Revision as of 16:05, 14 December 2010

How to Join the Tcon

Number to Call

1-800-728-9607 (in the US) or
+1 9139049873 (international)
access code 6815251

Webex

Project Management

February Meeting in Boston

Set for February 2-3, 2011 in Boston at Harvard Medical School.

- http://www.events.harvard.edu/web/2281
- http://www.itk.org/Wiki/Winter_ITKv4_2011_Meeting

Please register for the meeting ASAP. Here is the link for the registration:

http://www.events.harvard.edu/30325

Technical Topics

Dashboard

Dashboard Status - Today's Dashboard

Lingering Failing Tests ( Feet + Heat )

JPEG2000 on BigEndian
- Kitware/Harvard/Cosmos status update
- Able to reproduce problem?
- Anticipated resolution?

DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
- Cosmos status update
- Able to reproduce the problem?
- resolution?

VXL vcl-test_atomic_count
- Kitware status update?

KWStyle failing
- FFT related failure

ITKv4-A04

Fixing Windows 64bits problem with "long"...

Outreach

MICCAI 2011 Call for Workshops and Tutorials
- Suggested Tutorials for MICCAI 2011
Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV

Redmine demo

Project management software
SimpleITK Redmine instance on EC2

Gerrit Reviews

http://review.source.kitware.com/#q,status:open,n,z

Doxygen Nightly

- http://www.itk.org/Wiki/ITK_Documentation

ITK Data

Three levels of data :

Testing - a select set of data sets that are used for regression testing - exists in MIDAS.
Examples - datasets that are part of the itk examples - exists but didn't see on MIDAS
Development - a large collection of various image data sets and segmentations used by the ITK developers and the community to tune algorithm parameters and select optimal combinations of components in pipelines.

A data set will include:

image(s)
additional data file(s) - optional
segmentation(s) - optional
detailed description of the data

Questions

Should this be hosted via MIDAS? NCI has a large, open, repository of various images (DICOM) with a very nice front end [1], perhaps possible to leverage this?
Will kitware be willing to host such a large repository (I suspect this will be many Terabytes of data)?
What should we use as the file format for image(s), segmentation(s)? [smallest possible set of file formats that support the desired functionality].

Migration Guide Process

Simple ITK

Code generations
- Using Lua and JSON

Interfacing to
- ImageJ / Fiji
- CellProfiler

GPU

Summary of tcon with NVIDIA from Monday Nov 22 at 1pm EST (Won Ki)
GPU Acceleration - V4
- Tcon 2010-11-22

DICOM

Dan and Mathieu to report

Beginnings of a requirements document. Comments welcome.
Proposed TConf

Image Registration Revision

Start sending patches to Gerrit
- New CompositeTransform class is underway
- New DeformationFieldTransform class is underway
- Transform IO will be adjusted accordingly

Level Set

Refactoring page
- Refactoring Level-Set framework - V4

Time Stamp Proposal

Time Stamp

Modularization

Had a Tcon about modularization on Dec 3 [2].

The initial partition seems to be good to start with.

Brad King worked on cmake packaging prototypes
Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK

TIFF Update

Brad King addressed the int issues
Currently at

 git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6

Sequestered Reference Applications

We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.

Ongoing

V3D Plugins
Slicer
VV
Insight Applications now submitting
- Broken: need to use it as an example for the Migration Guide.

Development Versions following ITKv4

OTB
- http://dash.orfeo-toolbox.org/buildSummary.php?buildid=29602
GoFigure2
- Nightly build use the current ITKv4.
- http://my.cdash.org/index.php?project=GoFigure2

Pending

IGSTK, after SPIE'11 (IGSTK5.0)
Insight Applications (ITKApps from v3.20)
ITK tests from v3.20

Wrapping

Status (Alex)
Wrapping

ITK Readers for Microscopy formats

There's a need for readers in the microscopy community in order to be able to use ITK
- Zeiss (LSM and ZVI)
- Leica (LIF)
- Olympus (OIB)
- Nikon ()
BioFormats has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.

@@ Line 34: / Line 34: @@
 * JPEG2000 on BigEndian
-** Kitware/Harvard/Cosmo status update
+** Kitware/Harvard/Cosmos status update
 ** Able to reproduce problem?
 ** Anticipated resolution?
 * DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
-** Cosmo status update
+** Cosmos status update
 ** Able to reproduce the problem?
 ** resolution?

ITK/Tcons/Agendas/2010 12 14: Difference between revisions