[Paraview] Superbuild, CGNS and debug

Scott, W Alan wascott at sandia.gov
Fri Mar 13 20:19:41 EDT 2015


I am trying to get a debugger into a CGNS build of ParaView.  CGNS builds seems to be dying trying to link to HDF5.  Has anyone else seen this?  Any ideas how to compile debug with CGNS and the Superbuild?

Here is some of the errors that I am seeing:

checking whether build environment is sane... ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_INT32_g'
../libcgns.so.3.1: undefined reference to `H5P_CLS_FILE_CREATE_g'
../libcgns.so.3.1: undefined reference to `H5Pcreate'
../libcgns.so.3.1: undefined reference to `H5Tcopy'
../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UINT32_g'
../libcgns.so.3.1: undefined reference to `H5Sget_simple_extent_dims'
../libcgns.so.3.1: undefined reference to `H5Eset_auto2'
../libcgns.so.3.1: undefined reference to `H5Sget_simple_extent_ndims'
../libcgns.so.3.1: undefined reference to `H5Aget_type'
../libcgns.so.3.1: undefined reference to `H5Fcreate'
../libcgns.so.3.1: undefined reference to `H5Sset_extent_simple'
../libcgns.so.3.1: undefined reference to `H5Sclose'
../libcgns.so.3.1: undefined reference to `H5T_NATIVE_SCHAR_g'
../libcgns.so.3.1: undefined reference to `H5Aopen_name'
../libcgns.so.3.1: undefined reference to `H5Gunlink'
../libcgns.so.3.1: undefined reference to `H5Lget_val'
../libcgns.so.3.1: undefined reference to `H5Tget_native_type'
../libcgns.so.3.1: undefined reference to `H5Acreate2'
../libcgns.so.3.1: undefined reference to `H5Aclose'
../libcgns.so.3.1: undefined reference to `H5Pset_deflate'
../libcgns.so.3.1: undefined reference to `H5T_C_S1_g'
../libcgns.so.3.1: undefined reference to `H5Tset_precision'
../libcgns.so.3.1: undefined reference to `H5Dopen2'
../libcgns.so.3.1: undefined reference to `H5Dget_type'
../libcgns.so.3.1: undefined reference to `H5T_NATIVE_FLOAT_g'
../libcgns.so.3.1: undefined reference to `H5Lunpack_elink_val'
../libcgns.so.3.1: undefined reference to `H5Dwrite'
../libcgns.so.3.1: undefined reference to `H5Lcreate_external'
../libcgns.so.3.1: undefined reference to `H5Dget_storage_size'
../libcgns.so.3.1: undefined reference to `H5Screate_simple'
../libcgns.so.3.1: undefined reference to `H5Aread'
../libcgns.so.3.1: undefined reference to `H5check_version'
../libcgns.so.3.1: undefined reference to `H5Iget_name'
../libcgns.so.3.1: undefined reference to `H5Lis_registered'
../libcgns.so.3.1: undefined reference to `H5Fget_obj_ids'
../libcgns.so.3.1: undefined reference to `H5P_CLS_GROUP_CREATE_g'
../libcgns.so.3.1: undefined reference to `H5Gcreate2'
../libcgns.so.3.1: undefined reference to `H5Giterate'
../libcgns.so.3.1: undefined reference to `H5Tget_size'
../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UCHAR_g'
../libcgns.so.3.1: undefined reference to `H5Screate'
../libcgns.so.3.1: undefined reference to `H5T_IEEE_F32BE_g'
../libcgns.so.3.1: undefined reference to `H5Literate'
../libcgns.so.3.1: undefined reference to `H5Gopen2'
../libcgns.so.3.1: undefined reference to `H5Dset_extent'
../libcgns.so.3.1: undefined reference to `H5T_IEEE_F64BE_g'
../libcgns.so.3.1: undefined reference to `H5Dget_space'
../libcgns.so.3.1: undefined reference to `H5Dclose'
../libcgns.so.3.1: undefined reference to `H5P_CLS_FILE_ACCESS_g'
../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UINT64_g'

Thanks,

Alan



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