[vtkusers] Error compiling vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx (VTK 6.1.0)
Martijn Steenwijk
martijnsteenwijk at gmail.com
Mon Jun 16 10:53:05 EDT 2014
I tried the previous conversion-example in my own code (after updating the
edgebundling filter); that's why it gave the same values as the output of
the edgebundling filter. Stupid, sorry.
BUT; (completely separately from the edgebundlingfilter) conversion from
vtkData to
vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
gives zeros for all elements (the IND stuff might result from division
somewhere?)
whereas
vtkVector3d *nodes = reinterpret_cast<vtkVector3d*>(
vtkDoubleArray::SafeDownCast(graph->GetPoints()->GetData())->GetPointer(0));
gives Access violation reading location 0x000000e0.
So I think this should be done differently I think...
Thanks again for your help.
Best,
Martijn
On Mon, Jun 16, 2014 at 4:41 PM, Jeff Baumes <jeff.baumes at kitware.com>
wrote:
> On second thought this will not work when converting to vtkVector3f, you
> would need to use vtkVector3d everywhere ...
>
> Jeff
>
>
> On Mon, Jun 16, 2014 at 10:39 AM, Jeff Baumes <jeff.baumes at kitware.com>
> wrote:
>
>> See if it works if you change vtkFloatArray to vtkDoubleArray. May be
>> another issue of not testing all cases/systems.
>>
>> Jeff
>>
>>
>> On Mon, Jun 16, 2014 at 10:37 AM, Martijn Steenwijk <
>> martijnsteenwijk at gmail.com> wrote:
>>
>>> Hi Jeff,
>>>
>>> It does run, but does not give proper output. I tried to figure out
>>> what's going wrong. The filter returns 8 vertices and 11 edges, however the
>>> points have values
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>> -1.#IND -1.#IND -1.#IND
>>>
>>> I've the feeling th at it already goes wrong at the import of the
>>> points; i.e.
>>> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>>>
>>> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
>>>
>>> std::cout << nodes[0][0] << std::cendl;
>>>
>>> gives already -1.#IND
>>>
>>> Best,
>>> Martijn
>>>
>>>
>>>
>>> On Mon, Jun 16, 2014 at 1:32 PM, Jeff Baumes <jeff.baumes at kitware.com>
>>> wrote:
>>>
>>>> Looks to me like you caught a bug. This does indeed sometimes go off
>>>> the end of the array, but the potential junk data it gets is always
>>>> multiplied with an alpha value of 0, so the algorithm still functions
>>>> properly. It seems this code may not currently be tested in an environment
>>>> with runtime bounds-checking exceptions. Modifiying the loop with an
>>>> additional check may resolve the problem (though on my Mac I am not getting
>>>> the runtime error even though it was going past the end of the array):
>>>>
>>>> for (vtkIdType e = 0; e < numEdges; ++e)
>>>> {
>>>> for (int m = 0; m < newMeshCount; ++m)
>>>> {
>>>> float indexFloat = (this->MeshCount - 1.0f)*m/(newMeshCount -
>>>> 1.0f);
>>>> int index = static_cast<int>(indexFloat);
>>>> float alpha = indexFloat - index;
>>>> vtkVector3f before = this->EdgeMesh[e][index];
>>>> if (alpha > 0)
>>>> {
>>>> vtkVector3f after = this->EdgeMesh[e][index+1];
>>>> newEdgeMesh[e][m] = before + alpha*(after - before);
>>>> }
>>>> else
>>>> {
>>>> newEdgeMesh[e][m] = before;
>>>> }
>>>> }
>>>> }
>>>>
>>>> Let me know if this works for you and we can get a fix into VTK.
>>>>
>>>> Jeff
>>>>
>>>>
>>>> On Mon, Jun 16, 2014 at 6:00 AM, Martijn Steenwijk <
>>>> martijnsteenwijk at gmail.com> wrote:
>>>>
>>>>> To add on that. It seems that LayoutEdgePoints() is in its first
>>>>> iteration (so i is 0 at line 530) - this is right after
>>>>> initializeedgemesh().
>>>>>
>>>>> Best,
>>>>> Martijn
>>>>>
>>>>>
>>>>> On Mon, Jun 16, 2014 at 11:52 AM, Martijn Steenwijk <
>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>
>>>>>>
>>>>>> Hi Jeff,
>>>>>>
>>>>>> You're right. At first glance I thought that too, but then got a
>>>>>> linker error message which was (after second reading) not related to VTK.
>>>>>> Sorry, I should have looked better.
>>>>>>
>>>>>> Now it does compile, but I'm getting another error on calling
>>>>>> Update() of vtkBoostDividedEdgeBundling: I use the same graph as in the
>>>>>> TestBoostDividedEdgeBundling:
>>>>>>
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(20, 40, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(20, 80, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(20, 120, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(20, 160, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(380, 40, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(380, 80, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(380, 120, 0);
>>>>>> graph->AddVertex();
>>>>>> points->InsertNextPoint(380, 160, 0);
>>>>>> graph->SetPoints(points.GetPointer());
>>>>>>
>>>>>> graph->AddEdge(0, 4);
>>>>>> graph->AddEdge(0, 5);
>>>>>> graph->AddEdge(1, 4);
>>>>>> graph->AddEdge(1, 5);
>>>>>> graph->AddEdge(2, 6);
>>>>>> graph->AddEdge(2, 7);
>>>>>> graph->AddEdge(3, 6);
>>>>>> graph->AddEdge(3, 7);
>>>>>>
>>>>>> graph->AddEdge(4, 0);
>>>>>> graph->AddEdge(5, 0);
>>>>>> graph->AddEdge(6, 0);
>>>>>>
>>>>>> Then a "vector subscript out of range" is thrown at line 368 of
>>>>>> vtkBoostDividedEdgeBundling.cxx (see image):
>>>>>> [image: Inline image 2]
>>>>>>
>>>>>> it tries to get this->EdgeMesh[e][index+1] where e=0 and index=1 (so
>>>>>> element [0][2] is requested), but this->EdgeMesh[e] has length 2.
>>>>>>
>>>>>> Any thoughts how this can be solved?
>>>>>>
>>>>>> Best,
>>>>>> Martijn
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Mon, Jun 16, 2014 at 3:49 AM, Jeff Baumes <jeff.baumes at kitware.com
>>>>>> > wrote:
>>>>>>
>>>>>>> You should not need to turn on the vtkInfovisParallel module to
>>>>>>> compile vtkBoostDividedEdgeBundling. You should be able to just turn
>>>>>>> vtkInfovisBoostGraphAlgorithms on.
>>>>>>>
>>>>>>> Jeff
>>>>>>>
>>>>>>>
>>>>>>> On Sat, Jun 14, 2014 at 4:38 AM, Martijn Steenwijk <
>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hi David,
>>>>>>>>
>>>>>>>> Thanks for your response. I'm building this module because I would
>>>>>>>> like to use vtkBoostDevidedEdgeBundling which seems to rely on this module
>>>>>>>> (i.e. If I do not compile the module I get a linker error). Or am I doing
>>>>>>>> something wrong?
>>>>>>>>
>>>>>>>> Is there any quick fix for this?
>>>>>>>>
>>>>>>>> Thanks for your response,
>>>>>>>> Martijn
>>>>>>>>
>>>>>>>> Verstuurd vanaf mijn iPhone
>>>>>>>>
>>>>>>>> Op 14 jun. 2014 om 00:55 heeft David E DeMarle <
>>>>>>>> dave.demarle at kitware.com> het volgende geschreven:
>>>>>>>>
>>>>>>>> I had that compiling with boost 1.48 on one of the dashboard
>>>>>>>> machines a while back.
>>>>>>>>
>>>>>>>> The module itself hasn't been maintained in a long while and thus I
>>>>>>>> marked it as deprecated in master a few months back. If there is interest
>>>>>>>> in it from the community and someone brings it up to date with current
>>>>>>>> boost and supply tests for the module, I can undeprecate it before 6.2.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> David E DeMarle
>>>>>>>> Kitware, Inc.
>>>>>>>> R&D Engineer
>>>>>>>> 21 Corporate Drive
>>>>>>>> Clifton Park, NY 12065-8662
>>>>>>>> Phone: 518-881-4909
>>>>>>>>
>>>>>>>>
>>>>>>>> On Fri, Jun 13, 2014 at 5:51 PM, Martijn Steenwijk <
>>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hi all,
>>>>>>>>>
>>>>>>>>> I'm trying to compile VTK 6.1.0 on Windows (MSVC 2010) with Boost
>>>>>>>>> 1.55.0 and openmpi 1.6.2. I'm getting an error while compiling
>>>>>>>>> vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx. as listed below. It
>>>>>>>>> seems that Boost misses some properties. Could this be related to the Boost
>>>>>>>>> version (if so, what could be used best?)
>>>>>>>>>
>>>>>>>>> Any help would be appreciated.
>>>>>>>>>
>>>>>>>>> Best,
>>>>>>>>> Martijn
>>>>>>>>>
>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>>> 94>
>>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>>> 94>
>>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(365) : see
>>>>>>>>> reference to function template instantiation 'void
>>>>>>>>> boost::detail::parallel_bfs_helper<vtkDirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>>> being compiled
>>>>>>>>> 94> with
>>>>>>>>> 94> [
>>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>>> 94> DistributedGraph=vtkDirectedGraph *,
>>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>>> 94>
>>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>>> 94> ]
>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>>> 94>
>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>>> arguments - 5 provided
>>>>>>>>> 94>
>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>>> 94>
>>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>>> 94>
>>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(373) : see
>>>>>>>>> reference to function template instantiation 'void
>>>>>>>>> boost::detail::parallel_bfs_helper<vtkUndirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>>> being compiled
>>>>>>>>> 94> with
>>>>>>>>> 94> [
>>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>>> 94> DistributedGraph=vtkUndirectedGraph *,
>>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>>> 94>
>>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>>> 94> ]
>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>>> 94>
>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>>> arguments - 5 provided
>>>>>>>>> 94>
>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>> 108>------ Build started: Project: ALL_BUILD, Configuration: Debug
>>>>>>>>> Win32 ------
>>>>>>>>> 108> Build all projects
>>>>>>>>> ========== Build: 105 succeeded, 3 failed, 24 up-to-date, 0
>>>>>>>>> skipped ==========
>>>>>>>>>
>>>>>>>>>
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>>>>>>>> Powered by www.kitware.com
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>>>>>>>> Visit other Kitware open-source projects at
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>>>>>
>>>>
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>>
>
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