[Paraview] Superbuild, CGNS and debug

Utkarsh Ayachit utkarsh.ayachit at kitware.com
Fri Mar 13 20:51:04 EDT 2015


I don't follow...what do you mean by "get a debugger into a CGNS build
of ParaView"? You are getting these errors when building ParaView or
running in in a debugger?

On Fri, Mar 13, 2015 at 8:19 PM, Scott, W Alan <wascott at sandia.gov> wrote:
> I am trying to get a debugger into a CGNS build of ParaView.  CGNS builds
> seems to be dying trying to link to HDF5.  Has anyone else seen this?  Any
> ideas how to compile debug with CGNS and the Superbuild?
>
> Here is some of the errors that I am seeing:
>
> checking whether build environment is sane... ../libcgns.so.3.1: undefined
> reference to `H5T_NATIVE_INT32_g'
> ../libcgns.so.3.1: undefined reference to `H5P_CLS_FILE_CREATE_g'
> ../libcgns.so.3.1: undefined reference to `H5Pcreate'
> ../libcgns.so.3.1: undefined reference to `H5Tcopy'
> ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UINT32_g'
> ../libcgns.so.3.1: undefined reference to `H5Sget_simple_extent_dims'
> ../libcgns.so.3.1: undefined reference to `H5Eset_auto2'
> ../libcgns.so.3.1: undefined reference to `H5Sget_simple_extent_ndims'
> ../libcgns.so.3.1: undefined reference to `H5Aget_type'
> ../libcgns.so.3.1: undefined reference to `H5Fcreate'
> ../libcgns.so.3.1: undefined reference to `H5Sset_extent_simple'
> ../libcgns.so.3.1: undefined reference to `H5Sclose'
> ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_SCHAR_g'
> ../libcgns.so.3.1: undefined reference to `H5Aopen_name'
> ../libcgns.so.3.1: undefined reference to `H5Gunlink'
> ../libcgns.so.3.1: undefined reference to `H5Lget_val'
> ../libcgns.so.3.1: undefined reference to `H5Tget_native_type'
> ../libcgns.so.3.1: undefined reference to `H5Acreate2'
> ../libcgns.so.3.1: undefined reference to `H5Aclose'
> ../libcgns.so.3.1: undefined reference to `H5Pset_deflate'
> ../libcgns.so.3.1: undefined reference to `H5T_C_S1_g'
> ../libcgns.so.3.1: undefined reference to `H5Tset_precision'
> ../libcgns.so.3.1: undefined reference to `H5Dopen2'
> ../libcgns.so.3.1: undefined reference to `H5Dget_type'
> ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_FLOAT_g'
> ../libcgns.so.3.1: undefined reference to `H5Lunpack_elink_val'
> ../libcgns.so.3.1: undefined reference to `H5Dwrite'
> ../libcgns.so.3.1: undefined reference to `H5Lcreate_external'
> ../libcgns.so.3.1: undefined reference to `H5Dget_storage_size'
> ../libcgns.so.3.1: undefined reference to `H5Screate_simple'
> ../libcgns.so.3.1: undefined reference to `H5Aread'
> ../libcgns.so.3.1: undefined reference to `H5check_version'
> ../libcgns.so.3.1: undefined reference to `H5Iget_name'
> ../libcgns.so.3.1: undefined reference to `H5Lis_registered'
> ../libcgns.so.3.1: undefined reference to `H5Fget_obj_ids'
> ../libcgns.so.3.1: undefined reference to `H5P_CLS_GROUP_CREATE_g'
> ../libcgns.so.3.1: undefined reference to `H5Gcreate2'
> ../libcgns.so.3.1: undefined reference to `H5Giterate'
> ../libcgns.so.3.1: undefined reference to `H5Tget_size'
> ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UCHAR_g'
> ../libcgns.so.3.1: undefined reference to `H5Screate'
> ../libcgns.so.3.1: undefined reference to `H5T_IEEE_F32BE_g'
> ../libcgns.so.3.1: undefined reference to `H5Literate'
> ../libcgns.so.3.1: undefined reference to `H5Gopen2'
> ../libcgns.so.3.1: undefined reference to `H5Dset_extent'
> ../libcgns.so.3.1: undefined reference to `H5T_IEEE_F64BE_g'
> ../libcgns.so.3.1: undefined reference to `H5Dget_space'
> ../libcgns.so.3.1: undefined reference to `H5Dclose'
> ../libcgns.so.3.1: undefined reference to `H5P_CLS_FILE_ACCESS_g'
> ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UINT64_g'
>
> Thanks,
>
> Alan
>
>
>
>
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