ITK Release 4/Microscopy/Image Registration/Available Software Applications: Difference between revisions

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| ANTS || [https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt BSD] || http://www.picsl.upenn.edu/ANTS/  || Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#ANTS|Details]]
| ANTS || [https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt BSD] || http://www.picsl.upenn.edu/ANTS/  || Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#ANTS|Details]]
|-
| BRAINSFit || [http://www.nitrc.org/projects/multimodereg/ BSD] || http://www.nitrc.org/projects/multimodereg/ || Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#BRAINSFit|Details]]
|-
| BRAINSDemonWarp || [http://www.nitrc.org/projects/brainsdemonwarp BSD] || http://www.nitrc.org/projects/brainsdemonwarp || Yes ||
[[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#BRAINSDemonWarp|Details]]
|-
|-
| Elastix || [http://elastix.isi.uu.nl/legal.php BSD] || http://elastix.isi.uu.nl/about.php ||  Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#Elastix|Details]]
| Elastix || [http://elastix.isi.uu.nl/legal.php BSD] || http://elastix.isi.uu.nl/about.php ||  Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#Elastix|Details]]
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* Home: http://www.picsl.upenn.edu/ANTS/
* Home: http://www.picsl.upenn.edu/ANTS/
* License: (BSD): https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt  
* License: (BSD): https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt  
== BRAINSFit ==
* Home: http://www.nitrc.org/projects/multimodereg/
* License: (BSD): http://www.nitrc.org/projects/multimodereg
* Available as a Slicer plugin
== BRAINSDemonWarp ==
* Home: http://www.nitrc.org/projects/brainsdemonwarp
* License: (BSD): http://www.nitrc.org/projects/brainsdemonwarp
* Available as a Slicer plugin


== Elastix ==
== Elastix ==


* Home: http://elastix.isi.uu.nl/about.php
* Home: http://elastix.isi.uu.nl/
* License: (BSD) http://elastix.isi.uu.nl/legal.ph
* License: (BSD) http://elastix.isi.uu.nl/legal.php


== ImageJ ==
== ImageJ ==


Home: http://pacific.mpi-cbg.de/wiki/index.php/Fiji
* Home: http://pacific.mpi-cbg.de/wiki/index.php/Fiji
License: GPL: http://pacific.mpi-cbg.de/wiki/index.php/About
* License: GPL: http://pacific.mpi-cbg.de/wiki/index.php/About
 
== ImageJ Registration Plugins ==
 
* http://pacific.mpi-cbg.de/wiki/index.php/Category:Registration (Full and Updated List)
** http://pacific.mpi-cbg.de/wiki/index.php/SPIM_Registration
** http://pacific.mpi-cbg.de/wiki/index.php/BUnwarpJ
** http://pacific.mpi-cbg.de/wiki/index.php/Feature_Extraction (for SIFT)
** http://pacific.mpi-cbg.de/wiki/index.php/Landmark_Correspondences
** http://pacific.mpi-cbg.de/wiki/index.php/Linear_Stack_Alignment_with_SIFT
** http://pacific.mpi-cbg.de/wiki/index.php/Register_Virtual_Stack_Slices
** http://pacific.mpi-cbg.de/wiki/index.php/Stitch_and_Align_a_sequence_of_grid_images_Tutorial
** http://pacific.mpi-cbg.de/wiki/index.php/TrakEM2
** http://pacific.mpi-cbg.de/wiki/index.php/Transform_Virtual_Stack_Slices


== Slicer ==
== Slicer ==


Home: http://www.slicer.org
* Home: http://www.slicer.org
License: (BSD-Like): http://www.slicer.org/pages/LicenseText BSD-Like
* License: (BSD-Like): http://www.slicer.org/pages/LicenseText BSD-Like




== V3D ==
== V3D ==


Home: http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
* Home: http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
License: ( Non-Profit Research): http://penglab.janelia.org/proj/v3d/V3D/License.html
* License: ( Non-Profit Research): http://penglab.janelia.org/proj/v3d/V3D/License.html




Latest revision as of 09:01, 22 February 2011

This pages lists a set of software applications that are widely available (preferably under Open Source Licenses) to perform image registration in the context applicable to microscopy images.

Summary

Application License Home Uses ITK Details
ANTS BSD http://www.picsl.upenn.edu/ANTS/ Yes Details
BRAINSFit BSD http://www.nitrc.org/projects/multimodereg/ Yes Details
BRAINSDemonWarp BSD http://www.nitrc.org/projects/brainsdemonwarp Yes

Details

Elastix BSD http://elastix.isi.uu.nl/about.php Yes Details
ImageJ GPL http://pacific.mpi-cbg.de/wiki/index.php/Fiji Coming Soon... Details
Slicer BSD-Like http://www.slicer.org/ Yes Details
V3D Non-Profit Research http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html Yes Details
VV BSD and CeCILL-B http://www.creatis.insa-lyon.fr/rio/vv Yes Details

Details

ANTS

BRAINSFit

BRAINSDemonWarp

Elastix

ImageJ

ImageJ Registration Plugins

Slicer


V3D


VV

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