[vtkusers] Error compiling vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx (VTK 6.1.0)
Jeff Baumes
jeff.baumes at kitware.com
Tue Jun 17 09:42:20 EDT 2014
I did a Windows build where I was able to replicate the first issue
(subscript out of range), but not the second issue. Here are some details
on my setup:
Visual Studio 2010 64-bit
Boost 1.55.0
VTK master
Windows 7
When I turn on testing and run the following:
C:\code\VTK-build>"C:\Program Files (x86)\CMake 2.8\bin\ctest.exe" -R
Divided -V -C Debug
the bundling completes successfully and matches the test image. Can you
reproduce your error running the test?
Jeff
On Mon, Jun 16, 2014 at 10:53 AM, Martijn Steenwijk <
martijnsteenwijk at gmail.com> wrote:
> I tried the previous conversion-example in my own code (after updating the
> edgebundling filter); that's why it gave the same values as the output of
> the edgebundling filter. Stupid, sorry.
>
>
> BUT; (completely separately from the edgebundlingfilter) conversion from
> vtkData to
> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>
> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
> gives zeros for all elements (the IND stuff might result from division
> somewhere?)
>
> whereas
> vtkVector3d *nodes = reinterpret_cast<vtkVector3d*>(
>
> vtkDoubleArray::SafeDownCast(graph->GetPoints()->GetData())->GetPointer(0));
> gives Access violation reading location 0x000000e0.
>
> So I think this should be done differently I think...
>
> Thanks again for your help.
>
> Best,
> Martijn
>
>
> On Mon, Jun 16, 2014 at 4:41 PM, Jeff Baumes <jeff.baumes at kitware.com>
> wrote:
>
>> On second thought this will not work when converting to vtkVector3f, you
>> would need to use vtkVector3d everywhere ...
>>
>> Jeff
>>
>>
>> On Mon, Jun 16, 2014 at 10:39 AM, Jeff Baumes <jeff.baumes at kitware.com>
>> wrote:
>>
>>> See if it works if you change vtkFloatArray to vtkDoubleArray. May be
>>> another issue of not testing all cases/systems.
>>>
>>> Jeff
>>>
>>>
>>> On Mon, Jun 16, 2014 at 10:37 AM, Martijn Steenwijk <
>>> martijnsteenwijk at gmail.com> wrote:
>>>
>>>> Hi Jeff,
>>>>
>>>> It does run, but does not give proper output. I tried to figure out
>>>> what's going wrong. The filter returns 8 vertices and 11 edges, however the
>>>> points have values
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>> -1.#IND -1.#IND -1.#IND
>>>>
>>>> I've the feeling th at it already goes wrong at the import of the
>>>> points; i.e.
>>>> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>>>>
>>>> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
>>>>
>>>> std::cout << nodes[0][0] << std::cendl;
>>>>
>>>> gives already -1.#IND
>>>>
>>>> Best,
>>>> Martijn
>>>>
>>>>
>>>>
>>>> On Mon, Jun 16, 2014 at 1:32 PM, Jeff Baumes <jeff.baumes at kitware.com>
>>>> wrote:
>>>>
>>>>> Looks to me like you caught a bug. This does indeed sometimes go off
>>>>> the end of the array, but the potential junk data it gets is always
>>>>> multiplied with an alpha value of 0, so the algorithm still functions
>>>>> properly. It seems this code may not currently be tested in an environment
>>>>> with runtime bounds-checking exceptions. Modifiying the loop with an
>>>>> additional check may resolve the problem (though on my Mac I am not getting
>>>>> the runtime error even though it was going past the end of the array):
>>>>>
>>>>> for (vtkIdType e = 0; e < numEdges; ++e)
>>>>> {
>>>>> for (int m = 0; m < newMeshCount; ++m)
>>>>> {
>>>>> float indexFloat = (this->MeshCount - 1.0f)*m/(newMeshCount -
>>>>> 1.0f);
>>>>> int index = static_cast<int>(indexFloat);
>>>>> float alpha = indexFloat - index;
>>>>> vtkVector3f before = this->EdgeMesh[e][index];
>>>>> if (alpha > 0)
>>>>> {
>>>>> vtkVector3f after = this->EdgeMesh[e][index+1];
>>>>> newEdgeMesh[e][m] = before + alpha*(after - before);
>>>>> }
>>>>> else
>>>>> {
>>>>> newEdgeMesh[e][m] = before;
>>>>> }
>>>>> }
>>>>> }
>>>>>
>>>>> Let me know if this works for you and we can get a fix into VTK.
>>>>>
>>>>> Jeff
>>>>>
>>>>>
>>>>> On Mon, Jun 16, 2014 at 6:00 AM, Martijn Steenwijk <
>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>
>>>>>> To add on that. It seems that LayoutEdgePoints() is in its first
>>>>>> iteration (so i is 0 at line 530) - this is right after
>>>>>> initializeedgemesh().
>>>>>>
>>>>>> Best,
>>>>>> Martijn
>>>>>>
>>>>>>
>>>>>> On Mon, Jun 16, 2014 at 11:52 AM, Martijn Steenwijk <
>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>
>>>>>>>
>>>>>>> Hi Jeff,
>>>>>>>
>>>>>>> You're right. At first glance I thought that too, but then got a
>>>>>>> linker error message which was (after second reading) not related to VTK.
>>>>>>> Sorry, I should have looked better.
>>>>>>>
>>>>>>> Now it does compile, but I'm getting another error on calling
>>>>>>> Update() of vtkBoostDividedEdgeBundling: I use the same graph as in the
>>>>>>> TestBoostDividedEdgeBundling:
>>>>>>>
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(20, 40, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(20, 80, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(20, 120, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(20, 160, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(380, 40, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(380, 80, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(380, 120, 0);
>>>>>>> graph->AddVertex();
>>>>>>> points->InsertNextPoint(380, 160, 0);
>>>>>>> graph->SetPoints(points.GetPointer());
>>>>>>>
>>>>>>> graph->AddEdge(0, 4);
>>>>>>> graph->AddEdge(0, 5);
>>>>>>> graph->AddEdge(1, 4);
>>>>>>> graph->AddEdge(1, 5);
>>>>>>> graph->AddEdge(2, 6);
>>>>>>> graph->AddEdge(2, 7);
>>>>>>> graph->AddEdge(3, 6);
>>>>>>> graph->AddEdge(3, 7);
>>>>>>>
>>>>>>> graph->AddEdge(4, 0);
>>>>>>> graph->AddEdge(5, 0);
>>>>>>> graph->AddEdge(6, 0);
>>>>>>>
>>>>>>> Then a "vector subscript out of range" is thrown at line 368 of
>>>>>>> vtkBoostDividedEdgeBundling.cxx (see image):
>>>>>>> [image: Inline image 2]
>>>>>>>
>>>>>>> it tries to get this->EdgeMesh[e][index+1] where e=0 and index=1 (so
>>>>>>> element [0][2] is requested), but this->EdgeMesh[e] has length 2.
>>>>>>>
>>>>>>> Any thoughts how this can be solved?
>>>>>>>
>>>>>>> Best,
>>>>>>> Martijn
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jun 16, 2014 at 3:49 AM, Jeff Baumes <
>>>>>>> jeff.baumes at kitware.com> wrote:
>>>>>>>
>>>>>>>> You should not need to turn on the vtkInfovisParallel module to
>>>>>>>> compile vtkBoostDividedEdgeBundling. You should be able to just turn
>>>>>>>> vtkInfovisBoostGraphAlgorithms on.
>>>>>>>>
>>>>>>>> Jeff
>>>>>>>>
>>>>>>>>
>>>>>>>> On Sat, Jun 14, 2014 at 4:38 AM, Martijn Steenwijk <
>>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hi David,
>>>>>>>>>
>>>>>>>>> Thanks for your response. I'm building this module because I would
>>>>>>>>> like to use vtkBoostDevidedEdgeBundling which seems to rely on this module
>>>>>>>>> (i.e. If I do not compile the module I get a linker error). Or am I doing
>>>>>>>>> something wrong?
>>>>>>>>>
>>>>>>>>> Is there any quick fix for this?
>>>>>>>>>
>>>>>>>>> Thanks for your response,
>>>>>>>>> Martijn
>>>>>>>>>
>>>>>>>>> Verstuurd vanaf mijn iPhone
>>>>>>>>>
>>>>>>>>> Op 14 jun. 2014 om 00:55 heeft David E DeMarle <
>>>>>>>>> dave.demarle at kitware.com> het volgende geschreven:
>>>>>>>>>
>>>>>>>>> I had that compiling with boost 1.48 on one of the dashboard
>>>>>>>>> machines a while back.
>>>>>>>>>
>>>>>>>>> The module itself hasn't been maintained in a long while and thus
>>>>>>>>> I marked it as deprecated in master a few months back. If there is interest
>>>>>>>>> in it from the community and someone brings it up to date with current
>>>>>>>>> boost and supply tests for the module, I can undeprecate it before 6.2.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> David E DeMarle
>>>>>>>>> Kitware, Inc.
>>>>>>>>> R&D Engineer
>>>>>>>>> 21 Corporate Drive
>>>>>>>>> Clifton Park, NY 12065-8662
>>>>>>>>> Phone: 518-881-4909
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Fri, Jun 13, 2014 at 5:51 PM, Martijn Steenwijk <
>>>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Hi all,
>>>>>>>>>>
>>>>>>>>>> I'm trying to compile VTK 6.1.0 on Windows (MSVC 2010) with Boost
>>>>>>>>>> 1.55.0 and openmpi 1.6.2. I'm getting an error while compiling
>>>>>>>>>> vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx. as listed below. It
>>>>>>>>>> seems that Boost misses some properties. Could this be related to the Boost
>>>>>>>>>> version (if so, what could be used best?)
>>>>>>>>>>
>>>>>>>>>> Any help would be appreciated.
>>>>>>>>>>
>>>>>>>>>> Best,
>>>>>>>>>> Martijn
>>>>>>>>>>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>>>> 94>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>>>> 94>
>>>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(365) : see
>>>>>>>>>> reference to function template instantiation 'void
>>>>>>>>>> boost::detail::parallel_bfs_helper<vtkDirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>>>> being compiled
>>>>>>>>>> 94> with
>>>>>>>>>> 94> [
>>>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>>>> 94> DistributedGraph=vtkDirectedGraph *,
>>>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>>>> 94>
>>>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>>>> 94>
>>>>>>>>>> BufferRef=boost::detail::error_property_not_found,
>>>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>>>> 94> ]
>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>>>> 94>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>>>> arguments - 5 provided
>>>>>>>>>> 94>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>>>> 94>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>>>> 94>
>>>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(373) : see
>>>>>>>>>> reference to function template instantiation 'void
>>>>>>>>>> boost::detail::parallel_bfs_helper<vtkUndirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>>>> being compiled
>>>>>>>>>> 94> with
>>>>>>>>>> 94> [
>>>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>>>> 94> DistributedGraph=vtkUndirectedGraph *,
>>>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>>>> 94>
>>>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>>>> 94>
>>>>>>>>>> BufferRef=boost::detail::error_property_not_found,
>>>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>>>> 94> ]
>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>>>> 94>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>>>> arguments - 5 provided
>>>>>>>>>> 94>
>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>> 108>------ Build started: Project: ALL_BUILD, Configuration:
>>>>>>>>>> Debug Win32 ------
>>>>>>>>>> 108> Build all projects
>>>>>>>>>> ========== Build: 105 succeeded, 3 failed, 24 up-to-date, 0
>>>>>>>>>> skipped ==========
>>>>>>>>>>
>>>>>>>>>>
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>>>>>>>>>
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>>>>>>>>> Powered by www.kitware.com
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>>>>>>>>> Please keep messages on-topic and check the VTK FAQ at:
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