[vtkusers] Error compiling vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx (VTK 6.1.0)
Jeff Baumes
jeff.baumes at kitware.com
Mon Jun 16 10:41:04 EDT 2014
On second thought this will not work when converting to vtkVector3f, you
would need to use vtkVector3d everywhere ...
Jeff
On Mon, Jun 16, 2014 at 10:39 AM, Jeff Baumes <jeff.baumes at kitware.com>
wrote:
> See if it works if you change vtkFloatArray to vtkDoubleArray. May be
> another issue of not testing all cases/systems.
>
> Jeff
>
>
> On Mon, Jun 16, 2014 at 10:37 AM, Martijn Steenwijk <
> martijnsteenwijk at gmail.com> wrote:
>
>> Hi Jeff,
>>
>> It does run, but does not give proper output. I tried to figure out
>> what's going wrong. The filter returns 8 vertices and 11 edges, however the
>> points have values
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>> -1.#IND -1.#IND -1.#IND
>>
>> I've the feeling th at it already goes wrong at the import of the points;
>> i.e.
>> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>>
>> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
>>
>> std::cout << nodes[0][0] << std::cendl;
>>
>> gives already -1.#IND
>>
>> Best,
>> Martijn
>>
>>
>>
>> On Mon, Jun 16, 2014 at 1:32 PM, Jeff Baumes <jeff.baumes at kitware.com>
>> wrote:
>>
>>> Looks to me like you caught a bug. This does indeed sometimes go off the
>>> end of the array, but the potential junk data it gets is always multiplied
>>> with an alpha value of 0, so the algorithm still functions properly. It
>>> seems this code may not currently be tested in an environment with runtime
>>> bounds-checking exceptions. Modifiying the loop with an additional check
>>> may resolve the problem (though on my Mac I am not getting the runtime
>>> error even though it was going past the end of the array):
>>>
>>> for (vtkIdType e = 0; e < numEdges; ++e)
>>> {
>>> for (int m = 0; m < newMeshCount; ++m)
>>> {
>>> float indexFloat = (this->MeshCount - 1.0f)*m/(newMeshCount -
>>> 1.0f);
>>> int index = static_cast<int>(indexFloat);
>>> float alpha = indexFloat - index;
>>> vtkVector3f before = this->EdgeMesh[e][index];
>>> if (alpha > 0)
>>> {
>>> vtkVector3f after = this->EdgeMesh[e][index+1];
>>> newEdgeMesh[e][m] = before + alpha*(after - before);
>>> }
>>> else
>>> {
>>> newEdgeMesh[e][m] = before;
>>> }
>>> }
>>> }
>>>
>>> Let me know if this works for you and we can get a fix into VTK.
>>>
>>> Jeff
>>>
>>>
>>> On Mon, Jun 16, 2014 at 6:00 AM, Martijn Steenwijk <
>>> martijnsteenwijk at gmail.com> wrote:
>>>
>>>> To add on that. It seems that LayoutEdgePoints() is in its first
>>>> iteration (so i is 0 at line 530) - this is right after
>>>> initializeedgemesh().
>>>>
>>>> Best,
>>>> Martijn
>>>>
>>>>
>>>> On Mon, Jun 16, 2014 at 11:52 AM, Martijn Steenwijk <
>>>> martijnsteenwijk at gmail.com> wrote:
>>>>
>>>>>
>>>>> Hi Jeff,
>>>>>
>>>>> You're right. At first glance I thought that too, but then got a
>>>>> linker error message which was (after second reading) not related to VTK.
>>>>> Sorry, I should have looked better.
>>>>>
>>>>> Now it does compile, but I'm getting another error on calling Update()
>>>>> of vtkBoostDividedEdgeBundling: I use the same graph as in the
>>>>> TestBoostDividedEdgeBundling:
>>>>>
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(20, 40, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(20, 80, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(20, 120, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(20, 160, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(380, 40, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(380, 80, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(380, 120, 0);
>>>>> graph->AddVertex();
>>>>> points->InsertNextPoint(380, 160, 0);
>>>>> graph->SetPoints(points.GetPointer());
>>>>>
>>>>> graph->AddEdge(0, 4);
>>>>> graph->AddEdge(0, 5);
>>>>> graph->AddEdge(1, 4);
>>>>> graph->AddEdge(1, 5);
>>>>> graph->AddEdge(2, 6);
>>>>> graph->AddEdge(2, 7);
>>>>> graph->AddEdge(3, 6);
>>>>> graph->AddEdge(3, 7);
>>>>>
>>>>> graph->AddEdge(4, 0);
>>>>> graph->AddEdge(5, 0);
>>>>> graph->AddEdge(6, 0);
>>>>>
>>>>> Then a "vector subscript out of range" is thrown at line 368 of
>>>>> vtkBoostDividedEdgeBundling.cxx (see image):
>>>>> [image: Inline image 2]
>>>>>
>>>>> it tries to get this->EdgeMesh[e][index+1] where e=0 and index=1 (so
>>>>> element [0][2] is requested), but this->EdgeMesh[e] has length 2.
>>>>>
>>>>> Any thoughts how this can be solved?
>>>>>
>>>>> Best,
>>>>> Martijn
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Jun 16, 2014 at 3:49 AM, Jeff Baumes <jeff.baumes at kitware.com>
>>>>> wrote:
>>>>>
>>>>>> You should not need to turn on the vtkInfovisParallel module to
>>>>>> compile vtkBoostDividedEdgeBundling. You should be able to just turn
>>>>>> vtkInfovisBoostGraphAlgorithms on.
>>>>>>
>>>>>> Jeff
>>>>>>
>>>>>>
>>>>>> On Sat, Jun 14, 2014 at 4:38 AM, Martijn Steenwijk <
>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>
>>>>>>> Hi David,
>>>>>>>
>>>>>>> Thanks for your response. I'm building this module because I would
>>>>>>> like to use vtkBoostDevidedEdgeBundling which seems to rely on this module
>>>>>>> (i.e. If I do not compile the module I get a linker error). Or am I doing
>>>>>>> something wrong?
>>>>>>>
>>>>>>> Is there any quick fix for this?
>>>>>>>
>>>>>>> Thanks for your response,
>>>>>>> Martijn
>>>>>>>
>>>>>>> Verstuurd vanaf mijn iPhone
>>>>>>>
>>>>>>> Op 14 jun. 2014 om 00:55 heeft David E DeMarle <
>>>>>>> dave.demarle at kitware.com> het volgende geschreven:
>>>>>>>
>>>>>>> I had that compiling with boost 1.48 on one of the dashboard
>>>>>>> machines a while back.
>>>>>>>
>>>>>>> The module itself hasn't been maintained in a long while and thus I
>>>>>>> marked it as deprecated in master a few months back. If there is interest
>>>>>>> in it from the community and someone brings it up to date with current
>>>>>>> boost and supply tests for the module, I can undeprecate it before 6.2.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> David E DeMarle
>>>>>>> Kitware, Inc.
>>>>>>> R&D Engineer
>>>>>>> 21 Corporate Drive
>>>>>>> Clifton Park, NY 12065-8662
>>>>>>> Phone: 518-881-4909
>>>>>>>
>>>>>>>
>>>>>>> On Fri, Jun 13, 2014 at 5:51 PM, Martijn Steenwijk <
>>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hi all,
>>>>>>>>
>>>>>>>> I'm trying to compile VTK 6.1.0 on Windows (MSVC 2010) with Boost
>>>>>>>> 1.55.0 and openmpi 1.6.2. I'm getting an error while compiling
>>>>>>>> vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx. as listed below. It
>>>>>>>> seems that Boost misses some properties. Could this be related to the Boost
>>>>>>>> version (if so, what could be used best?)
>>>>>>>>
>>>>>>>> Any help would be appreciated.
>>>>>>>>
>>>>>>>> Best,
>>>>>>>> Martijn
>>>>>>>>
>>>>>>>> D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>> 94>
>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>> 94>
>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(365) : see
>>>>>>>> reference to function template instantiation 'void
>>>>>>>> boost::detail::parallel_bfs_helper<vtkDirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>> being compiled
>>>>>>>> 94> with
>>>>>>>> 94> [
>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>> 94> DistributedGraph=vtkDirectedGraph *,
>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>> 94>
>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>> 94> ]
>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>> 94>
>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>> arguments - 5 provided
>>>>>>>> 94>
>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>>> 94>
>>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>>> 94>
>>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(373) : see
>>>>>>>> reference to function template instantiation 'void
>>>>>>>> boost::detail::parallel_bfs_helper<vtkUndirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>>> being compiled
>>>>>>>> 94> with
>>>>>>>> 94> [
>>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>>> 94> DistributedGraph=vtkUndirectedGraph *,
>>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>>> 94>
>>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>>> 94> ]
>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>>> 94>
>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>>> arguments - 5 provided
>>>>>>>> 94>
>>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>>> 108>------ Build started: Project: ALL_BUILD, Configuration: Debug
>>>>>>>> Win32 ------
>>>>>>>> 108> Build all projects
>>>>>>>> ========== Build: 105 succeeded, 3 failed, 24 up-to-date, 0 skipped
>>>>>>>> ==========
>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the VTK FAQ at:
>>>>>>>> http://www.vtk.org/Wiki/VTK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://public.kitware.com/mailman/listinfo/vtkusers
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Please keep messages on-topic and check the VTK FAQ at:
>>>>>>> http://www.vtk.org/Wiki/VTK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://public.kitware.com/mailman/listinfo/vtkusers
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/vtkusers/attachments/20140616/c4af5267/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 157129 bytes
Desc: not available
URL: <http://public.kitware.com/pipermail/vtkusers/attachments/20140616/c4af5267/attachment-0001.png>
More information about the vtkusers
mailing list