >>>> --concrete force concrete class (ignored, deprecated)
>>> >>>> --abstract force abstract class (ignored, deprecated)
>>> >>>> --vtkobject vtkObjectBase-derived class (ignored,
>>> >>>> deprecated)
>>> >>>> --special non-vtkObjectBase class (ignored, deprecated)
>>> >>>> make[2]: *** [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
>>> >>>> Error 1
>>> >>>> make[1]: ***
>>> >>>> [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
>>> >>>> Error 2
>>> >>>> make[1]: *** Waiting for unfinished jobs....
>>> >>>> Scanning dependencies of target vtkCommonMathCxxTests
>>> >>>> make[2]: Warning: File
>>> >>>>
>>> >>>> `Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/depend.make'
>>> >>>> has modification time 0.041 s in the future
>>> >>>> [ 29%] Building CXX object
>>> >>>>
>>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/vtkCommonMathCxxTests.cxx.o
>>> >>>> [ 29%] Building CXX object
>>> >>>>
>>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestAmoebaMinimizer.cxx.o
>>> >>>> [ 30%] Built target vtkCommonCoreCxxTests
>>> >>>> [ 30%] Building CXX object
>>> >>>>
>>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestMatrix3x3.cxx.o
>>> >>>> [ 30%] Building CXX object
>>> >>>>
>>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestPolynomialSolversUnivariate.cxx.o
>>> >>>> [ 30%] Building CXX object
>>> >>>>
>>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestQuaternion.cxx.o
>>> >>>> [ 30%] Linking CXX executable ../../../../bin/vtkCommonMathCxxTests
>>> >>>> [ 32%] Built target vtkCommonDataModel
>>> >>>> make[2]: warning: Clock skew detected. Your build may be
>>> >>>> incomplete.
>>> >>>> [ 32%] Built target vtkCommonMathCxxTests
>>> >>>> make: *** [all] Error 2
>>> >>>>
>>> >>>
>>> >>>
>>> >>> _______________________________________________
>>> >>> Powered by www.kitware.com
>>> >>>
>>> >>> Visit other Kitware open-source projects at
>>> >>> http://www.kitware.com/opensource/opensource.html
>>> >>>
>>> >>> Please keep messages on-topic and check the VTK FAQ at:
>>> >>> http://www.vtk.org/Wiki/VTK_FAQ
>>> >>>
>>> >>> Search the list archives at: http://markmail.org/search/?q=vtkusers
>>> >>>
>>> >>> Follow this link to subscribe/unsubscribe:
>>> >>> http://public.kitware.com/mailman/listinfo/vtkusers
>>> >>>
>>> >>
>>> >
>>> >
>>> > _______________________________________________
>>> > Powered by www.kitware.com
>>> >
>>> > Visit other Kitware open-source projects at
>>> > http://www.kitware.com/opensource/opensource.html
>>> >
>>> > Please keep messages on-topic and check the VTK FAQ at:
>>> > http://www.vtk.org/Wiki/VTK_FAQ
>>> >
>>> > Search the list archives at: http://markmail.org/search/?q=vtkusers
>>> >
>>> > Follow this link to subscribe/unsubscribe:
>>> > http://public.kitware.com/mailman/listinfo/vtkusers
>>> >
>>>
>>>
>>>
>>> --
>>> Cory Quammen
>>> Staff R&D Engineer
>>> Kitware, Inc.
>>
>>
>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the VTK FAQ at:
> http://www.vtk.org/Wiki/VTK_FAQ
>
> Search the list archives at: http://markmail.org/search/?q=vtkusers
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/vtkusers
>
--
Cory Quammen
Staff R&D Engineer
Kitware, Inc.
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