[Insight-users] still have problems with Applications

Mon, 12 Jan 2004 13:39:29 +0200

Hi,

I still have problems with the Application's compilation. I updated the
Toolkit with cvs update -d -P -A but nothing seems to be updated...this is
what I get:

[marc at ithaki InsightToolkit-1.4.0]$ cvs update -d -P -A
? Applications
? Auxiliary
? CMakeLists.txt
? Code
? Copyright
? Copyright.txt
? DartConfig.cmake
? Documentation
? Examples
? GettingStarted.txt
? ITKConfig.cmake.in
? InsightLogo.gif
? Makefile.in
? README.html
? Testing
? UseITK.cmake.in
? Utilities
? Validation
? Wrapping
? install-sh
? itkConfigure.h.in
? itkGenerateITKConfig.cmake
? itkIncludeDirectories.cmake
cvs server: Updating .
cvs server: Updating CVSROOT
cvs server: Updating Cable
cvs server: Updating Cable/CableTclFacility
cvs server: Updating Cable/CxxTypes
cvs server: Updating Cable/CxxTypes/Shared
cvs server: Updating Cable/CxxTypes/Static
cvs server: Updating Cable/Executables
cvs server: Updating Cable/Expat
cvs server: Updating Cable/Expat/xmlparse
cvs server: Updating Cable/Expat/xmltok
cvs server: Updating Cable/Expat/xmlwf
cvs server: Updating Cable/Generators
cvs server: Updating Cable/Parsers
cvs server: Updating Cable/Test
cvs server: Updating Cable/WrapTclFacility
cvs server: Updating Cable-old
cvs server: Updating Cable-old/CxxTypes
cvs server: Updating Cable-old/CxxTypes/Shared
cvs server: Updating Cable-old/CxxTypes/Static
cvs server: Updating Cable-old/Executables
cvs server: Updating Cable-old/Expat
cvs server: Updating Cable-old/Expat/xmlparse
cvs server: Updating Cable-old/Expat/xmltok
cvs server: Updating Cable-old/Expat/xmlwf
cvs server: Updating Cable-old/Generators
cvs server: Updating Cable-old/Parsers
cvs server: Updating Cable-old/Test
cvs server: Updating Cable-old/WrapTclFacility
cvs server: Updating CableWeb
cvs server: Updating CableWeb/Art
cvs server: Updating CableWeb/Examples
cvs server: Updating CableWeb/Examples/ShapesTcl
cvs server: Updating CableWeb/Examples/StringTcl
cvs server: Updating CableWeb/HTML
cvs server: Updating CableWeb-old
cvs server: Updating CableWeb-old/Art
cvs server: Updating CableWeb-old/Examples
cvs server: Updating CableWeb-old/Examples/ShapesTcl
cvs server: Updating CableWeb-old/Examples/StringTcl
cvs server: Updating CableWeb-old/HTML
cvs server: Updating Docs
cvs server: failed to create lock directory for `/cvsroot/Insight/Docs'
(/usr/local/cvslocks/Docs/#cvs.lock): Permission denied
cvs server: failed to obtain dir lock in repository `/cvsroot/Insight/Docs'
cvs [server aborted]: read lock failed - giving up

and then when trying to compile the applications the message I get is:

Building object file GaussianClassifierValidationApp.o...
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:
In member function `void
itk::ClassifierValidationInputParser<TVectorInputImage, TMaskImage>::Execute()
[with TVectorInputImage = main(int, char**)::VectorInputImageType, TMaskImage
= main(int, char**)::BrainMaskImageType]':
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:53:
  instantiated from `void itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::Execute() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:166:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:358:
no matching function for call to `vnl_matrix<double>::set_size(long unsigned
int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:53:
  instantiated from `void itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::Execute() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:166:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:367:
no matching function for call to `vnl_matrix<double>::set_size(long unsigned
int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:53:
  instantiated from `void itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::Execute() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:166:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:375:
no matching function for call to `vnl_matrix<unsigned int>::set_size(long
unsigned int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:
In constructor `itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage>::ClassifierValidationInputParser() [with TVectorInputImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]':
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.h:78:
  instantiated from `static
itk::SmartPointer<itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage> > itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage>::New() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:31:
  instantiated from `itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::ClassifierApplicationBase() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.txx:28:
  instantiated from `itk::GaussianClassifierValidationApp<TImage,
TMaskImage>::GaussianClassifierValidationApp() [with TImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.h:88:
  instantiated from `static
itk::SmartPointer<itk::GaussianClassifierValidationApp<TImage, TMaskImage> >
itk::GaussianClassifierValidationApp<TImage, TMaskImage>::New() [with TImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:49:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:57:
no matching function for call to `vnl_matrix<double>::set_size(long unsigned
int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.h:78:
  instantiated from `static
itk::SmartPointer<itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage> > itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage>::New() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:31:
  instantiated from `itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::ClassifierApplicationBase() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.txx:28:
  instantiated from `itk::GaussianClassifierValidationApp<TImage,
TMaskImage>::GaussianClassifierValidationApp() [with TImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.h:88:
  instantiated from `static
itk::SmartPointer<itk::GaussianClassifierValidationApp<TImage, TMaskImage> >
itk::GaussianClassifierValidationApp<TImage, TMaskImage>::New() [with TImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:49:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:64:
no matching function for call to `vnl_matrix<double>::set_size(long unsigned
int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.h:78:
  instantiated from `static
itk::SmartPointer<itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage> > itk::ClassifierValidationInputParser<TVectorInputImage,
TMaskImage>::New() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:31:
  instantiated from `itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::ClassifierApplicationBase() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.txx:28:
  instantiated from `itk::GaussianClassifierValidationApp<TImage,
TMaskImage>::GaussianClassifierValidationApp() [with TImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.h:88:
  instantiated from `static
itk::SmartPointer<itk::GaussianClassifierValidationApp<TImage, TMaskImage> >
itk::GaussianClassifierValidationApp<TImage, TMaskImage>::New() [with TImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:49:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierValidationInputParser.txx:68:
no matching function for call to `vnl_matrix<unsigned int>::set_size(long
unsigned int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.txx:
In constructor `itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage>::GaussianImageClassifierApp() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]':
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.h:80:
  instantiated from `static
itk::SmartPointer<itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage> > itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage>::New() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:32:
  instantiated from `itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::ClassifierApplicationBase() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.txx:28:
  instantiated from `itk::GaussianClassifierValidationApp<TImage,
TMaskImage>::GaussianClassifierValidationApp() [with TImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.h:88:
  instantiated from `static
itk::SmartPointer<itk::GaussianClassifierValidationApp<TImage, TMaskImage> >
itk::GaussianClassifierValidationApp<TImage, TMaskImage>::New() [with TImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:49:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.txx:39:
no matching function for call to `vnl_matrix<double>::set_size(long unsigned
int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.h:80:
  instantiated from `static
itk::SmartPointer<itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage> > itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage>::New() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:32:
  instantiated from `itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::ClassifierApplicationBase() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.txx:28:
  instantiated from `itk::GaussianClassifierValidationApp<TImage,
TMaskImage>::GaussianClassifierValidationApp() [with TImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.h:88:
  instantiated from `static
itk::SmartPointer<itk::GaussianClassifierValidationApp<TImage, TMaskImage> >
itk::GaussianClassifierValidationApp<TImage, TMaskImage>::New() [with TImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:49:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.txx:46:
no matching function for call to `vnl_matrix<double>::set_size(long unsigned
int&, long unsigned int&)'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.h:80:
  instantiated from `static
itk::SmartPointer<itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage> > itk::GaussianImageClassifierApp<TVectorInputImage,
TMaskImage>::New() [with TVectorInputImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/ClassifierApplicationBase.txx:32:
  instantiated from `itk::ClassifierApplicationBase<TParser, TClassifier,
TOutputGenerator>::ClassifierApplicationBase() [with TParser =
itk::ClassifierValidationInputParser<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TClassifier =
itk::GaussianImageClassifierApp<main(int, char**)::VectorInputImageType,
main(int, char**)::BrainMaskImageType>, TOutputGenerator =
itk::ClassifierValidationOutput<main(int, char**)::BrainMaskImageType>]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.txx:28:
  instantiated from `itk::GaussianClassifierValidationApp<TImage,
TMaskImage>::GaussianClassifierValidationApp() [with TImage = main(int,
char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.h:88:
  instantiated from `static
itk::SmartPointer<itk::GaussianClassifierValidationApp<TImage, TMaskImage> >
itk::GaussianClassifierValidationApp<TImage, TMaskImage>::New() [with TImage =
main(int, char**)::VectorInputImageType, TMaskImage = main(int,
char**)::BrainMaskImageType]'
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:49:
  instantiated from here
/home/marc/InsightApplications/IBSRValidation/IBSRClassification/Code/GaussianImageClassifierApp.txx:50:
no matching function for call to `vnl_matrix<unsigned int>::set_size(long
unsigned int&, long unsigned int&)'
make[5]: *** [GaussianClassifierValidationApp.o] Error 1
make[4]: *** [default_target] Error 2
make[3]: *** [default_target_IBSRClassification] Error 2
make[2]: *** [default_target] Error 2
make[1]: *** [default_target_IBSRValidation] Error 2
make: *** [default_target] Error 2

thanks again,

Marc 