[Paraview-developers] paraview superbuild

Mon Jul 1 12:52:56 EDT 2013

Ok thanks.  Why is it that python requires HDF5?  I was actually
hoping to use my own version - is this possible? (but not the system
one....)

On 1 July 2013 17:48, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
> Hmm, looks like hdf5 is having trouble building on your setup. You can
> try to figure out what configuration parameters would work for hdf5
> and then update hdf5.cmake in the ParaView superbuild to make it work.
> The hdf5 source and build tree under the superbuild are
> ParaViewSuperbuild_build/hdf/src/hdf5 and
> ParaViewSuperbuild_build/hdf/src/hdf5-build.
>
> Utkarsh
>
> On Mon, Jul 1, 2013 at 12:23 PM, Paul Edwards <paul.m.edwards at gmail.com> wrote:
>> That fails here now:
>>
>> ....
>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:873:44:
>> warning: (near initialization for ‘callbacks’) [enabled by default]
>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:920:18:
>> error: request for member ‘udata’ in something not a structure or
>> union
>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:923:9:
>> warning: implicit declaration of function
>> ‘H5Pset_file_image_callbacks’ [-Wimplicit-function-declaration]
>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/hdf5/src/hdf5/hl/src/H5LT.c:930:5:
>> warning: implicit declaration of function ‘H5Pset_file_image’
>> [-Wimplicit-function-declaration]
>> gmake[5]: *** [hl/src/CMakeFiles/hdf5_hl.dir/H5LT.c.o] Error 1
>> gmake[5]: *** Waiting for unfinished jobs....
>> gmake[4]: *** [hl/src/CMakeFiles/hdf5_hl.dir/all] Error 2
>> gmake[3]: *** [all] Error 2
>> CMake Error at /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/pv-hdf5-build.cmake:26
>> (message):
>>   Failed!!!
>>
>> Regards,
>> Paul
>>
>> On 1 July 2013 16:14, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
>>> Can you try turning on HDF5 from the Superbuild as well?
>>>
>>> On Mon, Jul 1, 2013 at 11:05 AM, Paul Edwards <paul.m.edwards at gmail.com> wrote:
>>>> Hi Utkarsh,
>>>>
>>>> Rerunning the build in serial gives this:
>>>>
>>>> 8<-------------------------------------------------------------------------
>>>> ...
>>>> ...
>>>> Scanning dependencies of target vtkWrappingPythonCore
>>>> [  6%] Building CXX object
>>>> VTK/Utilities/PythonInterpreter/CMakeFiles/vtkPythonInterpreter.dir/vtkPythonInterpreter.cxx.o
>>>> [  6%] Scanning dependencies of target vtkCommonSystem
>>>> Building CXX object
>>>> VTK/Wrapping/PythonCore/CMakeFiles/vtkWrappingPythonCore.dir/vtkPythonArgs.cxx.o
>>>> [  6%] Scanning dependencies of target vtkCommonMath
>>>> Building CXX object
>>>> VTK/Common/System/CMakeFiles/vtkCommonSystem.dir/vtkClientSocket.cxx.o
>>>> [  6%] Building CXX object
>>>> VTK/Common/Math/CMakeFiles/vtkCommonMath.dir/vtkAmoebaMinimizer.cxx.o
>>>> [  6%] Building C object
>>>> VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5FDlog.c.o
>>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:212:5:
>>>> error: ‘off64_t’ undeclared here (not in a function)
>>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:
>>>> In function ‘H5FD_log_read’:
>>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:1089:48:
>>>> error: expected ‘)’ before ‘addr’
>>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:
>>>> In function ‘H5FD_log_write’:
>>>> /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/paraview/src/paraview/VTK/ThirdParty/hdf5/vtkhdf5/src/H5FDlog.c:1201:47:
>>>> error: expected ‘)’ before ‘addr’
>>>> gmake[5]: *** [VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5FDlog.c.o]
>>>> Error 1
>>>> gmake[4]: *** [VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/all]
>>>> Error 2
>>>> gmake[4]: *** Waiting for unfinished jobs....
>>>> ------------------------------------------------------------------------->8
>>>>
>>>> I think this must be a problem configuring something as this compiles
>>>> here when using the superbuild without Python...
>>>>
>>>> ...and, I can make it work with python when building the dependencies
>>>> myself (same versions) and then ParaView from source.
>>>>
>>>> I was hoping to make my life easier using the superbuild ;)
>>>>
>>>> Please let me know if you know what is going wrong.
>>>>
>>>> Thanks,
>>>> Paul
>>>>
>>>>
>>>>
>>>> On 1 July 2013 15:30, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
>>>>> Paul, are you doing a parallel build? Can you try without the "-j". It
>>>>> should atleast make the error message a bit easier to read.
>>>>>
>>>>> Utkarsh
>>>>>
>>>>> On Mon, Jul 1, 2013 at 10:18 AM, Paul Edwards <paul.m.edwards at gmail.com> wrote:
>>>>>> Hi,
>>>>>>
>>>>>> I'm trying to use the ParaViewSuperbuild (for v4.0.1) on suse 12.1 but
>>>>>> it is failing as soon as I try to include python.
>>>>>>
>>>>>> 8<---------------------------------------------------------------------
>>>>>> ...
>>>>>> [  5%] Generating ../H5lib_settings.c
>>>>>> libhdf5.settings: No such file or directory
>>>>>> gmake[5]: *** [VTK/ThirdParty/hdf5/vtkhdf5/H5lib_settings.c] Error 1
>>>>>> gmake[4]: *** [VTK/ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/all]
>>>>>> Error 2
>>>>>> gmake[4]: *** Waiting for unfinished jobs....
>>>>>> ...
>>>>>> ...
>>>>>> Linking C shared module ../../../lib/site-packages/mpi4py/MPI.so
>>>>>> [  5%] Built target mpi4py.MPI
>>>>>> gmake[3]: *** [all] Error 2
>>>>>> CMake Error at /users/zephyr01/paul/dev/src/iconCFD-dev/ThirdParty/build/openmpi-1.6.4/ParaViewSuperbuild_build/pv-paraview-build.cmake:26
>>>>>> (message):
>>>>>>   Failed!!!
>>>>>> --------------------------------------------------------------------->8
>>>>>>
>>>>>> I'm struggling to find out where the actual problem is here.  Any ideas?
>>>>>>
>>>>>> Thanks,
>>>>>> Paul
>>>>>> _______________________________________________
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