[IGSTK-Users] IGSTK-Users Digest, Vol 38, Issue 3

kai yang yk119 at hotmail.com
Mon Aug 17 01:54:21 EDT 2009 

Dear Andinet,

 

The 3D model of the organ in medince means to build a three dimensional model of the organ from its 2D CT scans, which is in dicom format. 

 

Regards

 

Yang Kai
 
> From: igstk-users-request at public.kitware.com
> Subject: IGSTK-Users Digest, Vol 38, Issue 3
> To: igstk-users at public.kitware.com
> Date: Fri, 14 Aug 2009 08:43:13 -0400
> 
> Send IGSTK-Users mailing list submissions to
> igstk-users at public.kitware.com
> 
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> 
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> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of IGSTK-Users digest..."
> 
> 
> Today's Topics:
> 
> 1. Re: IGSTK-Users Digest, Vol 38, Issue 2 (kai yang)
> 2. Re: IGSTK-Users Digest, Vol 38, Issue 2 (Andinet Enquobahrie)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Fri, 14 Aug 2009 11:09:09 +0800
> From: kai yang <yk119 at hotmail.com>
> Subject: Re: [IGSTK-Users] IGSTK-Users Digest, Vol 38, Issue 2
> To: <igstk-users at public.kitware.com>
> Message-ID: <BAY114-W3480F294B0F8385A963CD4E4020 at phx.gbl>
> Content-Type: text/plain; charset="gb2312"
> 
> 
> Dear IGSTK users:
> 
> 
> 
> I have installed and run needlebiopsy.exe, working successfully with Aurora. In the GUI, there is only 3D view of CT sections in the lower right pannel. I would like to build a 3D model of the organs in the system. So my question is:
> 
> 
> 
> Could you tell me the workflow of building 3D models of the organ from CT scan and integrated with NDI tracking system, based needlebiopsy source code?
> 
> 
> 
> Thank you and best regards
> 
> 
> 
> Kai Yang
> 
> 
> 
> > From: igstk-users-request at public.kitware.com
> > Subject: IGSTK-Users Digest, Vol 38, Issue 2
> > To: igstk-users at public.kitware.com
> > Date: Sat, 8 Aug 2009 12:00:05 -0400
> > 
> > Send IGSTK-Users mailing list submissions to
> > igstk-users at public.kitware.com
> > 
> > To subscribe or unsubscribe via the World Wide Web, visit
> > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > or, via email, send a message with subject or body 'help' to
> > igstk-users-request at public.kitware.com
> > 
> > You can reach the person managing the list at
> > igstk-users-owner at public.kitware.com
> > 
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of IGSTK-Users digest..."
> > 
> > 
> > Today's Topics:
> > 
> > 1. IGSTK-4.2 Debug w/ OpenCV (Daly, Mike)
> > 2. Re: IGSTK-4.2 Debug w/ OpenCV (Patrick Cheng)
> > 3. Re: IGSTK-4.2 Debug w/ OpenCV (Patrick Cheng)
> > 
> > 
> > ----------------------------------------------------------------------
> > 
> > Message: 1
> > Date: Fri, 7 Aug 2009 13:20:03 -0400
> > From: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > Subject: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > To: <igstk-users at public.kitware.com>
> > Message-ID:
> > <EF2641E33162A443B6A43CDBCD160A80037D65 at rmpmail01.rmpuhn.ca>
> > Content-Type: text/plain; charset="iso-8859-1"
> > 
> > IGSTK users,
> > 
> > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake options ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can successfully build and run in Release mode, but in Debug mode I encounter the following linker error for many of the example applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > 
> > LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > 
> > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under the lib\debug folder, so I'm not sure if it is looking for the wrong file somehow. I have the OpenCV lib\ folders in my path. Any help is appreciated. 
> > 
> > Also, does anyone know if you can build OpenCV using static libraries, since requiring .dlls sometimes gets annoying when distributing an .exe?
> > 
> > Thanks,
> > Mike Daly
> > 
> > 
> > 
> > 
> > This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. 
> > Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. 
> > If you have received this e-mail in error, please contact the sender and delete all copies. 
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> > 
> > ------------------------------
> > 
> > Message: 2
> > Date: Fri, 07 Aug 2009 14:06:01 -0400
> > From: Patrick Cheng <cheng at isis.georgetown.edu>
> > Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > Cc: igstk-users at public.kitware.com
> > Message-ID: <4A7C6D09.5040906 at isis.georgetown.edu>
> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> > 
> > Hi Mike,
> > 
> > There is some problem with the OpenCV library on the wiki. I haven't got 
> > time to investigate it.
> > 
> > Supposedly, cmake will handle the linking of library files 
> > automatically. when you build under debug, it will link to 
> > "cxcore110d.lib" Somehow, that link is broken here.
> > 
> > As a temporary fix, you can change the line 396 of 
> > IGSTK\Source\CMakeLists.txt to
> > 
> > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> > 
> > This will work under debug, but not release mode.
> > 
> > I will look into this problem further.
> > 
> > Patrick
> > 
> > Daly, Mike wrote:
> > > IGSTK users,
> > > 
> > > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake options 
> > > ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can 
> > > successfully build and run in Release mode, but in Debug mode I 
> > > encounter the following linker error for many of the example 
> > > applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > > 
> > > LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > > 
> > > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV 
> > > denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under the 
> > > lib\debug folder, so I'm not sure if it is looking for the wrong file 
> > > somehow. I have the OpenCV lib\ folders in my path. Any help is 
> > > appreciated.
> > > 
> > > Also, does anyone know if you can build OpenCV using static libraries, 
> > > since requiring .dlls sometimes gets annoying when distributing an .exe?
> > > 
> > > Thanks,
> > > Mike Daly
> > > 
> > > 
> > > 
> > > This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. 
> > > Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. 
> > > If you have received this e-mail in error, please contact the sender and delete all copies. 
> > > Opinions, conclusions or other information contained in this e-mail may not be that of the organization.
> > > 
> > > 
> > > ------------------------------------------------------------------------
> > > 
> > > _______________________________________________
> > > Powered by www.kitware.com
> > > 
> > > Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
> > > 
> > > Follow this link to subscribe/unsubscribe:
> > > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > 
> > 
> > ------------------------------
> > 
> > Message: 3
> > Date: Fri, 07 Aug 2009 15:20:36 -0400
> > From: Patrick Cheng <cheng at isis.georgetown.edu>
> > Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > Cc: igstk-users at public.kitware.com
> > Message-ID: <4A7C7E84.3050500 at isis.georgetown.edu>
> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> > 
> > Hi Mike,
> > 
> > It has been fixed now.
> > 
> > The correct solution should be:
> > http://public.kitware.com/cgi-bin/viewcvs.cgi/Source/CMakeLists.txt?root=IGSTK&r1=1.49&r2=1.50&sortby=date
> > 
> > Please check out the latest cvs version of IGSTK to get this fix.
> > 
> > Thank you for reporting the bug.
> > 
> > Patrick
> > 
> > Patrick Cheng wrote:
> > > Hi Mike,
> > > 
> > > There is some problem with the OpenCV library on the wiki. I haven't got 
> > > time to investigate it.
> > > 
> > > Supposedly, cmake will handle the linking of library files 
> > > automatically. when you build under debug, it will link to 
> > > "cxcore110d.lib" Somehow, that link is broken here.
> > > 
> > > As a temporary fix, you can change the line 396 of 
> > > IGSTK\Source\CMakeLists.txt to
> > > 
> > > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> > > 
> > > This will work under debug, but not release mode.
> > > 
> > > I will look into this problem further.
> > > 
> > > Patrick
> > > 
> > > Daly, Mike wrote:
> > >> IGSTK users,
> > >>
> > >> I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake 
> > >> options ON, using the OpenCV May-08-2009 snapshot provided on the 
> > >> Wiki. I can successfully build and run in Release mode, but in Debug 
> > >> mode I encounter the following linker error for many of the example 
> > >> applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > >>
> > >> LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > >>
> > >> Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV 
> > >> denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under 
> > >> the lib\debug folder, so I'm not sure if it is looking for the wrong 
> > >> file somehow. I have the OpenCV lib\ folders in my path. Any help is 
> > >> appreciated.
> > >>
> > >> Also, does anyone know if you can build OpenCV using static libraries, 
> > >> since requiring .dlls sometimes gets annoying when distributing an .exe?
> > >>
> > >> Thanks,
> > >> Mike Daly
> > >>
> > >>
> > >>
> > >> This e-mail may contain confidential and/or privileged information for 
> > >> the sole use of the intended recipient. Any review or distribution by 
> > >> anyone other than the person for whom it was originally intended is 
> > >> strictly prohibited. If you have received this e-mail in error, please 
> > >> contact the sender and delete all copies. Opinions, conclusions or 
> > >> other information contained in this e-mail may not be that of the 
> > >> organization.
> > >>
> > >>
> > >> ------------------------------------------------------------------------
> > >>
> > >> _______________________________________________
> > >> Powered by www.kitware.com
> > >>
> > >> Visit other Kitware open-source projects at 
> > >> http://www.kitware.com/opensource/opensource.html
> > >>
> > >> Follow this link to subscribe/unsubscribe:
> > >> http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > > _______________________________________________
> > > Powered by www.kitware.com
> > > 
> > > Visit other Kitware open-source projects at 
> > > http://www.kitware.com/opensource/opensource.html
> > > 
> > > Follow this link to subscribe/unsubscribe:
> > > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > > 
> > > 
> > 
> > 
> > ------------------------------
> > 
> > _______________________________________________
> > IGSTK-Users mailing list
> > IGSTK-Users at public.kitware.com
> > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > 
> > End of IGSTK-Users Digest, Vol 38, Issue 2
> > ******************************************
> 
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> ------------------------------
> 
> Message: 2
> Date: Fri, 14 Aug 2009 08:37:45 -0400
> From: Andinet Enquobahrie <andinet.enqu at kitware.com>
> Subject: Re: [IGSTK-Users] IGSTK-Users Digest, Vol 38, Issue 2
> To: kai yang <yk119 at hotmail.com>
> Cc: igstk-users at public.kitware.com
> Message-ID:
> <4717fcd60908140537u2fce3714ud6622862b105a649 at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> Hi kai yang-
> 
> Can you give us more information what you mean by 3D model of the organs?
> 
> Andinet
> 
> 2009/8/13 kai yang <yk119 at hotmail.com>
> 
> > Dear IGSTK users:
> >
> > I have installed and run needlebiopsy.exe, working successfully with
> > Aurora. In the GUI, there is only 3D view of CT sections in the lower right
> > pannel. I would like to build a *3D model *of the organs in the system. So
> > my question is:
> >
> > Could you tell me the workflow of building 3D models of the organ from CT
> > scan and integrated with NDI tracking system, based needlebiopsy source
> > code?
> >
> > Thank you and best regards
> >
> > Kai Yang
> >
> >
> > > From: igstk-users-request at public.kitware.com
> > > Subject: IGSTK-Users Digest, Vol 38, Issue 2
> > > To: igstk-users at public.kitware.com
> > > Date: Sat, 8 Aug 2009 12:00:05 -0400
> > >
> > > Send IGSTK-Users mailing list submissions to
> > > igstk-users at public.kitware.com
> > >
> > > To subscribe or unsubscribe via the World Wide Web, visit
> > > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > > or, via email, send a message with subject or body 'help' to
> > > igstk-users-request at public.kitware.com
> > >
> > > You can reach the person managing the list at
> > > igstk-users-owner at public.kitware.com
> > >
> > > When replying, please edit your Subject line so it is more specific
> > > than "Re: Contents of IGSTK-Users digest..."
> > >
> > >
> > > Today's Topics:
> > >
> > > 1. IGSTK-4.2 Debug w/ OpenCV (Daly, Mike)
> > > 2. Re: IGSTK-4.2 Debug w/ OpenCV (Patrick Cheng)
> > > 3. Re: IG STK-4.2 Debug w/ OpenCV (Patrick Cheng)
> > >
> > >
> > > ----------------------------------------------------------------------
> > >
> > > Message: 1
> > > Date: Fri, 7 Aug 2009 13:20:03 -0400
> > > From: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > > Subject: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > > To: <igstk-users at public.kitware.com>
> > > Message-ID:
> > > <EF2641E33162A443B6A43CDBCD160A80037D65 at rmpmail01.rmpuhn.ca>
> > > Content-Type: text/plain; charset="iso-8859-1"
> > >
> > > IGSTK users,
> > >
> > > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake options
> > ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can
> > successfully build and run in Release mode, but in Debug mode I encounter
> > the following linker error for many of the example applications (e.g.,
> > VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > >
> > > LINK : fatal error LNK1104: cannot open file 'cxcore110.li b'
> > >
> > > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV
> > denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under the
> > lib\debug folder, so I'm not sure if it is looking for the wrong file
> > somehow. I have the OpenCV lib\ folders in my path. Any help is appreciated.
> >
> > >
> > > Also, does anyone know if you can build OpenCV using static libraries,
> > since requiring .dlls sometimes gets annoying when distributing an .exe?
> > >
> > > Thanks,
> > > Mike Daly
> > >
> > >
> > >
> > >
> > > This e-mail may contain confidential and/or privileged information for
> > the sole use of the intended recipient.
> > > Any review or distribution by anyone other than the person for whom it
> > was originally intended is strictly prohibited.
> > > If you have received this e-mail in error, please contact the sender and
> > delete all copies.
> > > Opinions, conclusions or other information contained in this e-mail may
> > not be th at of the organization.
> > > -------------- next part --------------
> > > An HTML attachment was scrubbed...
> > > URL: <
> > http://public.kitware.com/pipermail/igstk-users/attachments/20090807/6a218bd5/attachment.html
> > >
> > >
> > > ------------------------------
> > >
> > > Message: 2
> > > Date: Fri, 07 Aug 2009 14:06:01 -0400
> > > From: Patrick Cheng <cheng at isis.georgetown.edu>
> > > Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > > To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > > Cc: igstk-users at public.kitware.com
> > > Message-ID: <4A7C6D09.5040906 at isis.georgetown.edu>
> > > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> > >
> > > Hi Mike,
> > >
> > > There is some problem with the OpenCV library on the wiki. I haven't got
> > > time to investigate it.
> > >
> > > Supposedly, cmake will handle the linking of library files
> > > automatically. when you build under debug, it w ill link to
> > > "cxcore110d.lib" Somehow, that link is broken here.
> > >
> > > As a temporary fix, you can change the line 396 of
> > > IGSTK\Source\CMakeLists.txt to
> > >
> > > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> > >
> > > This will work under debug, but not release mode.
> > >
> > > I will look into this problem further.
> > >
> > > Patrick
> > >
> > > Daly, Mike wrote:
> > > > IGSTK users,
> > > >
> > > > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake
> > options
> > > > ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can
> > > > successfully build and run in Release mode, but in Debug mode I
> > > > encounter the following linker error for many of the example
> > > > applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > > >
> > > > LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > > &gt ;
> > > > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV
> > > > denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under
> > the
> > > > lib\debug folder, so I'm not sure if it is looking for the wrong file
> > > > somehow. I have the OpenCV lib\ folders in my path. Any help is
> > > > appreciated.
> > > >
> > > > Also, does anyone know if you can build OpenCV using static libraries,
> > > > since requiring .dlls sometimes gets annoying when distributing an
> > .exe?
> > > >
> > > > Thanks,
> > > > Mike Daly
> > > >
> > > >
> > > >
> > > > This e-mail may contain confidential and/or privileged information for
> > the sole use of the intended recipient.
> > > > Any review or distribution by anyone other than the person for whom it
> > was originally intended is strictly prohibited.
> > > > If you have received this e-mail in error, please contact the sender an
> > d delete all copies.
> > > > Opinions, conclusions or other information contained in this e-mail may
> > not be that of the organization.
> > > >
> > > >
> > > >
> > ------------------------------------------------------------------------
> > > >
> > > > _______________________________________________
> > > > Powered by www.kitware.com
> > > >
> > > > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> > > >
> > > > Follow this link to subscribe/unsubscribe:
> > > > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > >
> > >
> > > ------------------------------
> > >
> > > Message: 3
> > > Date: Fri, 07 Aug 2009 15:20:36 -0400
> > > From: Patrick Cheng <cheng at isis.georgetown.edu>
> > > Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > > To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > > Cc: igstk-users at public.kitware.com
> > > Message-ID: <4A7C7E84.3050500 at isis.georgetown.edu>
> > > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> > >
> > > Hi Mike,
> > >
> > > It has been fixed now.
> > >
> > > The correct solution should be:
> > >
> > http://public.kitware.com/cgi-bin/viewcvs.cgi/Source/CMakeLists.txt?root=IGSTK&r1=1.49&r2=1.50&sortby=date
> > >
> > > Please check out the latest cvs version of IGSTK to get this fix.
> > >
> > > Thank you for reporting the bug.
> > >
> > > Patrick
> > >
> > > Patrick Cheng wrote:
> > > > Hi Mike,
> > > >
> > > > There is some problem with the OpenCV library on the wiki. I haven't
> > got
> > > > time to investigate it.
> > > >
> > > > Supposedly, cmake will handle the linking of library files
> > > > automatically. when you build under debug, it will link to
> > > > "cxcore110d.lib" Somehow, that link is broken here.
> > > >
> > > > As a temporary fix, you can change the line 396 of
> > > > IGSTK\Source\CMakeLists.txt to
> > > >
> > > > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> > > >
> > > > This will work under debug, but not release mode.
> > > >
> > > > I will look into this problem further.
> > > >
> > > > Patrick
> > > >
> > > > Daly, Mike wrote:
> > > >> IGSTK users,
> > > >>
> > > >> I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake
> > > >> options ON, using the OpenCV May-08-2009 snapshot provided on the
> > > >> Wiki. I can successfully build and run in Release mode, but in Debug
> > > >> mode I encounter the following linker error for many of the example
> > > >> applications (e.g., VideoFrameGrabberAndViewerWebcamWin,
> > NeedleBiopsy):
> > > >>
> > > >> LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > > >>< BR>> >> Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note
> > that OpenCV
> > > >> denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under
> > > >> the lib\debug folder, so I'm not sure if it is looking for the wrong
> > > >> file somehow. I have the OpenCV lib\ folders in my path. Any help is
> > > >> appreciated.
> > > >>
> > > >> Also, does anyone know if you can build OpenCV using static libraries,
> >
> > > >> since requiring .dlls sometimes gets annoying when distributing an
> > .exe?
> > > >>
> > > >> Thanks,
> > > >> Mike Daly
> > > >>
> > > >>
> > > >>
> > > >> This e-mail may contain confidential and/or privileged information for
> >
> > > >> the sole use of the intended recipient. Any review or distribution by
> > > >> anyone other than the person for whom it was originally intended is
> > > >> strictly prohi bited. If you have received this e-mail in error,
> > please
> > > >> contact the sender and delete all copies. Opinions, conclusions or
> > > >> other information contained in this e-mail may not be that of the
> > > >> organization.
> > > >>
> > > >>
> > > >>
> > ------------------------------------------------------------------------
> > > >>
> > > >> _______________________________________________
> > > >> Powered by www.kitware.com
> > > >>
> > > >> Visit other Kitware open-source projects at
> > > >> http://www.kitware.com/opensource/opensource.html
> > > >>
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