[Paraview-developers] paraview superbuild

Mon Jul 1 12:48:23 EDT 2013

Hmm, looks like hdf5 is having trouble building on your setup. You can
try to figure out what configuration parameters would work for hdf5
and then update hdf5.cmake in the ParaView superbuild to make it work.
The hdf5 source and build tree under the superbuild are
ParaViewSuperbuild_build/hdf/src/hdf5 and
ParaViewSuperbuild_build/hdf/src/hdf5-build.

Utkarsh

On Mon, Jul 1, 2013 at 12:23 PM, Paul Edwards <paul.m.edwards at gmail.com> wrote:
> That fails here now:
>
> ....
> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:873:44:
> warning: (near initialization for ‘callbacks’) [enabled by default]
> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:920:18:
> error: request for member ‘udata’ in something not a structure or
> union
> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:923:9:
> warning: implicit declaration of function
> ‘H5Pset_file_image_callbacks’ [-Wimplicit-function-declaration]
> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:930:5:
> warning: implicit declaration of function ‘H5Pset_file_image’
> [-Wimplicit-function-declaration]
> gmake[5]: *** [hl/src/CMakeFiles/hdf5_hl.dir/H5LT.c.o] Error 1
> gmake[5]: *** Waiting for unfinished jobs....
> gmake[4]: *** [hl/src/CMakeFiles/hdf5_hl.dir/all] Error 2
> gmake[3]: *** [all] Error 2
> CMake Error at /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/pv-hdf5-build.cmake:26
> (message):
>   Failed!!!
>
> Regards,
> Paul
>
> On 1 July 2013 16:14, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
>> Can you try turning on HDF5 from the Superbuild as well?
>>
>> On Mon, Jul 1, 2013 at 11:05 AM, Paul Edwards <paul.m.edwards at gmail.com> wrote:
>>> Hi Utkarsh,
>>>
>>> Rerunning the build in serial gives this:
>>>
>>> 8<-------------------------------------------------------------------------
>>> ...
>>> ...
>>> Scanning dependencies of target vtkWrappingPythonCore
>>> [  6%] Building CXX object
>>> VTK/Utilities/PythonInterpreter/CMakeFiles/vtkPythonInterpreter.dir/vtkPythonInterpreter.cxx.o
>>> [  6%] Scanning dependencies of target vtkCommonSystem
>>> Building CXX object
>>> VTK/Wrapping/PythonCore/CMakeFiles/vtkWrappingPythonCore.dir/vtkPythonArgs.cxx.o
>>> [  6%] Scanning dependencies of target vtkCommonMath
>>> Building CXX object
>>> VTK/Common/System/CMakeFiles/vtkCommonSystem.dir/vtkClientSocket.cxx.o
>>> [  6%] Building CXX object
>>> VTK/Common/Math/CMakeFiles/vtkCommonMath.dir/vtkAmoebaMinimizer.cxx.o
>>> [  6%] Building C object
>>> VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5FDlog.c.o
>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:212:5:
>>> error: ‘off64_t’ undeclared here (not in a function)
>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:
>>> In function ‘H5FD_log_read’:
>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:1089:48:
>>> error: expected ‘)’ before ‘addr’
>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:
>>> In function ‘H5FD_log_write’:
>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:1201:47:
>>> error: expected ‘)’ before ‘addr’
>>> gmake[5]: *** [VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5FDlog.c.o]
>>> Error 1
>>> gmake[4]: *** [VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/all]
>>> Error 2
>>> gmake[4]: *** Waiting for unfinished jobs....
>>> ------------------------------------------------------------------------->8
>>>
>>> I think this must be a problem configuring something as this compiles
>>> here when using the superbuild without Python...
>>>
>>> ...and, I can make it work with python when building the dependencies
>>> myself (same versions) and then ParaView from source.
>>>
>>> I was hoping to make my life easier using the superbuild ;)
>>>
>>> Please let me know if you know what is going wrong.
>>>
>>> Thanks,
>>> Paul
>>>
>>>
>>>
>>> On 1 July 2013 15:30, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
>>>> Paul, are you doing a parallel build? Can you try without the "-j". It
>>>> should atleast make the error message a bit easier to read.
>>>>
>>>> Utkarsh
>>>>
>>>> On Mon, Jul 1, 2013 at 10:18 AM, Paul Edwards <paul.m.edwards at gmail.com> wrote:
>>>>> Hi,
>>>>>
>>>>> I'm trying to use the ParaViewSuperbuild (for v4.0.1) on suse 12.1 but
>>>>> it is failing as soon as I try to include python.
>>>>>
>>>>> 8<---------------------------------------------------------------------
>>>>> ...
>>>>> [  5%] Generating ../H5lib_settings.c
>>>>> libhdf5.settings: No such file or directory
>>>>> gmake[5]: *** [VTK/ThirdParty/hdf5/vtkhdf5/H5lib_settings.c] Error 1
>>>>> gmake[4]: *** [VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/all]
>>>>> Error 2
>>>>> gmake[4]: *** Waiting for unfinished jobs....
>>>>> ...
>>>>> ...
>>>>> Linking C shared module ../../../lib/site-packages/mpi4py/MPI.so
>>>>> [  5%] Built target mpi4py.MPI
>>>>> gmake[3]: *** [all] Error 2
>>>>> CMake Error at /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/pv-paraview-build.cmake:26
>>>>> (message):
>>>>>   Failed!!!
>>>>> --------------------------------------------------------------------->8
>>>>>
>>>>> I'm struggling to find out where the actual problem is here.  Any ideas?
>>>>>
>>>>> Thanks,
>>>>> Paul
>>>>> _______________________________________________
>>>>> Paraview-developers mailing list
>>>>> Paraview-developers at paraview.org
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