[Insight-developers] SimpleITK compilation error

Fri Sep 30 09:45:05 EDT 2011

Here is what I get on next:

[ 39%] Compiling C# library SimpleITKCSharpManaged
/home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/AffineTransform.cs(47,26): 
error CS0115: `itk.simple.AffineTransform.GetTransform(int)' is marked 
as an override but no suitable method found to override
/home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/AffineTransform.cs(53,32): 
error CS0115: `itk.simple.AffineTransform.GetOptimizerScales(int)' is 
marked as an override but no suitable method found to override
/home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/MattesMutualInformationMetric.cs(47,26): 
error CS0115: 
`itk.simple.MattesMutualInformationMetric.GetMetric(itk.simple.Image)' 
is marked as an override but no suitable method found to override
Compilation failed: 3 error(s), 0 warnings

---

Let me know if there's anything you want me to try here

Best,
Arnaud

On 09/30/2011 09:32 AM, Arnaud Gelas wrote:
> My machine is a debian squeeze (64 bits)
> Mono (version): 2.6.7-5
> gcc: 4.6.1
>
> It was working fine yesterday (after removing the dependency to curses)...
>
> ---
>
> I am giving a try on next, to check if it has not been fixed there...
>
> On 09/30/2011 09:25 AM, Bradley Lowekamp wrote:
>> Hello Arnaud,
>>
>> This error looks only related to CSharp. Dan Mueller is the CSharp 
>> expert, hopefully he as some insight.
>>
>> What version of OS, and mono are you using?
>>
>> Thanks for let up know what's not working for you,
>> Brad
>>
>> On Sep 30, 2011, at 9:17 AM, Arnaud Gelas wrote:
>>
>>> Hi Brad,
>>>
>>> I am recompiling SimpleITK (master) this morning and I get compilation
>>> errors (see errors below).
>>>
>>> BTW, is there a mailing list for SimpleITK where I could post such a
>>> message?
>>>
>>> Thanks,
>>> Arnaud
>>>
>>> Linking CXX shared module ../../lib/_SimpleITK.so
>>> Creating Python virtualenv
>>> Already using interpreter /usr/bin/python2.6
>>> New python executable in
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/bin/python2.6
>>> Also creating executable in
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/bin/python
>>> [ 56%] Built target SimpleITKUnitTestDriver
>>> Installing
>>> distribute....................................................................................................................................................................................done.
>>> Installing
>>> pip.../home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(12,122): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `sitkUnknow_get'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(12,139): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
>>> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(12,139): 
>>>
>>> error CS1503: Argument `#2' cannot convert `object' expression to type
>>> `itk.simple.InterpolateFunctionEnum'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(13,140): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `sitkNearestNeighbor_get'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(13,166): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
>>> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(13,166): 
>>>
>>> error CS1503: Argument `#2' cannot convert `object' expression to type
>>> `itk.simple.InterpolateFunctionEnum'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(14,144): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `sitkLinearInterpolate_get'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(14,172): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
>>> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(14,172): 
>>>
>>> error CS1503: Argument `#2' cannot convert `object' expression to type
>>> `itk.simple.InterpolateFunctionEnum'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(15,134): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `sitkWindowedSinc_get'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(15,157): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.InterpolateFunctionEnum.InterpolateFunctionEnum(string,
>>> itk.simple.InterpolateFunctionEnum)' has some invalid arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(43,11): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/InterpolateFunctionEnum.cs(15,157): 
>>>
>>> error CS1503: Argument `#2' cannot convert `object' expression to type
>>> `itk.simple.InterpolateFunctionEnum'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,86): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `ResampleImageFilter_SWIGUpcast'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,64): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.ImageFilter.ImageFilter(System.IntPtr, bool)' has some
>>> invalid arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ImageFilter.cs(18,12): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,64): 
>>>
>>> error CS1503: Argument `#1' cannot convert `object' expression to type
>>> `System.IntPtr'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(43,56): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `new_ResampleImageFilter'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(43,34): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.ResampleImageFilter.ResampleImageFilter(System.IntPtr,
>>> bool)' has some invalid arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(17,12): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/ResampleImageFilter.cs(43,34): 
>>>
>>> error CS1503: Argument `#1' cannot convert `object' expression to type
>>> `System.IntPtr'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(44,47): 
>>>
>>> error CS0117: `itk.simple.SimpleITKPINVOKE' does not contain a
>>> definition for `new_SOptimizer'
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SimpleITKPINVOKE.cs(14,7): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(44,25): 
>>>
>>> error CS1502: The best overloaded method match for
>>> `itk.simple.SOptimizer.SOptimizer(System.IntPtr, bool)' has some 
>>> invalid
>>> arguments
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(18,12): 
>>>
>>> (Location of the symbol related to previous error)
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Wrapping/CSharpSources/SOptimizer.cs(44,25): 
>>>
>>> error CS1503: Argument `#1' cannot convert `object' expression to type
>>> `System.IntPtr'
>>> Compilation failed: 21 error(s), 0 warnings
>>> make[5]: *** [Wrapping/SimpleITKCSharpManaged.dll] Error 1
>>> make[4]: *** [Wrapping/CMakeFiles/SimpleITKCSharpManaged.dir/all] 
>>> Error 2
>>> make[4]: *** Waiting for unfinished jobs....
>>> ..................done.
>>> Installing python module to the virtualenv
>>> running install
>>> running bdist_egg
>>> running egg_info
>>> writing SimpleITK.egg-info/PKG-INFO
>>> writing top-level names to SimpleITK.egg-info/top_level.txt
>>> writing dependency_links to SimpleITK.egg-info/dependency_links.txt
>>> warning: manifest_maker: standard file 'setup.py' not found
>>> reading manifest file 'SimpleITK.egg-info/SOURCES.txt'
>>> writing manifest file 'SimpleITK.egg-info/SOURCES.txt'
>>> installing library code to build/bdist.linux-x86_64/egg
>>> running install_lib
>>> running build_py
>>> creating build/bdist.linux-x86_64/egg
>>> copying build/lib.linux-x86_64-2.6/SimpleITK.py ->
>>> build/bdist.linux-x86_64/egg
>>> byte-compiling build/bdist.linux-x86_64/egg/SimpleITK.py to 
>>> SimpleITK.pyc
>>> [ 56%] Built target org_itk_simple_jar
>>> installing package data to build/bdist.linux-x86_64/egg
>>> running install_data
>>> copying /home/ajg23/GITROOT/SimpleITK/build/lib/_SimpleITK.so ->
>>> build/bdist.linux-x86_64/egg/
>>> creating build/bdist.linux-x86_64/egg/EGG-INFO
>>> copying SimpleITK.egg-info/PKG-INFO -> 
>>> build/bdist.linux-x86_64/egg/EGG-INFO
>>> copying SimpleITK.egg-info/SOURCES.txt ->
>>> build/bdist.linux-x86_64/egg/EGG-INFO
>>> copying SimpleITK.egg-info/dependency_links.txt ->
>>> build/bdist.linux-x86_64/egg/EGG-INFO
>>> copying SimpleITK.egg-info/not-zip-safe ->
>>> build/bdist.linux-x86_64/egg/EGG-INFO
>>> copying SimpleITK.egg-info/top_level.txt ->
>>> build/bdist.linux-x86_64/egg/EGG-INFO
>>> creating 'dist/SimpleITK-0.3.0-py2.6.egg' and adding
>>> 'build/bdist.linux-x86_64/egg' to it
>>> removing 'build/bdist.linux-x86_64/egg' (and everything under it)
>>> Processing SimpleITK-0.3.0-py2.6.egg
>>> creating
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/lib/python2.6/site-packages/SimpleITK-0.3.0-py2.6.egg
>>> Extracting SimpleITK-0.3.0-py2.6.egg to
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/lib/python2.6/site-packages
>>> Adding SimpleITK 0.3.0 to easy-install.pth file
>>>
>>> Installed
>>> /home/ajg23/GITROOT/SimpleITK/build/SimpleITK-build/Testing/Installation/PythonVirtualenv/lib/python2.6/site-packages/SimpleITK-0.3.0-py2.6.egg
>>> Processing dependencies for SimpleITK==0.3.0
>>> Finished processing dependencies for SimpleITK==0.3.0
>>> [ 57%] Built target _SimpleITK
>>> make[3]: *** [all] Error 2
>>> make[2]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build] 
>>> Error 2
>>> make[1]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>
>> ========================================================
>>
>> Bradley Lowekamp
>>
>> Medical Science and Computing for
>>
>> Office of High Performance Computing and Communications
>>
>> National Library of Medicine
>>
>> blowekamp at mail.nih.gov <mailto:blowekamp at mail.nih.gov>
>>
>>
>>
>>
>

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