[IGSTK-Users] IGSTK-Users Digest, Vol 38, Issue 2

Thu Aug 13 23:09:09 EDT 2009

Dear IGSTK users:

I have installed and run needlebiopsy.exe, working successfully with Aurora. In the GUI, there is only 3D view of CT sections in the lower right pannel. I would like to build a 3D model of the organs in the system. So my question is:

Could you tell me the workflow of building 3D models of the organ from CT scan and integrated with NDI tracking system, based needlebiopsy source code?

Thank you and best regards

Kai Yang

> From: igstk-users-request at public.kitware.com
> Subject: IGSTK-Users Digest, Vol 38, Issue 2
> To: igstk-users at public.kitware.com
> Date: Sat, 8 Aug 2009 12:00:05 -0400
> 
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> Today's Topics:
> 
> 1. IGSTK-4.2 Debug w/ OpenCV (Daly, Mike)
> 2. Re: IGSTK-4.2 Debug w/ OpenCV (Patrick Cheng)
> 3. Re: IGSTK-4.2 Debug w/ OpenCV (Patrick Cheng)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Fri, 7 Aug 2009 13:20:03 -0400
> From: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> Subject: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> To: <igstk-users at public.kitware.com>
> Message-ID:
> <EF2641E33162A443B6A43CDBCD160A80037D65 at rmpmail01.rmpuhn.ca>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> IGSTK users,
> 
> I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake options ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can successfully build and run in Release mode, but in Debug mode I encounter the following linker error for many of the example applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> 
> LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> 
> Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under the lib\debug folder, so I'm not sure if it is looking for the wrong file somehow. I have the OpenCV lib\ folders in my path. Any help is appreciated. 
> 
> Also, does anyone know if you can build OpenCV using static libraries, since requiring .dlls sometimes gets annoying when distributing an .exe?
> 
> Thanks,
> Mike Daly
> 
> 
> 
> 
> This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. 
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> ------------------------------
> 
> Message: 2
> Date: Fri, 07 Aug 2009 14:06:01 -0400
> From: Patrick Cheng <cheng at isis.georgetown.edu>
> Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> Cc: igstk-users at public.kitware.com
> Message-ID: <4A7C6D09.5040906 at isis.georgetown.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Hi Mike,
> 
> There is some problem with the OpenCV library on the wiki. I haven't got 
> time to investigate it.
> 
> Supposedly, cmake will handle the linking of library files 
> automatically. when you build under debug, it will link to 
> "cxcore110d.lib" Somehow, that link is broken here.
> 
> As a temporary fix, you can change the line 396 of 
> IGSTK\Source\CMakeLists.txt to
> 
> SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> 
> This will work under debug, but not release mode.
> 
> I will look into this problem further.
> 
> Patrick
> 
> Daly, Mike wrote:
> > IGSTK users,
> > 
> > I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake options 
> > ON, using the OpenCV May-08-2009 snapshot provided on the Wiki. I can 
> > successfully build and run in Release mode, but in Debug mode I 
> > encounter the following linker error for many of the example 
> > applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> > 
> > LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> > 
> > Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV 
> > denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under the 
> > lib\debug folder, so I'm not sure if it is looking for the wrong file 
> > somehow. I have the OpenCV lib\ folders in my path. Any help is 
> > appreciated.
> > 
> > Also, does anyone know if you can build OpenCV using static libraries, 
> > since requiring .dlls sometimes gets annoying when distributing an .exe?
> > 
> > Thanks,
> > Mike Daly
> > 
> > 
> > 
> > This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. 
> > Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. 
> > If you have received this e-mail in error, please contact the sender and delete all copies. 
> > Opinions, conclusions or other information contained in this e-mail may not be that of the organization.
> > 
> > 
> > ------------------------------------------------------------------------
> > 
> > _______________________________________________
> > Powered by www.kitware.com
> > 
> > Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
> > 
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> 
> 
> ------------------------------
> 
> Message: 3
> Date: Fri, 07 Aug 2009 15:20:36 -0400
> From: Patrick Cheng <cheng at isis.georgetown.edu>
> Subject: Re: [IGSTK-Users] IGSTK-4.2 Debug w/ OpenCV
> To: "Daly, Mike" <Mike.Daly at rmp.uhn.on.ca>
> Cc: igstk-users at public.kitware.com
> Message-ID: <4A7C7E84.3050500 at isis.georgetown.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Hi Mike,
> 
> It has been fixed now.
> 
> The correct solution should be:
> http://public.kitware.com/cgi-bin/viewcvs.cgi/Source/CMakeLists.txt?root=IGSTK&r1=1.49&r2=1.50&sortby=date
> 
> Please check out the latest cvs version of IGSTK to get this fix.
> 
> Thank you for reporting the bug.
> 
> Patrick
> 
> Patrick Cheng wrote:
> > Hi Mike,
> > 
> > There is some problem with the OpenCV library on the wiki. I haven't got 
> > time to investigate it.
> > 
> > Supposedly, cmake will handle the linking of library files 
> > automatically. when you build under debug, it will link to 
> > "cxcore110d.lib" Somehow, that link is broken here.
> > 
> > As a temporary fix, you can change the line 396 of 
> > IGSTK\Source\CMakeLists.txt to
> > 
> > SET(EXTRA_LIBS ${EXTRA_LIBS} cxcore110d cv110d highgui110d)
> > 
> > This will work under debug, but not release mode.
> > 
> > I will look into this problem further.
> > 
> > Patrick
> > 
> > Daly, Mike wrote:
> >> IGSTK users,
> >>
> >> I'm building IGSTK-4.2 with USE_OpenCV and USE_VideoImager CMake 
> >> options ON, using the OpenCV May-08-2009 snapshot provided on the 
> >> Wiki. I can successfully build and run in Release mode, but in Debug 
> >> mode I encounter the following linker error for many of the example 
> >> applications (e.g., VideoFrameGrabberAndViewerWebcamWin, NeedleBiopsy):
> >>
> >> LINK : fatal error LNK1104: cannot open file 'cxcore110.lib'
> >>
> >> Has anyone run IGSTK-4.2 in Debug mode using OpenCV? Note that OpenCV 
> >> denotes Debug libraries with an extra d (e.g., cxcore110d.lib) under 
> >> the lib\debug folder, so I'm not sure if it is looking for the wrong 
> >> file somehow. I have the OpenCV lib\ folders in my path. Any help is 
> >> appreciated.
> >>
> >> Also, does anyone know if you can build OpenCV using static libraries, 
> >> since requiring .dlls sometimes gets annoying when distributing an .exe?
> >>
> >> Thanks,
> >> Mike Daly
> >>
> >>
> >>
> >> This e-mail may contain confidential and/or privileged information for 
> >> the sole use of the intended recipient. Any review or distribution by 
> >> anyone other than the person for whom it was originally intended is 
> >> strictly prohibited. If you have received this e-mail in error, please 
> >> contact the sender and delete all copies. Opinions, conclusions or 
> >> other information contained in this e-mail may not be that of the 
> >> organization.
> >>
> >>
> >> ------------------------------------------------------------------------
> >>
> >> _______________________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at 
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > _______________________________________________
> > Powered by www.kitware.com
> > 
> > Visit other Kitware open-source projects at 
> > http://www.kitware.com/opensource/opensource.html
> > 
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
> > 
> > 
> 
> 
> ------------------------------
> 
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> 
> End of IGSTK-Users Digest, Vol 38, Issue 2
> ******************************************

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