[vtkusers] Error compiling vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx (VTK 6.1.0)
Martijn Steenwijk
martijnsteenwijk at gmail.com
Sun Jun 22 18:45:41 EDT 2014
Hi Jeff,
Sorry for the late response. You can drop the error about the nan's. It was
another error in my code. So fixing the first issue would be enough.
Best,
Martijn
On Tue, Jun 17, 2014 at 3:42 PM, Jeff Baumes <jeff.baumes at kitware.com>
wrote:
> I did a Windows build where I was able to replicate the first issue
> (subscript out of range), but not the second issue. Here are some details
> on my setup:
>
> Visual Studio 2010 64-bit
> Boost 1.55.0
> VTK master
> Windows 7
>
> When I turn on testing and run the following:
>
> C:\code\VTK-build>"C:\Program Files (x86)\CMake 2.8\bin\ctest.exe" -R
> Divided -V -C Debug
>
> the bundling completes successfully and matches the test image. Can you
> reproduce your error running the test?
>
> Jeff
>
>
> On Mon, Jun 16, 2014 at 10:53 AM, Martijn Steenwijk <
> martijnsteenwijk at gmail.com> wrote:
>
>> I tried the previous conversion-example in my own code (after updating
>> the edgebundling filter); that's why it gave the same values as the output
>> of the edgebundling filter. Stupid, sorry.
>>
>>
>> BUT; (completely separately from the edgebundlingfilter) conversion from
>> vtkData to
>> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>>
>> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
>> gives zeros for all elements (the IND stuff might result from division
>> somewhere?)
>>
>> whereas
>> vtkVector3d *nodes = reinterpret_cast<vtkVector3d*>(
>>
>> vtkDoubleArray::SafeDownCast(graph->GetPoints()->GetData())->GetPointer(0));
>> gives Access violation reading location 0x000000e0.
>>
>> So I think this should be done differently I think...
>>
>> Thanks again for your help.
>>
>> Best,
>> Martijn
>>
>>
>> On Mon, Jun 16, 2014 at 4:41 PM, Jeff Baumes <jeff.baumes at kitware.com>
>> wrote:
>>
>>> On second thought this will not work when converting to vtkVector3f, you
>>> would need to use vtkVector3d everywhere ...
>>>
>>> Jeff
>>>
>>>
>>> On Mon, Jun 16, 2014 at 10:39 AM, Jeff Baumes <jeff.baumes at kitware.com>
>>> wrote:
>>>
>>>> See if it works if you change vtkFloatArray to vtkDoubleArray. May be
>>>> another issue of not testing all cases/systems.
>>>>
>>>> Jeff
>>>>
>>>>
>>>> On Mon, Jun 16, 2014 at 10:37 AM, Martijn Steenwijk <
>>>> martijnsteenwijk at gmail.com> wrote:
>>>>
>>>>> Hi Jeff,
>>>>>
>>>>> It does run, but does not give proper output. I tried to figure out
>>>>> what's going wrong. The filter returns 8 vertices and 11 edges, however the
>>>>> points have values
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>> -1.#IND -1.#IND -1.#IND
>>>>>
>>>>> I've the feeling th at it already goes wrong at the import of the
>>>>> points; i.e.
>>>>> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>>>>>
>>>>> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
>>>>>
>>>>> std::cout << nodes[0][0] << std::cendl;
>>>>>
>>>>> gives already -1.#IND
>>>>>
>>>>> Best,
>>>>> Martijn
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Jun 16, 2014 at 1:32 PM, Jeff Baumes <jeff.baumes at kitware.com>
>>>>> wrote:
>>>>>
>>>>>> Looks to me like you caught a bug. This does indeed sometimes go off
>>>>>> the end of the array, but the potential junk data it gets is always
>>>>>> multiplied with an alpha value of 0, so the algorithm still functions
>>>>>> properly. It seems this code may not currently be tested in an environment
>>>>>> with runtime bounds-checking exceptions. Modifiying the loop with an
>>>>>> additional check may resolve the problem (though on my Mac I am not getting
>>>>>> the runtime error even though it was going past the end of the array):
>>>>>>
>>>>>> for (vtkIdType e = 0; e < numEdges; ++e)
>>>>>> {
>>>>>> for (int m = 0; m < newMeshCount; ++m)
>>>>>> {
>>>>>> float indexFloat = (this->MeshCount - 1.0f)*m/(newMeshCount -
>>>>>> 1.0f);
>>>>>> int index = static_cast<int>(indexFloat);
>>>>>> float alpha = indexFloat - index;
>>>>>> vtkVector3f before = this->EdgeMesh[e][index];
>>>>>> if (alpha > 0)
>>>>>> {
>>>>>> vtkVector3f after = this->EdgeMesh[e][index+1];
>>>>>> newEdgeMesh[e][m] = before + alpha*(after - before);
>>>>>> }
>>>>>> else
>>>>>> {
>>>>>> newEdgeMesh[e][m] = before;
>>>>>> }
>>>>>> }
>>>>>> }
>>>>>>
>>>>>> Let me know if this works for you and we can get a fix into VTK.
>>>>>>
>>>>>> Jeff
>>>>>>
>>>>>>
>>>>>> On Mon, Jun 16, 2014 at 6:00 AM, Martijn Steenwijk <
>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>
>>>>>>> To add on that. It seems that LayoutEdgePoints() is in its first
>>>>>>> iteration (so i is 0 at line 530) - this is right after
>>>>>>> initializeedgemesh().
>>>>>>>
>>>>>>> Best,
>>>>>>> Martijn
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jun 16, 2014 at 11:52 AM, Martijn Steenwijk <
>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>
>>>>>>>>
>>>>>>>> Hi Jeff,
>>>>>>>>
>>>>>>>> You're right. At first glance I thought that too, but then got a
>>>>>>>> linker error message which was (after second reading) not related to VTK.
>>>>>>>> Sorry, I should have looked better.
>>>>>>>>
>>>>>>>> Now it does compile, but I'm getting another error on calling
>>>>>>>> Update() of vtkBoostDividedEdgeBundling: I use the same graph as in the
>>>>>>>> TestBoostDividedEdgeBundling:
>>>>>>>>
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(20, 40, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(20, 80, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(20, 120, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(20, 160, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(380, 40, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(380, 80, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(380, 120, 0);
>>>>>>>> graph->AddVertex();
>>>>>>>> points->InsertNextPoint(380, 160, 0);
>>>>>>>> graph->SetPoints(points.GetPointer());
>>>>>>>>
>>>>>>>> graph->AddEdge(0, 4);
>>>>>>>> graph->AddEdge(0, 5);
>>>>>>>> graph->AddEdge(1, 4);
>>>>>>>> graph->AddEdge(1, 5);
>>>>>>>> graph->AddEdge(2, 6);
>>>>>>>> graph->AddEdge(2, 7);
>>>>>>>> graph->AddEdge(3, 6);
>>>>>>>> graph->AddEdge(3, 7);
>>>>>>>>
>>>>>>>> graph->AddEdge(4, 0);
>>>>>>>> graph->AddEdge(5, 0);
>>>>>>>> graph->AddEdge(6, 0);
>>>>>>>>
>>>>>>>> Then a "vector subscript out of range" is thrown at line 368 of
>>>>>>>> vtkBoostDividedEdgeBundling.cxx (see image):
>>>>>>>> [image: Inline image 2]
>>>>>>>>
>>>>>>>> it tries to get this->EdgeMesh[e][index+1] where e=0 and index=1
>>>>>>>> (so element [0][2] is requested), but this->EdgeMesh[e] has length 2.
>>>>>>>>
>>>>>>>> Any thoughts how this can be solved?
>>>>>>>>
>>>>>>>> Best,
>>>>>>>> Martijn
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mon, Jun 16, 2014 at 3:49 AM, Jeff Baumes <
>>>>>>>> jeff.baumes at kitware.com> wrote:
>>>>>>>>
>>>>>>>>> You should not need to turn on the vtkInfovisParallel module to
>>>>>>>>> compile vtkBoostDividedEdgeBundling. You should be able to just turn
>>>>>>>>> vtkInfovisBoostGraphAlgorithms on.
>>>>>>>>>
>>>>>>>>> Jeff
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Sat, Jun 14, 2014 at 4:38 AM, Martijn Steenwijk <
>>>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Hi David,
>>>>>>>>>>
>>>>>>>>>> Thanks for your response. I'm building this module because I
>>>>>>>>>> would like to use vtkBoostDevidedEdgeBundling which seems to rely on this
>>>>>>>>>> module (i.e. If I do not compile the module I get a linker error). Or am I
>>>>>>>>>> doing something wrong?
>>>>>>>>>>
>>>>>>>>>> Is there any quick fix for this?
>>>>>>>>>>
>>>>>>>>>> Thanks for your response,
>>>>>>>>>> Martijn
>>>>>>>>>>
>>>>>>>>>> Verstuurd vanaf mijn iPhone
>>>>>>>>>>
>>>>>>>>>> Op 14 jun. 2014 om 00:55 heeft David E DeMarle <
>>>>>>>>>> dave.demarle at kitware.com> het volgende geschreven:
>>>>>>>>>>
>>>>>>>>>> I had that compiling with boost 1.48 on one of the dashboard
>>>>>>>>>> machines a while back.
>>>>>>>>>>
>>>>>>>>>> The module itself hasn't been maintained in a long while and thus
>>>>>>>>>> I marked it as deprecated in master a few months back. If there is interest
>>>>>>>>>> in it from the community and someone brings it up to date with current
>>>>>>>>>> boost and supply tests for the module, I can undeprecate it before 6.2.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> David E DeMarle
>>>>>>>>>> Kitware, Inc.
>>>>>>>>>> R&D Engineer
>>>>>>>>>> 21 Corporate Drive
>>>>>>>>>> Clifton Park, NY 12065-8662
>>>>>>>>>> Phone: 518-881-4909
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Fri, Jun 13, 2014 at 5:51 PM, Martijn Steenwijk <
>>>>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi all,
>>>>>>>>>>>
>>>>>>>>>>> I'm trying to compile VTK 6.1.0 on Windows (MSVC 2010) with
>>>>>>>>>>> Boost 1.55.0 and openmpi 1.6.2. I'm getting an error while compiling
>>>>>>>>>>> vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx. as listed below. It
>>>>>>>>>>> seems that Boost misses some properties. Could this be related to the Boost
>>>>>>>>>>> version (if so, what could be used best?)
>>>>>>>>>>>
>>>>>>>>>>> Any help would be appreciated.
>>>>>>>>>>>
>>>>>>>>>>> Best,
>>>>>>>>>>> Martijn
>>>>>>>>>>>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>>>>> 94>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>>>>> 94>
>>>>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(365) : see
>>>>>>>>>>> reference to function template instantiation 'void
>>>>>>>>>>> boost::detail::parallel_bfs_helper<vtkDirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>>>>> being compiled
>>>>>>>>>>> 94> with
>>>>>>>>>>> 94> [
>>>>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>>>>> 94> DistributedGraph=vtkDirectedGraph *,
>>>>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>>>>> 94>
>>>>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>>>>> 94>
>>>>>>>>>>> BufferRef=boost::detail::error_property_not_found,
>>>>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>>>>> 94> ]
>>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>>>>> 94>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>>>>> arguments - 5 provided
>>>>>>>>>>> 94>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>>>>> 94>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>>>>> 94>
>>>>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(373) : see
>>>>>>>>>>> reference to function template instantiation 'void
>>>>>>>>>>> boost::detail::parallel_bfs_helper<vtkUndirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>>>>> being compiled
>>>>>>>>>>> 94> with
>>>>>>>>>>> 94> [
>>>>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>>>>> 94> DistributedGraph=vtkUndirectedGraph *,
>>>>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>>>>> 94>
>>>>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>>>>> 94>
>>>>>>>>>>> BufferRef=boost::detail::error_property_not_found,
>>>>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>>>>> 94> ]
>>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>>>>> 94>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>>>>> arguments - 5 provided
>>>>>>>>>>> 94>
>>>>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>>>>> 108>------ Build started: Project: ALL_BUILD, Configuration:
>>>>>>>>>>> Debug Win32 ------
>>>>>>>>>>> 108> Build all projects
>>>>>>>>>>> ========== Build: 105 succeeded, 3 failed, 24 up-to-date, 0
>>>>>>>>>>> skipped ==========
>>>>>>>>>>>
>>>>>>>>>>>
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>>>>>>>>>> Powered by www.kitware.com
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>>>>>>>>>> Please keep messages on-topic and check the VTK FAQ at:
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>>>>>>>>>
>>>>>>>>
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>>>>>>
>>>>>
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>>
>
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