[Insight-developers] SimpleITK compilation error

Fri Sep 30 11:00:17 EDT 2011

Hi Arnaud,

Hmm. Looks like there is an issue wrapping enums for C# on debian. We
are using a special "enum as type" option in SWIG, which may be
contributing to the issue ("enum as integer" did not work for other
Linux flavours). I'm travelling for the next 2 weeks, so it may take a
while before I can set up a virtual machine to investigate...

Cheers, Dan

On 30 September 2011 15:45, Arnaud Gelas <arnaud_gelas at hms.harvard.edu> wrote:
> Here is what I get on next:
>
> [ 39%] Compiling C# library SimpleITKCSharpManaged
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/AffineTransform.cs(47,26):
> error CS0115: `itk.simple.AffineTransform.GetTransform(int)' is marked as an
> override but no suitable method found to override
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/AffineTransform.cs(53,32):
> error CS0115: `itk.simple.AffineTransform.GetOptimizerScales(int)' is marked
> as an override but no suitable method found to override
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/MattesMutualInformationMetric.cs(47,26):
> error CS0115:
> `itk.simple.MattesMutualInformationMetric.GetMetric(itk.simple.Image)' is
> marked as an override but no suitable method found to override
> Compilation failed: 3 error(s), 0 warnings
>
> ---
>
> Let me know if there's anything you want me to try here
>
> Best,
> Arnaud
>
> On 09/30/2011 09:32 AM, Arnaud Gelas wrote:
>
> My machine is a debian squeeze (64 bits)
> Mono (version): 2.6.7-5
> gcc: 4.6.1
>
> It was working fine yesterday (after removing the dependency to curses)...
>
> ---
>
> I am giving a try on next, to check if it has not been fixed there...
>
> On 09/30/2011 09:25 AM, Bradley Lowekamp wrote:
>
> Hello Arnaud,
> This error looks only related to CSharp. Dan Mueller is the CSharp expert,
> hopefully he as some insight.
> What version of OS, and mono are you using?
> Thanks for let up know what's not working for you,
> Brad
> On Sep 30, 2011, at 9:17 AM, Arnaud Gelas wrote:
>
> Hi Brad,
>
> I am recompiling SimpleITK (master) this morning and I get compilation
> errors (see errors below).
>
> BTW, is there a mailing list for SimpleITK where I could post such a
> message?
>
> Thanks,
> Arnaud
>
> Linking CXX shared module ../../lib/_SimpleITK.so
> Creating Python virtualenv
> Already using interpreter /usr/bin/python2.6
> New python executable in
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/bin/python2.6
> Also creating executable in
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/bin/python
> [ 56%] Built target SimpleITKUnitTestDriver
> Installing
> distribute....................................................................................................................................................................................done.
> Installing
> pip.../home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(12,122):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `sitkUnknow_get'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(12,139):
> error CS1502: The best overloaded method match for
> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(12,139):
> error CS1503: Argument `#2' cannot convert `object' expression to type
> `itk.simple.InterpolateFunctionEnum'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(13,140):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `sitkNearestNeighbor_get'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(13,166):
> error CS1502: The best overloaded method match for
> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(13,166):
> error CS1503: Argument `#2' cannot convert `object' expression to type
> `itk.simple.InterpolateFunctionEnum'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(14,144):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `sitkLinearInterpolate_get'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(14,172):
> error CS1502: The best overloaded method match for
> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(14,172):
> error CS1503: Argument `#2' cannot convert `object' expression to type
> `itk.simple.InterpolateFunctionEnum'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(15,134):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `sitkWindowedSinc_get'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(15,157):
> error CS1502: The best overloaded method match for
> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(15,157):
> error CS1503: Argument `#2' cannot convert `object' expression to type
> `itk.simple.InterpolateFunctionEnum'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,86):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `ResampleImageFilter_SWIGUpcast'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,64):
> error CS1502: The best overloaded method match for
> `itk.simple.ImageFilter.ImageFilter(System.IntPtr, bool)' has some
> invalid arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ImageFilter.cs(18,12):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,64):
> error CS1503: Argument `#1' cannot convert `object' expression to type
> `System.IntPtr'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(43,56):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `new_ResampleImageFilter'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(43,34):
> error CS1502: The best overloaded method match for
> `itk.simple.ResampleImageFilter.ResampleImageFilter(System.IntPtr,
> bool)' has some invalid arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,12):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(43,34):
> error CS1503: Argument `#1' cannot convert `object' expression to type
> `System.IntPtr'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(44,47):
> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
> definition for `new_SOptimizer'
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(44,25):
> error CS1502: The best overloaded method match for
> `itk.simple.SOptimizer.SOptimizer(System.IntPtr, bool)' has some invalid
> arguments
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(18,12):
> (Location of the symbol related to previous error)
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(44,25):
> error CS1503: Argument `#1' cannot convert `object' expression to type
> `System.IntPtr'
> Compilation failed: 21 error(s), 0 warnings
> make[5]: *** [Wrapping/SimpleITKCSharpManaged.dll] Error 1
> make[4]: *** [Wrapping/CMakeFiles/SimpleITKCSharpManaged.dir/all] Error 2
> make[4]: *** Waiting for unfinished jobs....
> ..................done.
> Installing python module to the virtualenv
> running install
> running bdist_egg
> running egg_info
> writing SimpleITK.egg-info/PKG-INFO
> writing top-level names to SimpleITK.egg-info/top_level.txt
> writing dependency_links to SimpleITK.egg-info/dependency_links.txt
> warning: manifest_maker: standard file 'setup.py' not found
> reading manifest file 'SimpleITK.egg-info/SOURCES.txt'
> writing manifest file 'SimpleITK.egg-info/SOURCES.txt'
> installing library code to build/bdist.linux-x86_64/egg
> running install_lib
> running build_py
> creating build/bdist.linux-x86_64/egg
> copying build/lib.linux-x86_64-2.6/SimpleITK.py ->
> build/bdist.linux-x86_64/egg
> byte-compiling build/bdist.linux-x86_64/egg/SimpleITK.py to SimpleITK.pyc
> [ 56%] Built target org_itk_simple_jar
> installing package data to build/bdist.linux-x86_64/egg
> running install_data
> copying /home/ajg23/GITROOT/SimpleITK/build/lib/_SimpleITK.so ->
> build/bdist.linux-x86_64/egg/
> creating build/bdist.linux-x86_64/egg/EGG-INFO
> copying SimpleITK.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying SimpleITK.egg-info/SOURCES.txt ->
> build/bdist.linux-x86_64/egg/EGG-INFO
> copying SimpleITK.egg-info/dependency_links.txt ->
> build/bdist.linux-x86_64/egg/EGG-INFO
> copying SimpleITK.egg-info/not-zip-safe ->
> build/bdist.linux-x86_64/egg/EGG-INFO
> copying SimpleITK.egg-info/top_level.txt ->
> build/bdist.linux-x86_64/egg/EGG-INFO
> creating 'dist/SimpleITK-0.3.0-py2.6.egg' and adding
> 'build/bdist.linux-x86_64/egg' to it
> removing 'build/bdist.linux-x86_64/egg' (and everything under it)
> Processing SimpleITK-0.3.0-py2.6.egg
> creating
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/lib/python2.6/site-packages/SimpleITK-0.3.0-py2.6.egg
> Extracting SimpleITK-0.3.0-py2.6.egg to
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/lib/python2.6/site-packages
> Adding SimpleITK 0.3.0 to easy-install.pth file
>
> Installed
> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/lib/python2.6/site-packages/SimpleITK-0.3.0-py2.6.egg
> Processing dependencies for SimpleITK==0.3.0
> Finished processing dependencies for SimpleITK==0.3.0
> [ 57%] Built target _SimpleITK
> make[3]: *** [all] Error 2
> make[2]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build] Error 2
> make[1]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
> make: *** [all] Error 2
>
>
> ========================================================
>
> Bradley Lowekamp
>
> Medical Science and Computing for
>
> Office of High Performance Computing and Communications
>
> National Library of Medicine
>
> blowekamp at mail.nih.gov
>
>
>
>
>
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