[Insight-users] Build Poblems

Tue Jul 27 17:51:33 EDT 2004

Hi Yuanxin,

You *should not* execute

        "cmake .  "

inside a *subdirectory* of InsightApplications.

InsightApplications is organized for being
configured ONLY from the top subdirectory.

You must run CMake in the top directory.

If you only want to build this application,
you can CD in to the specific directory and
type "make" only there.

You should not modify the CMakeLists.txt files,
they will work without changes as long as you
run CMake properly from the top directory.

Regards,

    Luis

----------------------
Yuanxin Zhu wrote:

> Hi Luis,
> 
> I have successfully run both cmake and make in the top directory of
> InsightApplications. But I have problems in building SegmentationEditor
> which was not automatically built by the above commands.
> 
> After I issued "camke ." inside the SegmentationEditor directory,  I got
> the following error message:
> 
> CMake Error: Error in cmake code at
> /home/zhu4/packages/itk/InsightApplications/SegmentationEditor/Common/CMakeLists.txt:17:
> Unknown CMake command "VTK_WRAP_TCL2".
> 
> I then went ahead to change "VTK_WRAP_TCL2" to "VTK_WRAP_TCL" in the
> CMakeLists.txt. it went through this time. Was that a bug?
> 
> However, when I then run "make" inside the SegmentationEditor directory,
> it reports a lot of errors. Below I list the first several lines:
> 
> yangtze:/home/zhu4[232]> make
> cmake.depends is up-to-date
> /home/zhu4/packages/itk/InsightApplications/SegmentationEditor/Common:
> building default_target
> Building dependencies. cmake.depends...
> Building object file vtkBinaryVolume.o...
> In file included from
> /home/zhu4/packages/itk/InsightApplications/SegmentationEditor/Common/vtkBinaryVolume.cxx:18:
> /home/zhu4/packages/itk/InsightApplications/SegmentationEditor/Common/vtkBinaryVolume.h:24:26:
> vtkImageData.h: No such file or directory
> 
> It seems that it couldn't find "vtkImageData.h". Anything I'm missing?
> 
> Please help. Thank you very much in advance.
> 
> Yuanxin
> 
> ------------------------------------------------------------------
> 
> On Tue, 27 Jul 2004, Luis Ibanez wrote:
> 
> 
>>Hi Huss,
>>
>>Could you please post also (to the users-list)
>>the Makefile from the directory
>>
>>home/hussain/ITK/App_binary/AnisotrpicsDifffusionsImageFilter
>>
>>
>>Did you build ITK without error ?
>>
>>Did you verified that ITKCommon.lib is in the /bin
>>subdirectory of C:/cygwin/home/hussain/ITK/Insight_binary    ?
>>
>>
>>
>>Thanks
>>
>>
>>    Luis
>>
>>
>>----------------------------------------------
>>Huss wrote:
>>
>>
>>>Hello Luis,
>>>
>>>1) I did run CMake at the top level of InsightApplications directory.
>>>
>>>2) I also provided the ITK_DIR path.
>>>
>>>3) My CMakeCache.txt looks like following:
>>>   Its and attachment to the mail.
>>>
>>>Thanks for all your help.
>>>Huss
>>>
>>>
>>>On Tue, 27 Jul 2004 09:38:40 -0400, Luis Ibanez <luis.ibanez at kitware.com> wrote:
>>>
>>>
>>>>Hi Huss,
>>>>
>>>>1) Did you run CMake at the top level of the
>>>>  InsightApplications directory ?
>>>>
>>>>2) Did you provided ITK_DIR ?
>>>>
>>>>3) Please post the CMakeCache.txt file that CMake
>>>>  generated in the binary directory where you are
>>>>  trying to build InsightApplications.
>>>>
>>>>Thanks
>>>>
>>>>  Luis
>>>>
>>>>-----------------
>>>>
>>>>
>>>>Huss wrote:
>>>>
>>>>
>>>>
>>>>>Hello Insight Users,
>>>>>
>>>>>I configured the "InsightApplications-1.6.0" and also generated the makefiles.
>>>>>Now when i initiate the build process it gives me the following errors:
>>>>>
>>>>>/usr/lib/gcc-lib/i686-pc-cygwin/3.3.1/../../../i686-pc-cygwin/bin/1d:
>>>>>cannot find :1ITK common
>>>>>collect2: 1d returned 1 exit status
>>>>>make[3]: *** [home/hussain/ITK/App_binary/AnisotrpicsDifffusionsImageFilter/itk2D/AnisotropicDiffusionImageFilter.exe]
>>>>>Error1
>>>>>make[2]: *** [default_target] Error 2
>>>>>make[1]: *** [defalut_traget_AnisotropicDiffusionImageFilter] Error 2
>>>>>make: *** [default_traget] Error 2
>>>>>
>>>>>Please let me know how to resolve this
>>>>>Thanks
>>>>>Huss
>>>>>_______________________________________________
>>>>>Insight-users mailing list
>>>>>Insight-users at itk.org
>>>>>http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>
>>>>
>>>
>>>
>>>------------------------------------------------------------------------
>>>
>>># This is the CMakeCache file.
>>># For build in directory: /home/hussain/ITK/InsightApp_binary
>>># You can edit this file to change values found and used by cmake.
>>># If you do not want to change any of the values, simply exit the editor.
>>># If you do want to change a value, simply edit, save, and exit the editor.
>>># The syntax for the file is as follows:
>>># KEY:TYPE=VALUE
>>># KEY is the name of a variable in the cache.
>>># TYPE is a hint to GUI's for the type of VALUE, DO NOT EDIT TYPE!.
>>># VALUE is the current value for the KEY.
>>>
>>>########################
>>># EXTERNAL cache entries
>>>########################
>>>
>>>//Value Computed by CMake
>>>AntiAliasBinaryImageFilter_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/AntiAliasBinaryImageFilter
>>>
>>>//Value Computed by CMake
>>>AntiAliasBinaryImageFilter_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/AntiAliasBinaryImageFilter
>>>
>>>//Value Computed by CMake
>>>AtlasSegmentation_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/IBSRValidation/AtlasSegmentation
>>>
>>>//Value Computed by CMake
>>>AtlasSegmentation_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/IBSRValidation/AtlasSegmentation
>>>
>>>//Build source documentation using doxygen
>>>BUILD_DOXYGEN:BOOL=OFF
>>>
>>>//Build the testing tree.
>>>BUILD_TESTING:BOOL=ON
>>>
>>>//Path to a program.
>>>CMAKE_AR:FILEPATH=/usr/bin/ar
>>>
>>>//For backwards compatibility, what version of CMake commands and
>>>// syntax should this version of CMake allow.
>>>CMAKE_BACKWARDS_COMPATIBILITY:STRING=2.0
>>>
>>>//Choose the type of build, options are: None(CMAKE_CXX_FLAGS or
>>>// CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel.
>>>//
>>>CMAKE_BUILD_TYPE:STRING=
>>>
>>>//C++ compiler
>>>CMAKE_CXX_COMPILER:STRING=c++
>>>
>>>//Flags used by the compiler during all build types.
>>>CMAKE_CXX_FLAGS:STRING=
>>>
>>>//Flags used by the compiler during debug builds.
>>>CMAKE_CXX_FLAGS_DEBUG:STRING=-g
>>>
>>>//Flags used by the compiler during release minsize builds.
>>>CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os
>>>
>>>//Flags used by the compiler during release builds (/MD /Ob1 /Oi
>>>// /Ot /Oy /Gs will produce slightly less optimized but smaller
>>>// files).
>>>CMAKE_CXX_FLAGS_RELEASE:STRING=-O3
>>>
>>>//Flags used by the compiler during Release with Debug Info builds.
>>>//
>>>CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g
>>>
>>>//C compiler
>>>CMAKE_C_COMPILER:STRING=gcc
>>>
>>>//Flags for C compiler.
>>>CMAKE_C_FLAGS:STRING=
>>>
>>>//Flags used by the compiler during debug builds.
>>>CMAKE_C_FLAGS_DEBUG:STRING=-g
>>>
>>>//Flags used by the compiler during release minsize builds.
>>>CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os
>>>
>>>//Flags used by the compiler during release builds (/MD /Ob1 /Oi
>>>// /Ot /Oy /Gs will produce slightly less optimized but smaller
>>>// files).
>>>CMAKE_C_FLAGS_RELEASE:STRING=-O3
>>>
>>>//Flags used by the compiler during Release with Debug Info builds.
>>>//
>>>CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-O2 -g
>>>
>>>//Flags used by the linker.
>>>CMAKE_EXE_LINKER_FLAGS:STRING=
>>>
>>>//Flags used by the linker during debug builds.
>>>CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=
>>>
>>>//Flags used by the linker during release minsize builds.
>>>CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=
>>>
>>>//Flags used by the linker during release builds.
>>>CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=
>>>
>>>//Flags used by the linker during Release with Debug Info builds.
>>>//
>>>CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>>>
>>>//Install path prefix, prepended onto install directories.
>>>CMAKE_INSTALL_PREFIX:PATH=/usr/local
>>>
>>>//Path to a program.
>>>CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make
>>>
>>>//Flags used by the linker during the creation of modules.
>>>CMAKE_MODULE_LINKER_FLAGS:STRING=
>>>
>>>//Flags used by the linker during debug builds.
>>>CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=
>>>
>>>//Flags used by the linker during release minsize builds.
>>>CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=
>>>
>>>//Flags used by the linker during release builds.
>>>CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=
>>>
>>>//Flags used by the linker during Release with Debug Info builds.
>>>//
>>>CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>>>
>>>//Path to a program.
>>>CMAKE_RANLIB:FILEPATH=/usr/bin/ranlib
>>>
>>>//Flags used by the linker during the creation of dll's.
>>>CMAKE_SHARED_LINKER_FLAGS:STRING=
>>>
>>>//Flags used by the linker during debug builds.
>>>CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=
>>>
>>>//Flags used by the linker during release minsize builds.
>>>CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=
>>>
>>>//Flags used by the linker during release builds.
>>>CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=
>>>
>>>//Flags used by the linker during Release with Debug Info builds.
>>>//
>>>CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>>>
>>>//If set, runtime paths are not added when using shared libraries.
>>>//
>>>CMAKE_SKIP_RPATH:BOOL=OFF
>>>
>>>//If true, cmake will use relative paths in makefiles and projects.
>>>//
>>>CMAKE_USE_RELATIVE_PATHS:BOOL=OFF
>>>
>>>//If this value is on, makefiles will be generated without the
>>>// .SILENT directive, and all commands will be echoed to the console
>>>// during the make.  This is useful for debugging only. With Visual
>>>// Studio IDE projects all commands are done without /nologo.
>>>CMAKE_VERBOSE_MAKEFILE:BOOL=OFF
>>>
>>>//Path to program used to compress files for transfer to the dart
>>>// server
>>>COMPRESSIONCOMMAND:FILEPATH=/usr/bin/gzip
>>>
>>>//Path to the coverage program that Dart client uses for performing
>>>// coverage inspection
>>>COVERAGE_COMMAND:FILEPATH=/usr/bin/gcov
>>>
>>>//Path to a program.
>>>CVSCOMMAND:FILEPATH=/usr/bin/cvs
>>>
>>>//Options passed to the cvs update command.
>>>CVS_UPDATE_OPTIONS:STRING=-d -A -P
>>>
>>>//Limit of reported errors, -1 reports all.
>>>DART_BUILD_ERROR_REPORT_LIMIT:BOOL=OFF
>>>
>>>//Limit of reported warnings, -1 reports all.
>>>DART_BUILD_WARNING_REPORT_LIMIT:BOOL=OFF
>>>
>>>//If you have Dart installed, where is it located?
>>>DART_ROOT:PATH=DART_ROOT-NOTFOUND
>>>
>>>//Time alloted for a test before Dart will kill the test.
>>>DART_TESTING_TIMEOUT:STRING=1500
>>>
>>>//Show the actual output of the build, or if off show a . for each
>>>// 1024 bytes.
>>>DART_VERBOSE_BUILD:BOOL=OFF
>>>
>>>//Should Dart server send email when build errors are found in
>>>// Continuous builds?
>>>DELIVER_CONTINUOUS_EMAIL:BOOL=OFF
>>>
>>>//Single output directory for building all executables.
>>>EXECUTABLE_OUTPUT_PATH:PATH=
>>>
>>>//Value Computed by CMake
>>>EllipsoidInteriorExteriorSpatialFunction_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/EllipsoidInteriorExteriorSpatialFunction
>>>
>>>//Value Computed by CMake
>>>EllipsoidInteriorExteriorSpatialFunction_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/EllipsoidInteriorExteriorSpatialFunction
>>>
>>>//Dependencies for the target
>>>Example_ITKFilterLib_LIB_DEPENDS:STATIC=ITKAlgorithms;ITKCommon;ITKBasicFilters;ITKNumerics;ITKCommon;ITKIO;ITKBasicFilters;ITKCommon;ITKNumerics;ITKIO;ITKBasicFilters;
>>>
>>>//Dependencies for the target
>>>Example_ITKRegistrationLib_LIB_DEPENDS:STATIC=ITKAlgorithms;ITKCommon;ITKBasicFilters;ITKNumerics;ITKIO;ITKBasicFilters;ITKCommon;
>>>
>>>//Value Computed by CMake
>>>FEMAtlasSegmentation_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/IBSRValidation/FEMAtlasSegmentation
>>>
>>>//Value Computed by CMake
>>>FEMAtlasSegmentation_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/IBSRValidation/FEMAtlasSegmentation
>>>
>>>//Value Computed by CMake
>>>FloodFilledSpatialFunction_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/FloodFilledSpatialFunction
>>>
>>>//Value Computed by CMake
>>>FloodFilledSpatialFunction_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/FloodFilledSpatialFunction
>>>
>>>//Path to gunzip executable
>>>GUNZIPCOMMAND:FILEPATH=/usr/bin/gunzip
>>>
>>>//Value Computed by CMake
>>>GaussianMinimumErrorClassifier_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/GaussianMinimumErrorClassifier
>>>
>>>//Value Computed by CMake
>>>GaussianMinimumErrorClassifier_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/GaussianMinimumErrorClassifier
>>>
>>>//Value Computed by CMake
>>>IBSRClassification_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/IBSRValidation/IBSRClassification
>>>
>>>//Value Computed by CMake
>>>IBSRClassification_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/IBSRValidation/IBSRClassification
>>>
>>>//Value Computed by CMake
>>>ITKRegistrationLib_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/ITKRegistrationLib
>>>
>>>//Value Computed by CMake
>>>ITKRegistrationLib_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/ITKRegistrationLib
>>>
>>>//The directory containing ITKConfig.cmake.  This is either the
>>>// root of the build tree, or PREFIX/lib/InsightToolkit for an
>>>// installation.
>>>ITK_DIR:PATH=C:/cygwin/home/hussain/ITK/Insight_binary
>>>
>>>//Value Computed by CMake
>>>InsightApplications_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary
>>>
>>>//Value Computed by CMake
>>>InsightApplications_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0
>>>
>>>//Path to java command, used by the Dart server to create html.
>>>//
>>>JAVACOMMAND:FILEPATH=/cygdrive/c/WINDOWS/system32/java
>>>
>>>//Single output directory for building all libraries.
>>>LIBRARY_OUTPUT_PATH:PATH=
>>>
>>>//Command used to build entire project from the command line.
>>>MAKECOMMAND:STRING=/usr/bin/make -i
>>>
>>>//Path to Rational purify command, used for memory error detection.
>>>//
>>>MEMORYCHECK_COMMAND:FILEPATH=MEMORYCHECK_COMMAND-NOTFOUND
>>>
>>>//File that contains suppressions for the memmory checker
>>>MEMORYCHECK_SUPPRESSIONS_FILE:FILEPATH=
>>>
>>>//Value Computed by CMake
>>>MIValidation_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/MIValidation
>>>
>>>//Value Computed by CMake
>>>MIValidation_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/MIValidation
>>>
>>>//Value Computed by CMake
>>>MultiResMIRegistration_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/MultiResMIRegistration
>>>
>>>//Value Computed by CMake
>>>MultiResMIRegistration_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/MultiResMIRegistration
>>>
>>>//What is the path where the file GL/gl.h can be found
>>>OPENGL_INCLUDE_DIR:PATH=/usr/include/w32api
>>>
>>>//Where can the opengl32 library be found
>>>OPENGL_gl_LIBRARY:FILEPATH=/usr/lib/w32api/libopengl32.a
>>>
>>>//Where can the glu32 library be found
>>>OPENGL_glu_LIBRARY:FILEPATH=/usr/lib/w32api/libglu32.a
>>>
>>>//Path to scp command, used by some Dart clients for submitting
>>>// results to a Dart server (when not using ftp for submissions)
>>>//
>>>SCPCOMMAND:FILEPATH=/usr/bin/scp
>>>
>>>//Name of the computer/site where compile is being run
>>>SITE:STRING=brattain
>>>
>>>//Value Computed by CMake
>>>StreamedWatershedSegmentation_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/StreamedWatershedSegmentation
>>>
>>>//Value Computed by CMake
>>>StreamedWatershedSegmentation_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/StreamedWatershedSegmentation
>>>
>>>//Value Computed by CMake
>>>SymmetricEllipsoidInteriorExteriorSpatialFunction_BINARY_DIR:STATIC=/home/hussain/ITK/InsightApp_binary/SymmetricEllipsoidInteriorExteriorSpatialFunction
>>>
>>>//Value Computed by CMake
>>>SymmetricEllipsoidInteriorExteriorSpatialFunction_SOURCE_DIR:STATIC=/home/hussain/ITK/InsightApplications-1.6.0/SymmetricEllipsoidInteriorExteriorSpatialFunction
>>>
>>>//Path to a program.
>>>TCL_TCLSH:FILEPATH=/usr/bin/tclsh
>>>
>>>//Use FLTK (The Fast Light Toolkit) for GUI (some applications
>>>// need this)
>>>USE_FLTK:BOOL=OFF
>>>
>>>//Use VTK (The Visualization Toolkit) (some applications need this)
>>>//
>>>USE_VTK:BOOL=OFF
>>>
>>>//Dependencies for the target
>>>param_LIB_DEPENDS:STATIC=ITKAlgorithms;ITKCommon;ITKBasicFilters;ITKCommon;
>>>
>>>
>>>########################
>>># INTERNAL cache entries
>>>########################
>>>
>>>//Advanced flag for variable: BUILD_DOXYGEN
>>>BUILD_DOXYGEN-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>BiasCorrector_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Path to an executable
>>>BiasFieldEstimator_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Path to an executable
>>>BiasImageGenerator_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Path to an executable
>>>BrainStripValidationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/IBSRValidation/AtlasSegmentation
>>>//Advanced flag for variable: CMAKE_AR
>>>CMAKE_AR-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_BUILD_TOOL
>>>CMAKE_BUILD_TOOL-ADVANCED:INTERNAL=1
>>>//What is the target build tool cmake is generating for.
>>>CMAKE_BUILD_TOOL:INTERNAL=/usr/bin/make
>>>//This is the directory where this CMakeCahe.txt was created
>>>CMAKE_CACHEFILE_DIR:INTERNAL=/home/hussain/ITK/InsightApp_binary
>>>//Major version of cmake used to create the current loaded cache
>>>//
>>>CMAKE_CACHE_MAJOR_VERSION:INTERNAL=2
>>>//Minor version of cmake used to create the current loaded cache
>>>//
>>>CMAKE_CACHE_MINOR_VERSION:INTERNAL=0
>>>//Major version of cmake used to create the current loaded cache
>>>//
>>>CMAKE_CACHE_RELEASE_VERSION:INTERNAL=patch 2
>>>//Path to CMake executable.
>>>CMAKE_COMMAND:INTERNAL=/usr/bin/cmake
>>>//Advanced flag for variable: CMAKE_CTEST_COMMAND
>>>CMAKE_CTEST_COMMAND-ADVANCED:INTERNAL=1
>>>//Path to ctest program executable.
>>>CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest
>>>//Advanced flag for variable: CMAKE_CXX_COMPILER
>>>CMAKE_CXX_COMPILER-ADVANCED:INTERNAL=1
>>>//full path to the compiler cmake found
>>>CMAKE_CXX_COMPILER_FULLPATH:INTERNAL=/usr/bin/c++
>>>//Result of TRY_COMPILE
>>>CMAKE_CXX_COMPILER_WORKS:INTERNAL=TRUE
>>>//Advanced flag for variable: CMAKE_CXX_FLAGS
>>>CMAKE_CXX_FLAGS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_CXX_FLAGS_DEBUG
>>>CMAKE_CXX_FLAGS_DEBUG-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_CXX_FLAGS_MINSIZEREL
>>>CMAKE_CXX_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_CXX_FLAGS_RELEASE
>>>CMAKE_CXX_FLAGS_RELEASE-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_CXX_FLAGS_RELWITHDEBINFO
>>>CMAKE_CXX_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_C_COMPILER
>>>CMAKE_C_COMPILER-ADVANCED:INTERNAL=1
>>>//full path to the compiler cmake found
>>>CMAKE_C_COMPILER_FULLPATH:INTERNAL=/usr/bin/gcc
>>>//Result of TRY_COMPILE
>>>CMAKE_C_COMPILER_WORKS:INTERNAL=TRUE
>>>//Advanced flag for variable: CMAKE_C_FLAGS
>>>CMAKE_C_FLAGS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_C_FLAGS_DEBUG
>>>CMAKE_C_FLAGS_DEBUG-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_C_FLAGS_MINSIZEREL
>>>CMAKE_C_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_C_FLAGS_RELEASE
>>>CMAKE_C_FLAGS_RELEASE-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_C_FLAGS_RELWITHDEBINFO
>>>CMAKE_C_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
>>>//Path to cache edit program executable.
>>>CMAKE_EDIT_COMMAND:INTERNAL=/usr/bin/ccmake
>>>//Advanced flag for variable: CMAKE_EXE_LINKER_FLAGS
>>>CMAKE_EXE_LINKER_FLAGS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_EXE_LINKER_FLAGS_DEBUG
>>>CMAKE_EXE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_EXE_LINKER_FLAGS_MINSIZEREL
>>>//
>>>CMAKE_EXE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_EXE_LINKER_FLAGS_RELEASE
>>>CMAKE_EXE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO
>>>//
>>>CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
>>>//Name of generator.
>>>CMAKE_GENERATOR:INTERNAL=Unix Makefiles
>>>//Start directory with the top level CMakeLists.txt file for this
>>>// project
>>>CMAKE_HOME_DIRECTORY:INTERNAL=/home/hussain/ITK/InsightApplications-1.6.0
>>>//Advanced flag for variable: CMAKE_MAKE_PROGRAM
>>>CMAKE_MAKE_PROGRAM-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_MODULE_LINKER_FLAGS
>>>CMAKE_MODULE_LINKER_FLAGS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_MODULE_LINKER_FLAGS_DEBUG
>>>CMAKE_MODULE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL
>>>//
>>>CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_MODULE_LINKER_FLAGS_RELEASE
>>>//
>>>CMAKE_MODULE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO
>>>//
>>>CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_RANLIB
>>>CMAKE_RANLIB-ADVANCED:INTERNAL=1
>>>//Path to CMake installation.
>>>CMAKE_ROOT:INTERNAL=/usr/share/cmake-2.0.2
>>>//Advanced flag for variable: CMAKE_SHARED_LINKER_FLAGS
>>>CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG
>>>CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL
>>>//
>>>CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE
>>>//
>>>CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO
>>>//
>>>CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_SKIP_RPATH
>>>CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1
>>>//uname command
>>>CMAKE_UNAME:INTERNAL=/usr/bin/uname
>>>//Advanced flag for variable: CMAKE_USE_RELATIVE_PATHS
>>>CMAKE_USE_RELATIVE_PATHS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CMAKE_VERBOSE_MAKEFILE
>>>CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: COMPRESSIONCOMMAND
>>>COMPRESSIONCOMMAND-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: COVERAGE_COMMAND
>>>COVERAGE_COMMAND-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CVSCOMMAND
>>>CVSCOMMAND-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: CVS_UPDATE_OPTIONS
>>>CVS_UPDATE_OPTIONS-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: DART_BUILD_ERROR_REPORT_LIMIT
>>>DART_BUILD_ERROR_REPORT_LIMIT-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: DART_BUILD_WARNING_REPORT_LIMIT
>>>DART_BUILD_WARNING_REPORT_LIMIT-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: DART_TESTING_TIMEOUT
>>>DART_TESTING_TIMEOUT-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: DART_VERBOSE_BUILD
>>>DART_VERBOSE_BUILD-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: DELIVER_CONTINUOUS_EMAIL
>>>DELIVER_CONTINUOUS_EMAIL-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>DICOMApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/DICOMApp
>>>//Path to an executable
>>>EnergyTablePlotter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Path to an executable
>>>Example_ITKFilterLibTest_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/ITKFilterLib
>>>//Path to a library
>>>Example_ITKFilterLib_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/ITKFilterLib
>>>//Whether a library is static, shared or module.
>>>Example_ITKFilterLib_LIBRARY_TYPE:INTERNAL=STATIC
>>>//Path to an executable
>>>Example_ITKRegistrationLibTest_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/ITKRegistrationLib
>>>//Path to a library
>>>Example_ITKRegistrationLib_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/ITKRegistrationLib
>>>//Whether a library is static, shared or module.
>>>Example_ITKRegistrationLib_LIBRARY_TYPE:INTERNAL=STATIC
>>>//Path to an executable
>>>FEMBrainStripValidationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/IBSRValidation/FEMAtlasSegmentation
>>>//Path to an executable
>>>FEMImageRegLMEx_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/FEM
>>>//Path to an executable
>>>FEMRead_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/FEM
>>>//Path to an executable
>>>FEMSolverHyperbolicExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/FEM
>>>//Path to an executable
>>>FEMTruss_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/FEM
>>>//Path to an executable
>>>FuzzyConnectedness_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/FuzzyConnectedness
>>>//Advanced flag for variable: GUNZIPCOMMAND
>>>GUNZIPCOMMAND-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>GaussianIBSRClassificationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/IBSRValidation/IBSRClassification
>>>//Path to an executable
>>>GaussianMSClassificationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MultichannelTissueClassificationValidation
>>>//Path to an executable
>>>GaussianMinimumErrorClassifier_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/GaussianMinimumErrorClassifier
>>>//Path to an executable
>>>ImageCorrector_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Path to an executable
>>>IntensityHistogram3D_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Path to an executable
>>>InterSliceIntensityCorrector_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Advanced flag for variable: JAVACOMMAND
>>>JAVACOMMAND-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>KmeansIBSRClassificationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/IBSRValidation/IBSRClassification
>>>//Path to an executable
>>>KmeansMSClassificationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MultichannelTissueClassificationValidation
>>>//Advanced flag for variable: MAKECOMMAND
>>>MAKECOMMAND-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: MEMORYCHECK_COMMAND
>>>MEMORYCHECK_COMMAND-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: MEMORYCHECK_SUPPRESSIONS_FILE
>>>MEMORYCHECK_SUPPRESSIONS_FILE-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>MIValidationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MIValidation
>>>//Path to an executable
>>>MRFGaussianIBSRClassificationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/IBSRValidation/IBSRClassification
>>>//Path to an executable
>>>MRFKmeansIBSRClassificationApp_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/IBSRValidation/IBSRClassification
>>>//Path to an executable
>>>MetaImageImporter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MetaImageImporter
>>>//Path to an executable
>>>MetaImageReadWrite_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MetaImageReadWrite
>>>//Path to an executable
>>>MultiResMIRegistration_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MultiResMIRegistration
>>>//Advanced flag for variable: OPENGL_INCLUDE_DIR
>>>OPENGL_INCLUDE_DIR-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: OPENGL_gl_LIBRARY
>>>OPENGL_gl_LIBRARY-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: OPENGL_glu_LIBRARY
>>>OPENGL_glu_LIBRARY-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: SCPCOMMAND
>>>SCPCOMMAND-ADVANCED:INTERNAL=1
>>>//Advanced flag for variable: SITE
>>>SITE-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>SlabIdentifier_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/MRIBiasCorrection
>>>//Advanced flag for variable: TCL_TCLSH
>>>TCL_TCLSH-ADVANCED:INTERNAL=1
>>>//Path to an executable
>>>itk2DAnisotropicDiffusionImageFilter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/AnisotropicDiffusionImageFilter
>>>//Path to an executable
>>>itk2DCannySegmentationLevelSetImageFilter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/LevelSetSegmentation
>>>//Path to an executable
>>>itk2DSimpleLevelSetsExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/SimpleLevelSetsExample
>>>//Path to an executable
>>>itk2DThresholdSegmentationLevelSetImageFilter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/LevelSetSegmentation
>>>//Path to an executable
>>>itk3DAnisotropicFourthOrderLevelSetImageFilter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/LevelSetSurfaceProcessing
>>>//Path to an executable
>>>itk3DIsotropicFourthOrderLevelSetImageFilter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/LevelSetSurfaceProcessing
>>>//Path to an executable
>>>itk3DSimpleLevelSetsExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/SimpleLevelSetsExample
>>>//Path to an executable
>>>itk3DUnsharpMaskLevelSetImageFilter_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/LevelSetSurfaceProcessing
>>>//Path to an executable
>>>itkAntiAliasBinaryImageFilterExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/AntiAliasBinaryImageFilter
>>>//Path to an executable
>>>itkEllipsoidInteriorExteriorSpatialFunctionExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/EllipsoidInteriorExteriorSpatialFunction
>>>//Path to an executable
>>>itkFloodFilledSpatialFunctionExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/FloodFilledSpatialFunction
>>>//Path to an executable
>>>itkSampleDataGenerator_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/AntiAliasBinaryImageFilter
>>>//Path to an executable
>>>itkSymmetricEllipsoidInteriorExteriorSpatialFunctionExample_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/SymmetricEllipsoidInteriorExteriorSpatialFunction
>>>//Path to a library
>>>param_CMAKE_PATH:INTERNAL=/home/hussain/ITK/InsightApp_binary/StreamedWatershedSegmentation/ParameterFileParser
>>>//Whether a library is static, shared or module.
>>>param_LIBRARY_TYPE:INTERNAL=STATIC
>>>
>>
>>
>>
>>_______________________________________________
>>Insight-users mailing list
>>Insight-users at itk.org
>>http://www.itk.org/mailman/listinfo/insight-users
>>
> 
> 
> 