ITK Release 4/Microscopy/Image Registration/Available Software Applications
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This pages lists a set of software applications that are widely available (preferably under Open Source Licenses) to perform image registration in the context applicable to microscopy images.
Summary
| Application | License | Home | Uses ITK | Details |
|---|---|---|---|---|
| ANTS | BSD | http://www.picsl.upenn.edu/ANTS/ | Yes | Details |
| BRAINSFit | BSD | http://www.nitrc.org/projects/multimodereg/ | Yes | Details |
| BRAINSDemonWarp | BSD | http://www.nitrc.org/projects/brainsdemonwarp | Yes | |
| Elastix | BSD | http://elastix.isi.uu.nl/about.php | Yes | Details |
| ImageJ | GPL | http://pacific.mpi-cbg.de/wiki/index.php/Fiji | Coming Soon... | Details |
| Slicer | BSD-Like | http://www.slicer.org/ | Yes | Details |
| V3D | Non-Profit Research | http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html | Yes | Details |
| VV | BSD and CeCILL-B | http://www.creatis.insa-lyon.fr/rio/vv | Yes | Details |
Details
ANTS
- Home: http://www.picsl.upenn.edu/ANTS/
- License: (BSD): https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt
BRAINSFit
- Home: http://www.nitrc.org/projects/multimodereg/
- License: (BSD): http://www.nitrc.org/projects/multimodereg
- Available as a Slicer plugin
BRAINSDemonWarp
- Home: http://www.nitrc.org/projects/brainsdemonwarp
- License: (BSD): http://www.nitrc.org/projects/brainsdemonwarp
- Available as a Slicer plugin
Elastix
- Home: http://elastix.isi.uu.nl/
- License: (BSD) http://elastix.isi.uu.nl/legal.php
ImageJ
- Home: http://pacific.mpi-cbg.de/wiki/index.php/Fiji
- License: GPL: http://pacific.mpi-cbg.de/wiki/index.php/About
ImageJ Registration Plugins
- http://pacific.mpi-cbg.de/wiki/index.php/Category:Registration (Full and Updated List)
- http://pacific.mpi-cbg.de/wiki/index.php/SPIM_Registration
- http://pacific.mpi-cbg.de/wiki/index.php/BUnwarpJ
- http://pacific.mpi-cbg.de/wiki/index.php/Feature_Extraction (for SIFT)
- http://pacific.mpi-cbg.de/wiki/index.php/Landmark_Correspondences
- http://pacific.mpi-cbg.de/wiki/index.php/Linear_Stack_Alignment_with_SIFT
- http://pacific.mpi-cbg.de/wiki/index.php/Register_Virtual_Stack_Slices
- http://pacific.mpi-cbg.de/wiki/index.php/Stitch_and_Align_a_sequence_of_grid_images_Tutorial
- http://pacific.mpi-cbg.de/wiki/index.php/TrakEM2
- http://pacific.mpi-cbg.de/wiki/index.php/Transform_Virtual_Stack_Slices
Slicer
- Home: http://www.slicer.org
- License: (BSD-Like): http://www.slicer.org/pages/LicenseText BSD-Like
V3D
- Home: http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
- License: ( Non-Profit Research): http://penglab.janelia.org/proj/v3d/V3D/License.html
