[IGSTK-Users] IGSTK-Users Digest, Vol 38, Issue 2

Fri Aug 14 08:37:45 EDT 2009

Hi kai yang-

Can you give us more information what you mean by 3D model of the organs?

Andinet

2009/8/13 kai yang <yk119 at hotmail.com>

> Dear IGSTK users:
>
> I have installed and run needlebiopsy.exe, working successfully with
> Aurora. In the GUI, there is only 3D view of CT sections in the lower right
> pannel. I would like to build a *3D model *of the organs in the system. So
> my question is:
>
> Could you tell me the workflow of building 3D models of the organ from CT
> scan and integrated with NDI tracking system, based needlebiopsy source
> code?
>
> Thank you and best regards
>
> Kai Yang
>
>
> > From: igstk-users-request at public.kitware.com
> > Subject: IGSTK-Users Digest, Vol 38, Issue 2
> > To: igstk-users at public.kitware.com
> > Date: Sat, 8 Aug 2009 12:00:05 -0400
> >
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> > Today's Topics:
> >
> > 1. IGSTK-4.2 Debug w/ OpenCV (Daly, Mike)
> > 2. Re: IGSTK-4.2 Debug w/ OpenCV (Patrick Cheng)
> > 3. Re: IG STK-4.2 Debug w/ OpenCV (Patrick Cheng)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Fri, 7 Aug 2009 13:20:03 -0400
> > From: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > Subject: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > To: <igstk-users at public.kitware.com>
> > Message-ID:
> > <EF2641E33162A443B6A43CDBCD160A80037D65 at rmpmail01.rmpuhn.ca>
> > Content-Type: text/plain; charset="iso-8859-1"
> >
> > IGSTK users,
> >
> > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake options
> ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can
> successfully build and run in Release mode, but in Debug mode I encounter
> the following linker error for many of the example applications (e.g.,
> VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> >
> > LINK : fatal error LNK1104: cannot open file 'cxcore110.li b'
> >
> > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV
> denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under the
> lib\debug folder, so I'm not sure if it is looking for the wrong file
> somehow. I have the OpenCV lib\ folders in my path. Any help is appreciated.
>
> >
> > Also, does anyone know if you can build OpenCV using static libraries,
> since requiring .dlls sometimes gets annoying when distributing an .exe?
> >
> > Thanks,
> > Mike Daly
> >
> >
> >
> >
> > This e-mail may contain confidential and/or privileged information for
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> >
> > ------------------------------
> >
> > Message: 2
> > Date: Fri, 07 Aug 2009 14:06:01 -0400
> > From: Patrick Cheng <cheng at isis.georgetown.edu>
> > Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > Cc: igstk-users at public.kitware.com
> > Message-ID: <4A7C6D09.5040906 at isis.georgetown.edu>
> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> >
> > Hi Mike,
> >
> > There is some problem with the OpenCV library on the wiki. I haven't got
> > time to investigate it.
> >
> > Supposedly, cmake will handle the linking of library files
> > automatically. when you build under debug, it w ill link to
> > "cxcore110d.lib" Somehow, that link is broken here.
> >
> > As a temporary fix, you can change the line 396 of
> > IGSTK\Source\CMakeLists.txt to
> >
> > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> >
> > This will work under debug, but not release mode.
> >
> > I will look into this problem further.
> >
> > Patrick
> >
> > Daly, Mike wrote:
> > > IGSTK users,
> > >
> > > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake
> options
> > > ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can
> > > successfully build and run in Release mode, but in Debug mode I
> > > encounter the following linker error for many of the example
> > > applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > >
> > > LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > &gt ;
> > > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV
> > > denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under
> the
> > > lib\debug folder, so I'm not sure if it is looking for the wrong file
> > > somehow. I have the OpenCV lib\ folders in my path. Any help is
> > > appreciated.
> > >
> > > Also, does anyone know if you can build OpenCV using static libraries,
> > > since requiring .dlls sometimes gets annoying when distributing an
> .exe?
> > >
> > > Thanks,
> > > Mike Daly
> > >
> > >
> > >
> > > This e-mail may contain confidential and/or privileged information for
> the sole use of the intended recipient.
> > > Any review or distribution by anyone other than the person for whom it
> was originally intended is strictly prohibited.
> > > If you have received this e-mail in error, please contact the sender an
> d delete all copies.
> > > Opinions, conclusions or other information contained in this e-mail may
> not be that of the organization.
> > >
> > >
> > >
> ------------------------------------------------------------------------
> > >
> > > _______________________________________________
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> > >
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> >
> > ------------------------------
> >
> > Message: 3
> > Date: Fri, 07 Aug 2009 15:20:36 -0400
> > From: Patrick Cheng <cheng at isis.georgetown.edu>
> > Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> > To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> > Cc: igstk-users at public.kitware.com
> > Message-ID: <4A7C7E84.3050500 at isis.georgetown.edu>
> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> >
> > Hi Mike,
> >
> > It has been fixed now.
> >
> > The correct solution should be:
> >
> http://public.kitware.com/cgi-bin/viewcvs.cgi/Source/CMakeLists.txt?root=IGSTK&r1=1.49&r2=1.50&sortby=date
> >
> > Please check out the latest cvs version of IGSTK to get this fix.
> >
> > Thank you for reporting the bug.
> >
> > Patrick
> >
> > Patrick Cheng wrote:
> > > Hi Mike,
> > >
> > > There is some problem with the OpenCV library on the wiki. I haven't
> got
> > > time to investigate it.
> > >
> > > Supposedly, cmake will handle the linking of library files
> > > automatically. when you build under debug, it will link to
> > > "cxcore110d.lib" Somehow, that link is broken here.
> > >
> > > As a temporary fix, you can change the line 396 of
> > > IGSTK\Source\CMakeLists.txt to
> > >
> > > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> > >
> > > This will work under debug, but not release mode.
> > >
> > > I will look into this problem further.
> > >
> > > Patrick
> > >
> > > Daly, Mike wrote:
> > >> IGSTK users,
> > >>
> > >> I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake
> > >> options ON, using the OpenCV May-08-2009 snapshot provided on the
> > >> Wiki. I can successfully build and run in Release mode, but in Debug
> > >> mode I encounter the following linker error for many of the example
> > >> applications (e.g., VideoFrameGrabberAndViewerWebcamWin,
> NeedleBiopsy):
> > >>
> > >> LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > >>< BR>> >> Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note
> that OpenCV
> > >> denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under
> > >> the lib\debug folder, so I'm not sure if it is looking for the wrong
> > >> file somehow. I have the OpenCV lib\ folders in my path. Any help is
> > >> appreciated.
> > >>
> > >> Also, does anyone know if you can build OpenCV using static libraries,
>
> > >> since requiring .dlls sometimes gets annoying when distributing an
> .exe?
> > >>
> > >> Thanks,
> > >> Mike Daly
> > >>
> > >>
> > >>
> > >> This e-mail may contain confidential and/or privileged information for
>
> > >> the sole use of the intended recipient. Any review or distribution by
> > >> anyone other than the person for whom it was originally intended is
> > >> strictly prohi bited. If you have received this e-mail in error,
> please
> > >> contact the sender and delete all copies. Opinions, conclusions or
> > >> other information contained in this e-mail may not be that of the
> > >> organization.
> > >>
> > >>
> > >>
> ------------------------------------------------------------------------
> > >>
> > >> _______________________________________________
> > >> Powered by www.kitware.com
> > >>
> > >> Visit other Kitware open-source projects at
> > >> http://www.kitware.com/opensource/opensource.html
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> > > _______________________________________________
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> >
> >
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> > End of IGSTK-Users Digest, Vol 38, Issue 2
> > ******************************************
>
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