ITK Release 4/Microscopy/Image Registration/Available Software Applications: Difference between revisions

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This pages lists a set of software applications that are widely available (preferably under Open Source Licenses) to perform image registration in the context applicable to microscopy images.
This pages lists a set of software applications that are widely available (preferably under Open Source Licenses) to perform image registration in the context applicable to microscopy images.


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{| border="1"
{| border="1"
|- bgcolor="#abcdef"
|- bgcolor="#abcdef"
! Application !! License !! Home !! Details
! Application !! License !! Home !! Uses ITK !! Details
|-
| ANTS || [https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt BSD] || http://www.picsl.upenn.edu/ANTS/  || Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#ANTS|Details]]
|-
| BRAINSFit || [http://www.nitrc.org/projects/multimodereg/ BSD] || http://www.nitrc.org/projects/multimodereg/ || Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#BRAINSFit|Details]]
|-
|-
| ANTS || Entry2 || http://www.picsl.upenn.edu/ANTS/   || [[ITK_Release_4/Microscopy/Image_Registration/Available Software Applications #ANTS]]
| BRAINSDemonWarp || [http://www.nitrc.org/projects/brainsdemonwarp BSD] || http://www.nitrc.org/projects/brainsdemonwarp || Yes ||
[[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#BRAINSDemonWarp|Details]]
|-
|-
| Elastix || Entry2 ||  
| Elastix || [http://elastix.isi.uu.nl/legal.php BSD] || http://elastix.isi.uu.nl/about.php ||  Yes || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#Elastix|Details]]
|-
|-
| V3D || Entry2 ||  
| ImageJ || [http://pacific.mpi-cbg.de/wiki/index.php/About GPL] || http://pacific.mpi-cbg.de/wiki/index.php/Fiji || Coming Soon...  || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#ImageJ|Details]]
|-
|-
| ImageJ || Entry2 ||  
| Slicer || [http://www.slicer.org/pages/LicenseText BSD-Like] || http://www.slicer.org/ || Yes  || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#Slicer|Details]]
|-
|-
| Slicer || Entry2 ||  
| V3D || [http://penglab.janelia.org/proj/v3d/V3D/License.html Non-Profit Research] || http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html || Yes ||  [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#Elastix|Details]]
|-
|-
| VV || Entry2 ||  
| VV || [http://www.opensource.org/licenses/bsd-license.php BSD] and [http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html  CeCILL-B] || http://www.creatis.insa-lyon.fr/rio/vv ||  Yes  || [[ITK_Release_4/Microscopy/Image_Registration/Available_Software_Applications#VV|Details]]
|}
|}


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== ANTS ==
== ANTS ==
* Home: http://www.picsl.upenn.edu/ANTS/
* License: (BSD): https://advants.svn.sourceforge.net/svnroot/advants/COPYING.txt
== BRAINSFit ==
* Home: http://www.nitrc.org/projects/multimodereg/
* License: (BSD): http://www.nitrc.org/projects/multimodereg
* Available as a Slicer plugin
== BRAINSDemonWarp ==
* Home: http://www.nitrc.org/projects/brainsdemonwarp
* License: (BSD): http://www.nitrc.org/projects/brainsdemonwarp
* Available as a Slicer plugin
== Elastix ==
* Home: http://elastix.isi.uu.nl/
* License: (BSD) http://elastix.isi.uu.nl/legal.php
== ImageJ ==
* Home: http://pacific.mpi-cbg.de/wiki/index.php/Fiji
* License: GPL: http://pacific.mpi-cbg.de/wiki/index.php/About
== ImageJ Registration Plugins ==
* http://pacific.mpi-cbg.de/wiki/index.php/Category:Registration (Full and Updated List)
** http://pacific.mpi-cbg.de/wiki/index.php/SPIM_Registration
** http://pacific.mpi-cbg.de/wiki/index.php/BUnwarpJ
** http://pacific.mpi-cbg.de/wiki/index.php/Feature_Extraction (for SIFT)
** http://pacific.mpi-cbg.de/wiki/index.php/Landmark_Correspondences
** http://pacific.mpi-cbg.de/wiki/index.php/Linear_Stack_Alignment_with_SIFT
** http://pacific.mpi-cbg.de/wiki/index.php/Register_Virtual_Stack_Slices
** http://pacific.mpi-cbg.de/wiki/index.php/Stitch_and_Align_a_sequence_of_grid_images_Tutorial
** http://pacific.mpi-cbg.de/wiki/index.php/TrakEM2
** http://pacific.mpi-cbg.de/wiki/index.php/Transform_Virtual_Stack_Slices
== Slicer ==
* Home: http://www.slicer.org
* License: (BSD-Like): http://www.slicer.org/pages/LicenseText BSD-Like
== V3D ==
* Home: http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
* License: ( Non-Profit Research): http://penglab.janelia.org/proj/v3d/V3D/License.html
== VV ==
* Home: http://www.creatis.insa-lyon.fr/rio/vv
* License:
** BSD http://www.opensource.org/licenses/bsd-license.php
** CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html

Latest revision as of 09:01, 22 February 2011

This pages lists a set of software applications that are widely available (preferably under Open Source Licenses) to perform image registration in the context applicable to microscopy images.

Summary

Application License Home Uses ITK Details
ANTS BSD http://www.picsl.upenn.edu/ANTS/ Yes Details
BRAINSFit BSD http://www.nitrc.org/projects/multimodereg/ Yes Details
BRAINSDemonWarp BSD http://www.nitrc.org/projects/brainsdemonwarp Yes

Details

Elastix BSD http://elastix.isi.uu.nl/about.php Yes Details
ImageJ GPL http://pacific.mpi-cbg.de/wiki/index.php/Fiji Coming Soon... Details
Slicer BSD-Like http://www.slicer.org/ Yes Details
V3D Non-Profit Research http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html Yes Details
VV BSD and CeCILL-B http://www.creatis.insa-lyon.fr/rio/vv Yes Details

Details

ANTS

BRAINSFit

BRAINSDemonWarp

Elastix

ImageJ

ImageJ Registration Plugins

Slicer


V3D


VV

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