[vtkusers] Error compiling vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx (VTK 6.1.0)
Jeff Baumes
jeff.baumes at kitware.com
Mon Jun 16 10:39:29 EDT 2014
See if it works if you change vtkFloatArray to vtkDoubleArray. May be
another issue of not testing all cases/systems.
Jeff
On Mon, Jun 16, 2014 at 10:37 AM, Martijn Steenwijk <
martijnsteenwijk at gmail.com> wrote:
> Hi Jeff,
>
> It does run, but does not give proper output. I tried to figure out what's
> going wrong. The filter returns 8 vertices and 11 edges, however the points
> have values
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
> -1.#IND -1.#IND -1.#IND
>
> I've the feeling th at it already goes wrong at the import of the points;
> i.e.
> vtkVector3f *nodes = reinterpret_cast<vtkVector3f*>(
>
> vtkFloatArray::SafeDownCast(g->GetPoints()->GetData())->GetPointer(0));
>
> std::cout << nodes[0][0] << std::cendl;
>
> gives already -1.#IND
>
> Best,
> Martijn
>
>
>
> On Mon, Jun 16, 2014 at 1:32 PM, Jeff Baumes <jeff.baumes at kitware.com>
> wrote:
>
>> Looks to me like you caught a bug. This does indeed sometimes go off the
>> end of the array, but the potential junk data it gets is always multiplied
>> with an alpha value of 0, so the algorithm still functions properly. It
>> seems this code may not currently be tested in an environment with runtime
>> bounds-checking exceptions. Modifiying the loop with an additional check
>> may resolve the problem (though on my Mac I am not getting the runtime
>> error even though it was going past the end of the array):
>>
>> for (vtkIdType e = 0; e < numEdges; ++e)
>> {
>> for (int m = 0; m < newMeshCount; ++m)
>> {
>> float indexFloat = (this->MeshCount - 1.0f)*m/(newMeshCount - 1.0f);
>> int index = static_cast<int>(indexFloat);
>> float alpha = indexFloat - index;
>> vtkVector3f before = this->EdgeMesh[e][index];
>> if (alpha > 0)
>> {
>> vtkVector3f after = this->EdgeMesh[e][index+1];
>> newEdgeMesh[e][m] = before + alpha*(after - before);
>> }
>> else
>> {
>> newEdgeMesh[e][m] = before;
>> }
>> }
>> }
>>
>> Let me know if this works for you and we can get a fix into VTK.
>>
>> Jeff
>>
>>
>> On Mon, Jun 16, 2014 at 6:00 AM, Martijn Steenwijk <
>> martijnsteenwijk at gmail.com> wrote:
>>
>>> To add on that. It seems that LayoutEdgePoints() is in its first
>>> iteration (so i is 0 at line 530) - this is right after
>>> initializeedgemesh().
>>>
>>> Best,
>>> Martijn
>>>
>>>
>>> On Mon, Jun 16, 2014 at 11:52 AM, Martijn Steenwijk <
>>> martijnsteenwijk at gmail.com> wrote:
>>>
>>>>
>>>> Hi Jeff,
>>>>
>>>> You're right. At first glance I thought that too, but then got a linker
>>>> error message which was (after second reading) not related to VTK. Sorry, I
>>>> should have looked better.
>>>>
>>>> Now it does compile, but I'm getting another error on calling Update()
>>>> of vtkBoostDividedEdgeBundling: I use the same graph as in the
>>>> TestBoostDividedEdgeBundling:
>>>>
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(20, 40, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(20, 80, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(20, 120, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(20, 160, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(380, 40, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(380, 80, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(380, 120, 0);
>>>> graph->AddVertex();
>>>> points->InsertNextPoint(380, 160, 0);
>>>> graph->SetPoints(points.GetPointer());
>>>>
>>>> graph->AddEdge(0, 4);
>>>> graph->AddEdge(0, 5);
>>>> graph->AddEdge(1, 4);
>>>> graph->AddEdge(1, 5);
>>>> graph->AddEdge(2, 6);
>>>> graph->AddEdge(2, 7);
>>>> graph->AddEdge(3, 6);
>>>> graph->AddEdge(3, 7);
>>>>
>>>> graph->AddEdge(4, 0);
>>>> graph->AddEdge(5, 0);
>>>> graph->AddEdge(6, 0);
>>>>
>>>> Then a "vector subscript out of range" is thrown at line 368 of
>>>> vtkBoostDividedEdgeBundling.cxx (see image):
>>>> [image: Inline image 2]
>>>>
>>>> it tries to get this->EdgeMesh[e][index+1] where e=0 and index=1 (so
>>>> element [0][2] is requested), but this->EdgeMesh[e] has length 2.
>>>>
>>>> Any thoughts how this can be solved?
>>>>
>>>> Best,
>>>> Martijn
>>>>
>>>>
>>>>
>>>>
>>>> On Mon, Jun 16, 2014 at 3:49 AM, Jeff Baumes <jeff.baumes at kitware.com>
>>>> wrote:
>>>>
>>>>> You should not need to turn on the vtkInfovisParallel module to
>>>>> compile vtkBoostDividedEdgeBundling. You should be able to just turn
>>>>> vtkInfovisBoostGraphAlgorithms on.
>>>>>
>>>>> Jeff
>>>>>
>>>>>
>>>>> On Sat, Jun 14, 2014 at 4:38 AM, Martijn Steenwijk <
>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>
>>>>>> Hi David,
>>>>>>
>>>>>> Thanks for your response. I'm building this module because I would
>>>>>> like to use vtkBoostDevidedEdgeBundling which seems to rely on this module
>>>>>> (i.e. If I do not compile the module I get a linker error). Or am I doing
>>>>>> something wrong?
>>>>>>
>>>>>> Is there any quick fix for this?
>>>>>>
>>>>>> Thanks for your response,
>>>>>> Martijn
>>>>>>
>>>>>> Verstuurd vanaf mijn iPhone
>>>>>>
>>>>>> Op 14 jun. 2014 om 00:55 heeft David E DeMarle <
>>>>>> dave.demarle at kitware.com> het volgende geschreven:
>>>>>>
>>>>>> I had that compiling with boost 1.48 on one of the dashboard machines
>>>>>> a while back.
>>>>>>
>>>>>> The module itself hasn't been maintained in a long while and thus I
>>>>>> marked it as deprecated in master a few months back. If there is interest
>>>>>> in it from the community and someone brings it up to date with current
>>>>>> boost and supply tests for the module, I can undeprecate it before 6.2.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> David E DeMarle
>>>>>> Kitware, Inc.
>>>>>> R&D Engineer
>>>>>> 21 Corporate Drive
>>>>>> Clifton Park, NY 12065-8662
>>>>>> Phone: 518-881-4909
>>>>>>
>>>>>>
>>>>>> On Fri, Jun 13, 2014 at 5:51 PM, Martijn Steenwijk <
>>>>>> martijnsteenwijk at gmail.com> wrote:
>>>>>>
>>>>>>> Hi all,
>>>>>>>
>>>>>>> I'm trying to compile VTK 6.1.0 on Windows (MSVC 2010) with Boost
>>>>>>> 1.55.0 and openmpi 1.6.2. I'm getting an error while compiling
>>>>>>> vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx. as listed below. It
>>>>>>> seems that Boost misses some properties. Could this be related to the Boost
>>>>>>> version (if so, what could be used best?)
>>>>>>>
>>>>>>> Any help would be appreciated.
>>>>>>>
>>>>>>> Best,
>>>>>>> Martijn
>>>>>>>
>>>>>>> D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>> 94>
>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>> 94>
>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(365) : see
>>>>>>> reference to function template instantiation 'void
>>>>>>> boost::detail::parallel_bfs_helper<vtkDirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>> being compiled
>>>>>>> 94> with
>>>>>>> 94> [
>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>> 94> DistributedGraph=vtkDirectedGraph *,
>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>> 94>
>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>> 94> ]
>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>> 94>
>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>> arguments - 5 provided
>>>>>>> 94>
>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>> error C2039: 'ref' : is not a member of
>>>>>>> 'boost::detail::error_property_not_found'
>>>>>>> 94>
>>>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>>>> 94>
>>>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(373) : see
>>>>>>> reference to function template instantiation 'void
>>>>>>> boost::detail::parallel_bfs_helper<vtkUndirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>>>> being compiled
>>>>>>> 94> with
>>>>>>> 94> [
>>>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>>>> 94> DistributedGraph=vtkUndirectedGraph *,
>>>>>>> 94> ColorMap=DistributedColorMap,
>>>>>>> 94>
>>>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>>>> 94> ]
>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>>>> 94>
>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>>>> arguments - 5 provided
>>>>>>> 94>
>>>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>>>> declaration of 'boost::breadth_first_search'
>>>>>>> 108>------ Build started: Project: ALL_BUILD, Configuration: Debug
>>>>>>> Win32 ------
>>>>>>> 108> Build all projects
>>>>>>> ========== Build: 105 succeeded, 3 failed, 24 up-to-date, 0 skipped
>>>>>>> ==========
>>>>>>>
>>>>>>>
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>>>>>>
>>>>>> _______________________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
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>>>>>>
>>>>>> Please keep messages on-topic and check the VTK FAQ at:
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>>>>>>
>>>>>
>>>>
>>>
>>
>
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