[Insight-developers] Moving Insight Journal Paper 176

[Wes Turner]

Thanks.  I'll get back to it once the freeze is over. :-)

- Wes

2009/5/16 Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr>:
>
> Hi Wes,
>
> I would continue with BinaryImageToLabelMapFilter and
> LabelMapToBinaryImageFilter, the filters for conversion from/to binary
> images. The API is quite simple, but the code is more complex in
> BinaryImageToLabelMapFilter than in the othe similar filters, because it has
> find the connected components.
>
> Also, I've just fixed a bug in BinaryImageToLabelMapFilter when the number
> of threads is greater then the size on one of the image dimesion, so you
> should get the last version from the website.
>
> Then I would go with the simple filters for label manipulation:
>
> AggregateLabelMapFilter
> ChangeLabelLabelMapFilter
> MergeLabelMapFilter
> PackLabelMapFilter
> ShiftScaleLabelMapFilter
>
> And the one to manipulate the region:
>
> AutoCropLabelMapFilter
> ChangeRegionLabelMapFilter
> CropLabelMapFilter
> PadLabelMapFilter
> RegionFromReferenceLabelMapFilter
>
> Thanks for the nice work you're doing!
>
> Gaëtan
>
>
>
> Le 14 mai 09 à 21:38, Wes Turner a écrit :
>
>> Gaetan,
>>
>> I have all the classes included in your previous email:
>>
>>
>>  itk::LabelObjectLine
>>  itk::LabelObject
>>  itk::LabelMap
>>  itk::LabelImageToLabelMapImageFilter
>>  itk::LabelMapToLabelImageFilter
>>
>> as well as itk::LabelMapFilter (needed for
>> itk::LabelMapToLabelImageFilter) and itk::Functor::LabelObjectLineComparator
>> (derived by stripping out the functor from itk::LabelObjectLine).
>>
>> I'm not sure how much more time I will have before the code freeze, but if
>> you have any more high priority suggestions, I would be happy to hear them.
>>
>> - Wes
>>
>>
>> On Thu, May 14, 2009 at 11:15 AM, Wes Turner <wes.turner at kitware.com>
>> wrote:
>> Thanks, Gaetan, there is a lot of code in that submission and you will
>> notice it going into the repository ... slowly ...  haven't taken a close
>> look at your patches yet, but thanks for sending them on.
>>
>> - Wes
>>
>>
>> On Tue, May 12, 2009 at 3:25 PM, Gaëtan Lehmann
>> <gaetan.lehmann at jouy.inra.fr> wrote:
>>
>> Le 12 mai 09 à 15:08, Gaëtan Lehmann a écrit :
>>
>>
>> Two quick issues.
>>
>>     • If we try to configure the system with CMAKE_BUILD_TYPE set to
>> Release, the compiler crashes (error message is below).  System is Ubuntu,
>> gcc-4.2.4 oor 4.3.2.
>>
>> I had this kind of problem on mandriva 2009.0 rc1 last year. A compiler
>> upgrade fixed the problem.
>> Now that I see that code, it recall me that et should be moved to an
>> helper function, because, IIRC, msvc 6 doesn't like too much the templated
>> method. This small change may help with your compiler issue as well :-)
>>
>> It's not clear.  Is this something you can help with, or are you proposing
>> that I move this out?
>>
>> I can't help with the compiler issue.
>> But the method where your compiler fail needs a small refactoring to build
>> with older compilers. This refactoring may help with the compiler crash
>> you're experimenting.
>>
>> I hope that's much clear.
>>
>> Hi,
>>
>> I've implemented the helper function for a new class. There is no
>> templated method in:
>>
>>
>>  http://voxel.jouy.inra.fr/darcs/contrib-itk/binaryAttributeMorphology/itkShapeUniqueLabelMapFilter.txx
>>
>> Instead I've used a templated function in
>>
>>
>>  http://voxel.jouy.inra.fr/darcs/contrib-itk/binaryAttributeMorphology/itkLabelMapUtilities.h
>>
>> I guess that's better for msvc 6 compatibility, and maybe for Wes'
>> compiler issue.
>> I'd be happy to get some comments on this way of implementing things.
>>
>>
>> Gaëtan
>>
>>
>> --
>> Gaëtan Lehmann
>> Biologie du Développement et de la Reproduction
>> INRA de Jouy-en-Josas (France)
>> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
>> http://voxel.jouy.inra.fr  http://www.mandriva.org
>> http://www.itk.org  http://www.clavier-dvorak.org
>>
>>
>>
>>
>> --
>> Wesley D. Turner, Ph.D.
>> Kitware, Inc.
>> R&D Engineer
>> 28 Corporate Drive
>> Clifton Park, NY 12065-8662
>> Phone: 518-371-3971 x120
>>
>>
>>
>> --
>> Wesley D. Turner, Ph.D.
>> Kitware, Inc.
>> R&D Engineer
>> 28 Corporate Drive
>> Clifton Park, NY 12065-8662
>> Phone: 518-371-3971 x120
>
> --
> Gaëtan Lehmann
> Biologie du Développement et de la Reproduction
> INRA de Jouy-en-Josas (France)
> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
> http://voxel.jouy.inra.fr  http://www.mandriva.org
> http://www.itk.org  http://www.clavier-dvorak.org
>
>



-- 
Wesley D. Turner, Ph.D.
Kitware, Inc.
R&D Engineer
28 Corporate Drive
Clifton Park, NY 12065-8662
Phone: 518-371-3971 x120