[Insight-users] mesh creation from segmented image

[Bill Lorensen]

Miladi,

If your data is 3D, I would use vtkDiscreteMarchingCues which is desigend to
work with segmented data. Once created, it can be smoothed with
vtkWindowedSincPolyDataFilter.

Bill


On 4/5/07, Luis Ibanez <luis.ibanez at kitware.com> wrote:
>
>
> Hi Miladi,
>
> Please read the ITK Software Guide:
>
>     http://www.itk.org/ItkSoftwareGuide.pdf
>
> You will find examples on how to read multiple 2D
> slice files into a single 3D image in section 7.11.1
> "Reading Image Series" in pdf-page 319.
>
> The source code example can be found in
>
>    Insight/Examples/IO/ImageSeriesReadWrite.cxx
>
>
>
> For an example on how to use the VTK marching
> cubes on an ITK image, please look at:
>
>
>    InsightApplications/Auxiliary/vtk/
>        itkReadITKImage3DSegmentShowVTK.cxx
>
> It shows how to convert an ITK image into vtkImageData
> and then pass it to the vtkContour filter.
>
>
>      Regards,
>
>
>         Luis
>
>
>
> -------------------------
> Miladi Med Amine wrote:
> > Hi,
> > thanks you for help.
> > can you let me how get the 3d binary image from slices.
> > Now i m thinking about marching cube marching cube algorithme using
> > vtkImageMarchingCubes,so can you if you knew ho to use this filter and
> > can it get segmented slices as my exemple.
> > thanks
> >
> > */Luis Ibanez <luis.ibanez at kitware.com>/* a écrit :
> >
> >
> >     Hi Miladi,
> >
> >     Thanks for sending your example images.
> >
> >     Given that you already have segmentations for
> >     each slice, the easy way to generate a contour
> >     is to take the 3D binary image that you have
> >     and to pass it to the filter:
> >
> >
> http://www.itk.org/Insight/Doxygen/html/classitk_1_1BinaryMask3DMeshSource.html
> >
> >     This filter will produce an itkMesh that is the
> >     contour of the segmentation.
> >
> >     This is interesting if you plan to do something
> >     like Deformable Models.
> >
> >
> >     Note that if your purpose is to do visualization
> >     of the contour, then you will find more useful
> >     to convert the ITK image of the segmentation into
> >     a VTK image, and then pass it to the vtkContour filter.
> >
> >     You will find examples on how to do this in the
> >     directory:
> >
> >     InsightApplications/Auxiliary/vtk/
> >     itkReadITKImage3DSegmentShowVTK.cxx
> >
> >
> >
> >     Regards,
> >
> >
> >     Luis
> >
> >
> >
> >     -------------------------
> >     Miladi Med Amine wrote:
> >      > Hi Luis;
> >      > my question is what is the way to create a mesh of endocade for
> >      > exemple.i have a series of image as the exemple sended to you
> >      > representing the object.
> >      > and i would like to get some point the contour for each image,and
> >     create
> >      > the mesh.
> >      > There's a way in itk to do that.
> >      >
> >      > Thanks
> >      > MILADI
> >      >
> >      > ----- Message d'origine ----
> >      > De : Luis Ibanez
> >      > À : Miladi Med Amine
> >      > Envoyé le : Mardi, 27 Mars 2007, 16h30mn 16s
> >      > Objet : Re: Re : [Insight-users] mesh creation from segmented
> image
> >      >
> >      > Hi Miladi,
> >      >
> >      >
> >      > What is your question ?
> >      >
> >      >
> >      > Thanks
> >      >
> >      >
> >      > Luis
> >      >
> >      >
> >      > ------------------------
> >      > Miladi Med Amine wrote:
> >      > >
> >      > > hi;
> >      > > I would like to help me more.
> >      > > So i have a series of segmented image of endocade,and my
> >     objectif is to
> >      > > create a mesh to modelise the endocade using itk.
> >      > > thanks
> >      > > ----- Message d'origine ----
> >      > > De : Luis Ibanez
> >      > > À : medamine
> >      > > Cc : insight-users at itk.org
> >      > > Envoyé le : Lundi, 26 Mars 2007, 0h45mn 37s
> >      > > Objet : Re: [Insight-users] mesh creation from segmented image
> >      > >
> >      > > Hi Medamine,
> >      > >
> >      > > You may want to look at this filter:
> >      > >
> >      > >
> >      >
> >
> http://www.itk.org/Insight/Doxygen/html/classitk_1_1BinaryMask3DMeshSource.html
> >      > >
> >      > >
> >      > > Regards,
> >      > >
> >      > >
> >      > > Luis
> >      > >
> >      > >
> >      > >
> >      > > --------------------
> >      > > medamine wrote:
> >      > > > hi .
> >      > > > i would like to create a mesh from a segmented
> >     image(endocade),and i m
> >      > > > thinking about using snake to get cordonates of "contour".
> >      > > > my question there's a methode to do that using itk?
> >      > > > thanks for all.
> >      > >
> >      > >
> >      > >
> >
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