ITK Release 3.8 Changed From Previous

This release covers the period April 13,2008 through July 29, 2008

Changes in this Release

CMakeLists.txt
ENH: Updating the ITK Version number to 3.8. (preparation for release).
ENH: Linking the GDCM_LEGACY_SILENT flag to the state of ITK_LEGACY_SILENT.
COMP: for the gcc c-compiler, disable two warnings that occur in 3rd party libraries: -Wno-uninitialized and Wno-unused-parameter.
ENH:If the user turns on the BUILD_DOXYGEN option, then search for the Doxygen-related executables.

CTestConfig.cmake

DartConfig.cmake

UseITK.cmake.in

itkConfigure.h.in

CMake/CTestCustom.ctest.in
COMP: suppress warning about libnetcdf.
ENH: added warning exceptions for gdcm deprecation warnings.
ENH: bump up max errors.

CMake/Attic/FindUUID.cmake
ENH: Move UUID module within gdcm

CMake/itkSampleBuildTest.cmake.in
ENH: Add build program.

CMake/itkTestFriendTemplatedFunction.cmake

CMake/itkTestFriendTemplatedFunction
ENH: Creating a code example similar to what is found in itk_hashmap and itk_hashtable.

CMake/itkTestTemplatePartialSpecialization

commit-checks.py
ENH: new top-level directory

Code/Algorithms/itkAutomaticTopologyMeshSource

Code/Algorithms/itkBalloonForceFilter

Code/Algorithms/itkBalloonForceFilter
COMP: initialize points
COMP:Remove useless pointers to points v1, v2, v3
STYLE: clean ComputeDt method

Code/Algorithms/itkDeformableMesh3DFilter
COMP: initialize points

Code/Algorithms/itkFFTRealToComplexConjugateImageFilter
COMP: Pipeline methods must be protected.

Code/Algorithms/itkFastMarchingExtensionImageFilter

Code/Algorithms/itkGradientDifferenceImageToImageMetric

Code/Algorithms/itkGradientDifferenceImageToImageMetr
COMP: Adding missing member variable to the PrintSelf() method.

Code/Algorithms/itkImageMomentsCalculator
ENH: Use new GetInverse API.

Code/Algorithms/itkImageRegistrationMethod
BUG: SetFixedImageRegion was missing call to this->Modified().

Code/Algorithms/itkKappaStatisticImageToImageMetr
COMP: warning,variable assigned a value that is never used.

Code/Algorithms/itkLevelSetVelocityNeighborhoodExtractor

Code/Algorithms/itkMIRegistrationFunction
private/insight-developers/2008-May/010305.html there is no potential backward compatibility issue in changing the API of PDEDeformableRegistrationFunction::GetDeformationField to return a pointer instead of a smart pointer. It would be cleaner to get a const pointer but this would break backward compatibility

Code/Algorithms/itkMeanSquareRegistrationFunction
private/insight-developers/2008-May/010305.html there is no potential backward compatibility issue in changing the API of PDEDeformableRegistrationFunction::GetDeformationField to return a pointer instead of a smart pointer. It would be cleaner to get a const pointer but this would break backward compatibility

Code/Algorithms/itkMultiResolutionPDEDeformableRegistration

Code/Algorithms/itkNCCRegistrationFunction
private/insight-developers/2008-May/010305.html there is no potential backward compatibility issue in changing the API of PDEDeformableRegistrationFunction::GetDeformationField to return a pointer instead of a smart pointer. It would be cleaner to get a const pointer but this would break backward compatibility

Code/Algorithms/itkPDEDeformableRegistrationFunction
private/insight-developers/2008-May/010305.html there is no potential backward compatibility issue in changing the API of PDEDeformableRegistrationFunction::GetDeformationField to return a pointer instead of a smart pointer. It would be cleaner to get a const pointer but this would break backward compatibility

Code/Algorithms/itkRayCastInterpolateImageFunction
ENH: fix for bug 0004644, default coordreptype is now more consistent over the toolkit

Code/Algorithms/itkSymmetricForcesDemonsRegistrationFunction
private/insight-developers/2008-May/010305.html there is no potential backward compatibility issue in changing the API of PDEDeformableRegistrationFunction::GetDeformationField to return a pointer instead of a smart pointer. It would be cleaner to get a const pointer but this would break backward compatibility

Code/Algorithms/itkVnlFFTComplexConjugateToRealImageFilter
BUG: Fixed bug #6453. VnlFFTRealToComplexConjugateImageFilter used to compute the conjugate of the transform and vnl_fft_base expects the array dimensions with the fastest varying dimension last whereas the opposite was provided by ITK. Note that a more stringent test is still needed.

Code/Algorithms/itkVnlFFTRealToComplexConjugateImageFilter
BUG: Fixed bug #6453. VnlFFTRealToComplexConjugateImageFilter used to compute the conjugate of the transform and vnl_fft_base expects the array dimensions with the fastest varying dimension last whereas the opposite was provided by ITK. Note that a more stringent test is still needed.

Code/BasicFilters/itkBinaryMorphologyImageFilter
COMP: *kernel_it > 0 is unsafe if *kernel_it is a bool. Logic using *kernel_it in Analyzekernel was changed to avoid this comparison.

Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilter
ENH: Collasped the code between itkDeformationFieldJacobianDeterminantFilter and itkDisplacementFieldJacobianDeterminantFilter so that the two classes only differ by the virual function EvaluateAtNeighborhood for the different calculations.

Code/BasicFilters/itkDeformationFieldSource
BUG: wrong type macro

Code/BasicFilters/itkDirectedHausdorffDistanceImageFilter
ENH: Added average Hausdorff distance calculation, sometimes called the modified Hausdorff distance

Code/BasicFilters/itkDirectedHausdorffDistanceImageFilter
BUG: uninitialzed ivar m_AverageHausdorffDistance.
ENH: Added average Hausdorff distance calculation, sometimes called the modified Hausdorff distance

Code/BasicFilters/itkDisplacementFieldJacobianDeterminantFilter
ENH: As discussed on the ITK teleconference on 2008-07-11, a new filer for computing Jacobian Determinants of displacement fields was necessary as the start of a replacement for the itkDeformationFieldJacobianDeterminantFilter that is computes a result that is easily confused with the correct computation of a Jacobian Determinant of a displacement field.

Code/BasicFilters/itkDisplacementFieldJacobianDeterminantFilter
COMP: shadowed declaration warning.
ENH: As discussed on the ITK teleconference on 2008-07-11, a new filer for computing Jacobian Determinants of displacement fields was necessary as the start of a replacement for the itkDeformationFieldJacobianDeterminantFilter that is computes a result that is easily confused with the correct computation of a Jacobian Determinant of a displacement field.

Code/BasicFilters/itkEigenAnalysis2DImageFilter
STYLE: updated comment, see bug 5435

Code/BasicFilters/itkExtractImageFilter

Code/BasicFilters/itkExtractImageFilter
COMP: Fix GCC potential warning when input and output pixel types are different

Code/BasicFilters/itkHausdorffDistanceImageFilter
ENH: Added average Hausdorff distance calculation, sometimes called the modified Hausdorff distance

Code/BasicFilters/itkHausdorffDistanceImageFilter
BUG: Forgot to add AverageHausdorf ivar to PrintSelf

Code/BasicFilters/itkLog10ImageFilter
BUG: 2547 static_cast instead of old-style cast

Code/BasicFilters/itkLogImageFilter
BUG: 2547 static_cast instead of old-style cast

Code/BasicFilters/itkPointSetToImageFilter

Code/BasicFilters/itkResampleImageFilter
ENH: Const correctness within registration framework

Code/BasicFilters/itkSignedMaurerDistanceMapImageFilter
STYLE: Fixing coding style.

Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter
COMP: more boolean expression fixes
COMP: Fixing warnings about "condition[1-4]" variables shadowing others.

Code/BasicFilters/itkTileImageFilter

Code/BasicFilters/itkVectorCastImageFilter
ENH: This filter needs the numeric traits of FixedArray.

Code/BasicFilters/itkVotingBinaryHoleFillingImageFilter
COMP: Warning under VS9 that derived class has member function that overrode parent yet differed by const of args.

Code/BasicFilters/itkVotingBinaryImageFilter

Code/BasicFilters/itkWarpImageFilter

Code/BasicFilters/itkWarpVectorImageFilter

Code/BasicFilters/itkWarpVectorImageFilter
COMP: Fixing PrintSelf() defect. Missing to print out the OutputDirection in the PrintSelf() method.

Code/Common/CMakeLists.txt
ENH: Adding instantiation of vnl_vector for size_t, needed in Win64.
ENH: Adding NumericTraits for FixedArray.

Code/Common/itkBSplineDeformableTransform
BUG: Not all pathways set inside to default to true

Code/Common/itkBSplineDerivativeKernelFunction
BUG: 2547 static_cast instead of old-style cast

Code/Common/itkByteSwapper

Code/Common/itkCellInterface
ENH: Add methods to compute normal and area for a TriangleCell.

Code/Common/itkCenteredTransformInitializer
BUG: uninitialized memory. m_UseMoments was not initialized in constructor.

Code/Common/itkColorTable
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkDecisionRuleBase
COMP: missing copy constructor.

Code/Common/itkDenseFiniteDifferenceImageFilter
BUG: 3972. Explicitely added calls to m_UpdateBuffer->Modified() and GetOutput()->Modified() after the modification of these images through iterators

Code/Common/itkDifferenceImageFilter
ENH: Allows pixels at edges to be ignored - helps when one image has been resampled

Code/Common/itkDifferenceImageFilter
COMP: warning, difference is a shadowed variable.
PERF: Optimized for improved speed

Code/Common/itkExceptionObject
private/insight-developers/2008-May/010395.html
BUG: Fixed typo in ExceptionObject::SetDescription, reported by Karthik Krishnan, Re: [Insight-developers] ExceptionObject Borland Compile errors
2008-May/010353.html

Code/Common/itkExceptionObject
private/insight-developers/2008-May/010395.html
2008-May/010353.html

Code/Common/itkFixedArray

Code/Common/itkImageFunction
ENH: warning for deprecated mispelled method names.

Code/Common/itkImageIterator

Code/Common/itkImportImageContainer
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkInterpolateImageFunction
BUG: 0007013, wrong template arguments for VectorInterpolateImageFunction

Code/Common/itkLandmarkBasedTransformInitializer
ENH: give more flexibility to the parameters

Code/Common/itkLevelOrderTreeIterator
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkLightObject
COMP: fixed compiler warning with Wundef
BUG: need additional check for __CYGWIN__ when selecting a windows VS compiler.

Code/Common/itkLightObject
COMP: fixed compiler warning with Wundef
ENH: Cygwin atomic operations now come from win32 (small clean up)
COMP: fix compiler error on Mac OS X

Code/Common/itkLinearInterpolateImageFunction
ENH: fix for bug 0004644, default coordreptype is now more consistent over the toolkit

Code/Common/itkLogger
COMP: missing copy constructor.

Code/Common/itkMacro
BUG: resolve 0916; depricate filename parsing and add test

Code/Common/itkMatrixOffsetTransformBase
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Code/Common/itkMatrixOffsetTransformBase
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.
ENH: warn user when too few parameters are passed

Code/Common/itkMaximumRatioDecisionRule
COMP: missing copy constructor.

Code/Common/itkMesh
ENH: ZipFunction now handle the case where two QEdges would be joined into an antenna by removing the two QEdges altogether. the euler op JoinVertex now handle the case where the candidate edge belongs to an isolated triangle. It discard the triangle and associated edge for the time being, but we could choose to keep it if we do not want to change the number of component of the mesh, i.e. the euler constant. It also handle more nicely tetrahedron and separable cycles.

Code/Common/itkMe
ENH: new cell container design with specific Edge container.

Code/Common/itkMetaDataObject
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkMultiThreader
COMP: Adding headers needed by Gcc4.3
COMP: wrong #ifdef for Visual Studio compilers. COMP: warnings.

Code/Common/itkMultipleLogOutput
COMP: missing copy constructor.

Code/Common/itkNearestNeighborInterpolateImageFunction
ENH: fix for bug 0004644, default coordreptype is now more consistent over the toolkit

Code/Common/itkNeighborhood

Code/Common/itkNeighborhood
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkNumericTraits
COMP: add missing method OneValue()

Code/Common/itkNumericTraitsFixedArrayPixel
ENH: Adding NumericTraits for FixedArray.

Code/Common/itkNumericTraitsFixedArrayPixel
ENH: Adding instantiation for dimension 1.

Code/Common/itkNumericTraitsRGBAPixel

Code/Common/itkNumericTraitsRGBAPixel
ENH: Adding NumericTraits for RGBAPixel type.

Code/Common/itkNumericTraitsRGBPixel

Code/Common/itkNumericTraitsVectorPixel
COMP: Adding the implementations of OneValue().
ENH: Adding instantiation for dimension 1.

Code/Common/itkNumericTraitsVectorPixel
COMP: Adding the implementations of OneValue().

Code/Common/itkObjectFactoryBase
COMP: Adding headers needed by Gcc4.3

Code/Common/itkOffset
COMP: warnings.

Code/Common/itkOrientedImage

Code/Common/itkPointSet
COMP: warnings.

Code/Common/itkPreOrderTreeIterator
ENH: Improvements by Ivo Wolf

Code/Common/itkRGBAPixel
ENH: Adding NumericTraits for RGBAPixel type.

Code/Common/itkRGBPixel

Code/Common/itkSize
ENH: Fixing constness of operator+, operator+, and operator*.

Code/Common/itkSmartPointer

Code/Common/itkTestMain
COMP: warnings.

Code/Common/itkTimeStamp
ENH: Use atomic operations to improve the performance of ModifiedTime increments (answer to bug #6599)

Code/Common/itkTransform
BUG: itkLegacyMacro must have trailing ;
ENH: Making GetInverse method virtual.
COMP: warnings.

Code/Common/itkTransformBase

Code/Common/itkTransformFactory
ENH: Removing a commented out std::cout that presumably was used for debugging at some point.

Code/Common/itkTransformFactoryBase

Code/Common/itkTreeChangeEvent
ENH: Improvements by Ivo Wolf

Code/Common/itkTreeContainer
ENH: Improvements by Ivo Wolf

Code/Common/itkTreeContainerBase
ENH: Improvements by Ivo Wolf

Code/Common/itkTreeIteratorBase
ENH: Improvements by Ivo Wolf

Code/Common/itkTreeIteratorBase
COMP: MSVC6 errors
ENH: Improvements by Ivo Wolf

Code/Common/itkTreeIteratorClone
ENH: Improvements by Ivo Wolf

Code/Common/itkTreeNode
BUG: Destructor should set the children to null
COMP: Fixing #include missing for gcc 4.3.
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkTriangleCell
ENH: Add methods to compute barycenter in TriangleCell, and some specific barycenter location (center of mass, circumcenter...)
BUG: only add 3 points whenever begin and last iterators are provided. m_PointIds is now a vector

Code/Common/itkTriangleCell
BUG: Fixing the computation of the Orthonormal basis.
BUG: i is now declared only once in ComputeCircumcenter method
ENH: Add methods to compute normal and area for a TriangleCell.

Code/Common/itkVariableLengthVector
STYLE: Fixed typo in Doxygen documentation.

Code/Common/itkVariableLengthVector
COMP: Adding #include of headers, now required by gcc 4.3

Code/Common/itkVector

Code/Common/itkVectorImage
BUG: Typedef of the ValueType was incorrect. It should typedef to the facade pixel: VariableLengthVector<TPixel> rather than the internal pixel type: TPixel

Code/Common/itkVectorInterpolateImageFunction
BUG: 0007013, wrong template arguments for VectorInterpolateImageFunction

Code/Common/itkVectorLinearInterpolateImageFunction
ENH: fix for bug 0004644, default coordreptype is now more consistent over the toolkit

Code/Common/itkVectorNearestNeighborInterpolateImageFunction
ENH: fix for bug 0004644, default coordreptype is now more consistent over the toolkit

Code/Common/itkWin32Header
025929.html

Code/Common/itkXMLFileOutputWindow
COMP: Adding headers needed by Gcc4.3

Code/Common/itkZeroFluxNeumannBoundaryCondition
ENH: Wrapped illustrative example image in code tags for literal formatting in doxygen

Code/Common/itk_hash_map

Code/Common/itk_hash_set

Code/Common/itk_hashtable
COMP: warnings.

Code/Common/vnl_fft_base+double.3-

Code/Common/vnl_fft_base+float.3-

Code/Common/vnl_vector+size_t-
ENH: Adding instantiation of vnl_vector for size_t, needed in Win64.

Code/IO/CMakeLists.txt
COMP: Remove -O0 flag from TIFFImageIO. Experiment to isolate errors did not work.
COMP: for gcc compiler, suppress warnings in JPEGImageIO and PNGImageIO.
COMP: avoid Sun compiler anachronism warning.

Code/IO/itkAnalyzeImageIO

COMP: change DIMS to something unlikely to collide with another definition of DIMS
ENH: Cleaned up the processing of files to be more like the rest of the ITK IO mechanisms using itksys::SystemTools::GetFilenameLastExtension and itksys::SystemTools::GetFilenameWithoutLastExtension

Code/IO/itkBMPImageIO
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkBrains2HeaderBase
COMP: Adding #include headers that are now required by GCC 4.3.

Code/IO/itkBrains2MaskImageIO

BUG: All files that contained the five character string ".mask" were reported as readable and writeable by this IO filter even if it was a substring in the middle of the file name. This was fixed by using more robust file extension processing.

Code/IO/itkBrains2MaskImageIO
COMP: wrong #ifdef for Visual Studio compilers.

Code/IO/itkDICOMImageIO2
COMP: wrong #ifdef for Visual Studio compilers.

Code/IO/itkGDCMImageIO

ENH: Add comment where the 3rd comp is being lost when writing DICOM
ENH: remove assert. Remove dead code (cannot write floating point image anyway). And remove dummy UID generation
ENH: Do not try to read the image, when gdcm cannot read it

Code/IO/itkIOCommon
BUG: resolve 0916; depricate filename parsing and add test

Code/IO/itkImageFileReader
ENH: removing std::ends from ExceptionMacro() to avoid truncation in exception error message.

Code/IO/itkImageFileWriter
COMP: add additional {}'s to try and avoid error in exception handling on some VS versions.

Code/IO/itkImageIOBase
BUG: fixing bug 4560; add exceptions when indices are out of range; add tests
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkImageIOBase

Code/IO/itkJPEGImageIO

Code/IO/itkMetaImageIO
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkNiftiImageIO

COMP: shadowed variable warning.
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkPNGImageIO

en-us/library/yz2ez4as(VS.80).aspx

Code/IO/itkPolygonGroupSpatialObjectXMLFile
COMP: warnings, missing copy constructors.

Code/IO/itkSiemensVisionImageIO
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkStimulateImageIO
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkTIFFImageIO
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkTransformFileReader
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkVTKImageIO
COMP: warnings about implicit 64-bit to 32-bit loss of precision.

Code/IO/itkXMLFile

Code/IO/itkXMLFile
COMP: warnings, missing copy constructors.

Code/Numerics/itkExhaustiveOptimizer
COMP: Fix GCC 4.2.3 (-Wall) warnings.

Code/Numerics/itkFRPROptimizer
ENH: Gradient can be a fixed-step gradient (mean magnitude of each component is 1)
PERF: Changed to pass by reference for faster performance.

Code/Numerics/itkFRPROptimizer

Code/Numerics/itkMultipleValuedVnlCostFunctionAdaptor
BUG: 6887. Now taking m_Scales into account in method ConvertExternalToInternalGradient().

Code/Numerics/itkOnePlusOneEvolutionaryOptimizer
ENH: improve debugging output

Code/Numerics/itkOptimizer

Code/Numerics/itkPowellOptimizer
ENH: Cleanup to remove duplicate code
BUG: Correctly brackets the minimum. Addresses bug #4827

Code/Numerics/itkPowellOptimizer
BUG: Correctly brackets the minimum. Addresses bug #4827

Code/Numerics/itkSingleValuedVnlCostFunctionAdaptor

Code/Numerics/FEM/CMakeLists.txt
COMP: remove itkFEMMaterialBase.cxx and itkFEMLoadBase.cxx from library since they do not contain any code.

Code/Numerics/FEM/itkFEMLinearSystemWrapperItpack

Code/Numerics/FEM/itkFEMObjectFactory
COMP: Adding #include for cstdlib that is now required by GCC 4.3.

Code/Numerics/Statistics/d9gmit
COMP: possible use of uninitialized variable.

Code/Numerics/Statistics/dlngam
COMP: possible use of uninitialized variable.

Code/Numerics/Statistics/itkCovarianceCalculator
BUG: 7220 division by zero if first or all bins empty

Code/Numerics/Statistics/itkCovarianceCalculator
BUG: 7220 division by zero if first bin or all bins empty. BUG: txx did not include header

Code/Numerics/Statistics/itkHistogram

COMP: Typo on the type used inside NumericTraits<>.

Code/Numerics/Statistics/itkKdTree

Code/Numerics/Statistics/itkKdTree
COMP: Fixing warnings about conversion from double to MeasurementType.
ENH: Replacing std::cout with the new last argument of the PrintTree() method.

Code/Numerics/Statistics/itkKdTreeGenerator

Code/Numerics/Statistics/itkKdTreeGenerator
STYLE: Typo in endRightIndex (it was missing the "t").

Code/Numerics/Statistics/itkListSample

Code/Numerics/Statistics/itkStatisticsAlgorithm
STYLE: Adding documentation explaining the Partition and QuickSelect algorithms.

Code/Numerics/Statistics/itkStatisticsAlgorithm
COMP: Fixing warning about comparison between signed and unsigned ints.

Code/Numerics/Statistics/itkWeightedCentroidKdTreeGenerator

Code/Numerics/Statistics/itkWeightedCentroidKdTreeGenerator
COMP: Fixing warnings about comparison between signed and unsigned ints.

Code/Numerics/Statistics/itkWeightedCovarianceCalculator
BUG: 7220 division by zero if first or all bins empty

Code/Patented/itkActiveShapeModelCalculator
COMP: possible use of uninitialized variables, dxyRef1 and dxyRef2.

Code/Patented/itkActiveShapeModelGradientSearchMethod
COMP: possible use of uninitialized variables, dxyRef1 and dxyRef2.

Code/Review/CMakeLists.txt

Code/Review/itkAddConstantToImageFilter

Code/Review/itkBSplineScatteredDataPointSetToImageFilter

Code/Review/itkBSplineScatteredDataPointSetToImageFilter
COMP: shadowed variable warning.
COMP: Addressing warnings in gcc 4.1

Code/Review/itkBruker2DSEQImageIO
ENH: The Read() function was modified so that it uses the same itksys::SystemTools functions to create the 2dseq filename string as CanReadFile().
COMP: Removing unnecessary std::string::clear() call. The method is not available in VS6.0.
ENH: Fixing style errors reported by KWStyle.

Code/Review/itkBruker2DSEQImageIO
STYLE: Fixed style errors using KWStyle program to test for problems.
ENH: Fixing style errors reported by KWStyle.

Code/Review/itkBruker2DSEQImageIOFactory
STYLE: Fixed style errors using KWStyle program to test for problems.

Code/Review/itkComposeRGBAImageFilter

Code/Review/Attic/itkConformalFlatteningFunction
ENH: this file is not needed anymore.

Code/Review/itkConformalFlatteningMeshFilter
ENH: new conformaspherical flattening code from Yi Gao, following work at the NAMIC week.
ENH: meshtype shoul dnot be hardcoded. Modified the class to be compliant to a MeshToMesh filter design.

Code/Review/itkConformalFlatteningMeshFilter
BUG: multiple decalarations of i in GenerateData method
COMP: sort and round function not found as it.
BUG: remove class definition from COnformalFlattening class. One file, One class. ENH: Create a conformalFlattening test which uses a QuadEdgeMesh and add it to the test suite.

Code/Review/itkCoxDeBoorBSplineKernelFunction
COMP: Addressing warnings in gcc 4.1

Code/Review/itkDiffeomorphicDemonsRegistrationFilter

Code/Review/itkDiffeomorphicDemonsRegistrationFilter
BUG: Need to set directions in addition to origin and spacing.
COMP: Fixing PrintSelf defects.

Code/Review/itkDivideByConstantImageFilter
STYLE: Improving documentation. These filters are unrelated to the ExtractImageFilter.

Code/Review/itkESMDemonsRegistrationFunction

Code/Review/itkESMDemonsRegistrationFunction
BUG: Need to set directions in addition to origin and spacing.
COMP: Borland doesn't support the use of "or" in lieu of the logical operator "||".

Code/Review/itkExponentialDeformationFieldImageFilter

Code/Review/itkFFTComplexToComplexImageFilter

Code/Review/itkFFTComplexToComplexImageFilter
COMP: Fixing the API after removing direction from the template parameters.

Code/Review/itkFFTWComplexToComplexImageFilter
COMP: Fixing the API after removing direction from the template parameters.

Code/Review/itkFastSymmetricForcesDemonsRegistrationFilter
ENH: Improving const-correctness in the Downcasting method.

Code/Review/itkGeometricalQuadEdge
ENH: performances. Decimation pipeline 16% faster.

Code/Review/itkGridForwardWarpImageFilter

Code/Review/itkGridForwardWarpImageFilter
COMP: Borland doesn't support the use of "or" in lieu of the logical operator "||".

Code/Review/Attic/itkKappaSigmaThresholdCalculator

Code/Review/itkKappaSigmaThresholdImageCalculator
STYLE: Fixing style.

Code/Review/itkKappaSigmaThresholdImageFilter
COMP: Input image must be const

Code/Review/itkKappaSigmaThresholdImageFilter
COMP: Fixing PrintSelf defects.

Code/Review/itkMINC2ImageIO
BUG: fixed incorrect memory deallocation, fixed memory leaks
COMP: Fixing warning about comparison of signed vs unsigned ints.

Code/Review/itkMagnitudeAndPhaseToComplexImageFilter
COMP: Fixing ConcepChecking lines.

Code/Review/itkMemoryUsageObserver
ENH: For Mac OS X ( version >10.2 ) the vmmap command can have different output between machines. Handle the case where vmmap outputs don't have Region type summary section.

Code/Review/itkMultiplyByConstantImageFilter
STYLE: Improving documentation. These filters are unrelated to the ExtractImageFilter.

Code/Review/itkOptImageToImageMetric
BUG: Reverting to the original implementation - if used in a pipeline, fixedImage's region may be undefined when SetFixedImage is called.
BUG: in SetFixedImage, a failure to check for NULL pointer caused crashes.
ENH: Const correctness within registration framework

Code/Review/itkOptImageToImageMetr
BUG: Not all pathways correctly set test for valid sample to default to true

Code/Review/itkOptResampleImageFilter
ENH: Const correctness within registration framework

Code/Review/itkPhilipsPAR
BUG: comparison with an unitialized variable.
COMP: indentation and style.
STYLE: Fixing style errors reported by KWStyle.

Code/Review/itkPhilipsPAR
STYLE: Fixed style errors using KWStyle program to test for problems.

Code/Review/itkPhilipsRECImageIO

COMP: Fixing warning related to signed versus unsigned int comparison.
STYLE: Fixing style errors reported by KWStyle.

Code/Review/itkPhilipsRECImageIO
STYLE: Fixed style errors using KWStyle program to test for problems.
STYLE: Fixing style errors reported by KWStyle.

Code/Review/itkPhilipsRECImageIOFactory
STYLE: Fixed style errors using KWStyle program to test for problems.

Code/Review/itkQuadEdge
ENH: performances. Decimation pipeline 16% faster.

Code/Review/itkQuadEdgeMesh
ENH: new cell container design with specific Edge container.
ENH: reorder point container to have consecutive IDs before writting a mesh.

Code/Review/itkQuadEdgeMe

ENH:Add specific Graft and Initialize methods
ENH: remove unecessary dynamic cast.
COMP: possibly unitialize variable.
COMP: remove comma misused l472
BUG: typo.

Code/Review/itkQuadEdgeMeshBoundaryEdgesMeshFunction
ENH: new cell container design with specific Edge container.

Code/Review/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction
STYLE: access the status of the edge (if it can be flipped or not and why)

Code/Review/itkQuadEdgeMeshEulerOperatorJoinVertexFunction
ENH:Add one more test for join vertex operator in the case where one edge is linking different boundary. NOTE: with this last modification this edge can not be collapsed.
BUG: add PrintSelf method
COMP: Adding the missing PrintSelf() method.
STYLE: start doxygen documentation of undocumented methods.
BUG: Correct the tetraedron detection case
BUG:missing includes.

Code/Review/itkQuadEdgeMeshEulerOperatorJoinVertexFunction
STYLE: clean
ENH:Add one more test for join vertex operator in the case where one edge is linking different boundary. NOTE: with this last modification this edge can not be collapsed.
ENH: performances. Decimation pipeline 16% faster.
STYLE: correct typo error for FACE_ISOLATED.
STYLE: Introduce a new type EdgeStatusType (enumerated type)
STYLE: Split Evaluate method into different methods depending on the status of the considered edge.
STYLE: start doxygen documentation of undocumented methods.
ENH: in the case of an isolated polygon, return one quad-edge from NewDest else from NewOrg if there are any.
BUG: Correct the tetraedron detection case
ENH: ZipFunction now handle the case where two QEdges would be joined into an antenna by removing the two QEdges altogether. the euler op JoinVertex now handle the case where the candidate edge belongs to an isolated triangle. It discard the triangle and associated edge for the time being, but we could choose to keep it if we do not want to change the number of component of the mesh, i.e. the euler constant. It also handle more nicely tetrahedron and separable cycles.

Code/Review/itkQuadEdgeMeshPoint
BUG: Constructor taking a Superclass (itk::Point) as argument was missing.

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter
COMP: output is now an OutputMeshType::Pointer

Code/Review/itkQuadEdgeMeshZipMeshFunction
ENH: ZipFunction now handle the case where two QEdges would be joined into an antenna by removing the two QEdges altogether. the euler op JoinVertex now handle the case where the candidate edge belongs to an isolated triangle. It discard the triangle and associated edge for the time being, but we could choose to keep it if we do not want to change the number of component of the mesh, i.e. the euler constant. It also handle more nicely tetrahedron and separable cycles.

Code/Review/itkRealAndImaginaryToComplexImageFilter
COMP: Fixing ConcepChecking lines.

Code/Review/itkSliceBySliceImageFilter
STYLE: Add documentation in docstring.
COMP: shadowed declaration warning.

Code/Review/itkSliceBySliceImageFilter
COMP: shadowed declaration warning.
COMP: Adding missing member variables to PrintSelf() method.
COMP: Fixed compilation problem in VS6.0. Replacing another "typename" with ITK_TYPENAME.

Code/Review/itkSmapsFileParser
COMP: for_each is a std function.

Code/Review/itkSmapsFileParser
ENH: For Mac OS X ( version >10.2 ) the vmmap command can have different output between machines. Handle the case where vmmap outputs don't have Region type summary section.

Code/Review/itkSubtractConstantFromImageFilter

Code/Review/itkTransformToDeformationFieldSource
ENH: Introduced concept checking in TransformToDeformationFieldSource to ensure that the output image has a pixel type which is a vector whose dimension is equal to the image dimension

Code/Review/itkTransformToDeformationFieldSource

Code/Review/itkTxtTransformIO
BUG: Adding the ".tfm" extension as a recognized extension for writing.

Code/Review/itkVTKPolyDataReader
ENH: fully support of edges cells. Canveat for vertices, and all kind of polygonal cells added. This filter can only handle edges and triangles at that stage.

Code/Review/itkVTKPolyDataWriter
ENH: change update to virtual method, and m_Input to protected

Code/Review/itkVTKPolyDataWriter
ENH:can now save all kind of polygonal meshes.
ENH: fully support of edges cells. Canveat for vertices, and all kind of polygonal cells added. This filter can only handle edges and triangles at that stage.

Code/Review/itkVectorCentralDifferenceImageFunction

Code/Review/itkVectorLinearInterpolateNearestNeighborExtrapolateImageFunction
COMP: Addressing Borland warnings about unused function arguments.
COMP: If one of several virtual methods is overridden in a subclass, then they all must be overridden.

Code/Review/itkVectorLinearInterpolateNearestNeighborExtrapolateImageFunction
BUG: Override the implementation of VectorLinearInterpolateNearestNeighborExtrapolateImageFunction::EvaluateAtIndex to be consistent with VectorLinearInterpolateNearestNeighborExtrapolateImageFunction::EvaluateAtContinuousIndex. Namely IsInsideBuffer always returns true and EvaluateAtIndex uses NN extrapolation if necessary

Code/Review/itkVoxBoCUBImageIO
ENH: minor trick to please bcc32 and not add extra copy overhead
COMP: Fixing warning about uninitialized variable.
COMP: That quirky Borland compiler needed a temporary std::string to compile.

Code/Review/itkVoxBoCUBImageIO

Code/Review/itkVoxBoCUBImageIOFactory

Code/Review/itkWarpHarmonicEnergyCalculator
COMP: Removed declarations of unimplemented methods.

Code/Review/itkWarpHarmonicEnergyCalculator
COMP: Fixing PrintSelf defects.

Code/Review/itkWarpJacobianDeterminantFilter
ENH: Intermediate commit while resolving the itkDisplacementFieldJacobianDeterminant and itkDeformationFieldJacobianDeterminant into two well documented and consistant classes.

Code/SpatialObject/itkArrowSpatialObject
ENH: warning for deprecated mispelled method names.

Code/SpatialObject/itkArrowSpatialObject

Code/SpatialObject/itkBlobSpatialObject
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Code/SpatialObject/itkBoxSpatialObject

Code/SpatialObject/itkContourSpatialObject

Code/SpatialObject/itkCylinderSpatialObject
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Code/SpatialObject/itkEllipseSpatialObject
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Code/SpatialObject/itkGaussianSpatialObject

Code/SpatialObject/itkGroupSpatialObject

Code/SpatialObject/itkImageMaskSpatialObject
COMP: Dealing with the new API for the GetInverse() method, and the LEGACY variables.
ENH: implemented GetAxisAlignedBoundingBoxRegion() for image dimensions other than 3D

Code/SpatialObject/itkImageSpatialObject
COMP: Missing to convert a line when removing the new API of the GetInverse() method.
COMP: Dealing with the new API for the GetInverse() method, and the LEGACY variables.

Code/SpatialObject/itkLandmarkSpatialObject

Code/SpatialObject/itkLineSpatialObject
COMP: Dealing with the new API for the GetInverse() method, and the LEGACY variables.

Code/SpatialObject/itkMeshSpatialObject

Code/SpatialObject/itkPlaneSpatialObject

Code/SpatialObject/itkPointBasedSpatialObject

Code/SpatialObject/itkPolygonGroupSpatialObject

Code/SpatialObject/itkPolygonSpatialObject
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Code/SpatialObject/itkSpatialObject

Code/SpatialObject/itkSpatialObject
COMP: Dealing with the new API for the GetInverse() method, and the LEGACY variables.

Code/SpatialObject/itkSpatialObjectTreeContainer
COMP: Warning

Code/SpatialObject/itkSurfaceSpatialObject

Code/SpatialObject/itkTubeSpatialObject
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Examples/DataRepresentation/Image/CMakeLists.txt

Examples/DataRepresentation/Mesh/CMakeLists.txt

Examples/DataRepresentation/Path/CMakeLists.txt

Examples/Filtering/CMakeLists.txt

Examples/Filtering/FFTDirectInverse

Examples/Filtering/SignedDanielssonDistanceMapImageFilter

Examples/Iterators/CMakeLists.txt

Examples/Patented/CMakeLists.txt
ENH: Adding tests for 3D and for 2D with a distance map.

Examples/Patented/IterativeClosestPoint1
COMP: wrong #ifdef for Visual Studio compilers.

Examples/Patented/IterativeClosestPoint2
COMP: wrong #ifdef for Visual Studio compilers.

Examples/Patented/IterativeClosestPoint3
COMP: wrong #ifdef for Visual Studio compilers.

Examples/Registration/BSplineWarping1

Examples/Registration/BSplineWarping2

Examples/Registration/CMakeLists.txt
COMP: increase pixel error tolerance for DeformableRegistration5Test for gcc 4.3.

Examples/Registration/DeformableRegistration12

Examples/Registration/DeformableRegistration13

Examples/Registration/DeformableRegistration14

Examples/Registration/DeformableRegistration15

Examples/Registration/DeformableRegistration16

Examples/Registration/DeformableRegistration17

Examples/Registration/DeformableRegistration4

Examples/Registration/DeformableRegistration6

Examples/Registration/DeformableRegistration7

Examples/Registration/DeformableRegistration8

Examples/Registration/ImageRegistration18

Examples/Segmentation/CMakeLists.txt

Examples/Statistics/CMakeLists.txt

Testing/CMakeLists.txt

Testing/CTestConfig.cmake

Testing/Code/Algorithms/CMakeLists.txt
ENH: added a test to compare the result of different FFTRealToComplexConjugateImageFilter implementations, cf. bug #6453

Testing/Code/Algorithms/itkAlgorithmsHeaderTest
COMP: Fixing signature of the main() method.

Testing/Code/Algorithms/itkAlgorithmsTests4
ENH: added a test to compare the result of different FFTRealToComplexConjugateImageFilter implementations, cf. bug #6453

Testing/Code/Algorithms/itkBioGeneNetworkTest
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/Algorithms/itkBioGeneTest
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/Algorithms/itkBioGenomeTest
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/Algorithms/itkCurvatureFlowTest
COMP: Adding additional output if a test fails.

Testing/Code/Algorithms/itkFFTTest
ENH: added a test to compare the result of different FFTRealToComplexConjugateImageFilter implementations, cf. bug #6453

Testing/Code/Algorithms/itkImageRegistrationMethodTest
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkLaplacianSegmentationLevelSetImageFilterTest
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkMeanReciprocalSquareDifferencePointSetToImageMetricTest
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkMeanSquaresPointSetToImageMetricTest
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkNormalizedCorrelationPointSetToImageMetricTest
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkPointSetToImageRegistrationTest_1
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkPointSetToPointSetRegistrationTest
COMP: wrong #ifdef for Visual Studio compilers.

Testing/Code/Algorithms/itkRegionGrow2DTest
BUG: reference to uninitialized variable in print.

Testing/Code/BasicFilters/CMakeLists.txt
ENH: Expanded the test to include some actual calculations so that we can ensure that the new versions of this filter produce the same results.

Testing/Code/BasicFilters/itkBasicFiltersHeaderTest
ENH: Expanded the test to include some actual calculations so that we can ensure that the new versions of this filter produce the same results.

Testing/Code/BasicFilters/itkBasicFiltersTests2
ENH: Expanded the test to include some actual calculations so that we can ensure that the new versions of this filter produce the same results.

Testing/Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilterTest
ENH: Expanded the test to include some actual calculations so that we can ensure that the new versions of this filter produce the same results.

Testing/Code/BasicFilters/itkDisplacementFieldJacobianDeterminantFilterTest
ENH: Filled in the stub code to verify that the correct results were being calculated.

Testing/Code/BasicFilters/itkHausdorffDistanceImageFilterTest
ENH: Added average Hausdorff distance calculation, sometimes called the modified Hausdorff distance

Testing/Code/BasicFilters/itkWarpVectorImageFilterTest
ENH: Expanded the test to include some actual calculations so that we can ensure that the new versions of this filter produce the same results.

Testing/Code/Common/CMakeLists.txt
ENH: Adding explicit test for the itkTriangleCell class.
ENH: Program to print system information using kwsys::SystemInformation.
ENH: Added a unit test for TimeStamps (part of patch to bug #6599

Testing/Code/Common/itkAffineTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkBSplineDeformableTransformTest2
COMP: missing typename warnings.

Testing/Code/Common/itkCenteredAffineTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkCenteredEuler3DTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkCenteredRigid2DTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkCenteredTransformInitializerTest

Testing/Code/Common/itkCommonHeaderTest
COMP: Fixing the signature of main() as indicated by gcc 4.3

Testing/Code/Common/itkCommonTests

Testing/Code/Common/itkCommonTests2
ENH: Adding explicit test for the itkTriangleCell class.

Testing/Code/Common/itkEuler2DTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkFactoryTestLib
COMP: Moved static for factory outside of constructor. cygwin was crashing on exit.

Testing/Code/Common/itkFixedArrayTest2
BUG: On some compilers everything was optimized away which leaded to irrelevant timings
ENH: Improving the criteria for test failure.
COMP: Adding #include for <memory> in order to get declaration of memset().
ENH: Add computation of performance ratio.

Testing/Code/Common/itkImageIteratorTest
BUG: uninitialized memory read. Test image was not initialized.
ENH: Adding more methods to increase code coverage of this class.

Testing/Code/Common/itkImageRegionIteratorTest

Testing/Code/Common/itkLinearInterpolateImageFunctionTest
ENH: fix for bug 0004644, default coordreptype is now more consistent over the toolkit

Testing/Code/Common/itkRigid2DTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkRigid3DTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkSimilarity2DTransformTest
COMP: Configuring the GetInverse() method using the LEGACY macro and symbols.

Testing/Code/Common/itkSmartPointerTest
COMP: Adding #includes required by Gcc 4.3.

Testing/Code/Common/itkSystemInformation
ENH: Program to print system information using kwsys::SystemInformation.

Testing/Code/Common/itkSystemInformationTest
COMP: Adding #includes required by Gcc 4.3.

Testing/Code/Common/itkTimeStampTest
ENH: Added a unit test for TimeStamps (part of patch to bug #6599

Testing/Code/Common/itkTriangleCellTest
ENH: Adding two more points in unique regions of the barycentric coordinates.
ENH: Fixing the helper Triangle class used to expose EvaluatePosition() to the public API.
ENH: Adding explicit test for the itkTriangleCell class.

Testing/Code/IO/CMakeLists.txt
ENH: Added new test for stream reader
ENH: Test for .img.gz analyze files
BUG: resolve 0916; depricate filename parsing and add test

Testing/Code/IO/itkAnalyzeImageIOTest
BUG: fixed crash in AnalyzeImageIO for 2D images
ENH: Test for .img.gz analyze files

Testing/Code/IO/itkBrains2MaskImageIOTest

Testing/Code/IO/itkIOCommonTest
COMP: gcc4.3 include <cstring> for strcpy.
BUG: resolve 0916; depricate filename parsing and add test

Testing/Code/IO/itkIOHeaderTest
COMP: Fixing the signature of the main() method. This is signaled by gcc 4.3.

Testing/Code/IO/itkIOTests
ENH: Adding a test for the supported filename extensions in the ImageIO classes.
BUG: resolve 0916; depricate filename parsing and add test

Testing/Code/IO/itkImageFileWriterTest
COMP: tracking down some platform specific errors.

Testing/Code/IO/itkImageIOBaseTest
COMP: fix compiler warning: passing double as int
BUG: fixing bug 4560; add exceptions when indices are out of range; add tests

Testing/Code/IO/itkImageIOFileNameExtensionsTests
ENH: Adding a test for the supported filename extensions in the ImageIO classes.

Testing/Code/IO/itkRawImageIOTest2
STYLE: fix bad variable name

Testing/Code/IO/testMetaBlob
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaGroup
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaImage
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaLandmark
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaLine
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaMe
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaScene
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaSurface
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaTube
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/IO/testMetaUtils
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/Numerics/itkAmoebaOptimizerTest
COMP: Adding #include for cstdlib, required by gcc 4.3 for the EXIT_SUCCESS and EXIT_FAILURE macros.

Testing/Code/Numerics/itkCompositeValleyFunctionTest
COMP: Adding #include for cstdlib, required by gcc 4.3 for the EXIT_SUCCESS and EXIT_FAILURE macros.

Testing/Code/Numerics/itkConjugateGradientOptimizerTest
COMP: Adding #include for cstdlib, required by gcc 4.3 for the EXIT_SUCCESS and EXIT_FAILURE macros.

Testing/Code/Numerics/itkCumulativeGaussianOptimizerTest
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/Numerics/itkExhaustiveOptimizerTest
COMP: warning, unused variable.
COMP: Fix GCC 4.2.3 (-Wall) warnings.

Testing/Code/Numerics/itkFRPROptimizerTest
COMP: Adding #include for <cstdlib> required by Gcc 4.3 for the EXIT_ macros.

Testing/Code/Numerics/itkNumericsHeaderTest

Testing/Code/Numerics/itkPowellOptimizerTest
ENH: Need to change step tolerance to match test tolerence

Testing/Code/Numerics/NeuralNetworks/itkNeuralNetworksHeaderTest
COMP: Fixing the signature of main() as indicated by gcc 4.3

Testing/Code/Numerics/Statistics/CMakeLists.txt
ENH: Adding explicit test for the NthElement algorithm in StatisticsAlgorithms.
ENH: Adding a smaller test with just 10 input points.
ENH: Adding an explicit test for the Statistics::QuickSelect function.
ENH: Adding test cases for multiple values of BucketSize.

Testing/Code/Numerics/Statistics/itkKdTreeBasedKmeansEstimatorTest

Testing/Code/Numerics/Statistics/itkKdTreeTest1
COMP: Removing unused variable. Fixing Borland warnings.
ENH: Making optional the generation of the Graphviz-dot plot of the KdTree.
BUG: Fixing the numbering of argv command line arguments.
BUG: Missing return EXIT_FAILURE when command line argumentas were insufficient.
COMP: Fixing warnings.

Testing/Code/Numerics/Statistics/itkKdTreeTest2
ENH: Removing unused header for the WeightedCentroidKdTreeGenerator.
COMP: Fixing warnings.
ENH: Now checking all the points in the collection.

Testing/Code/Numerics/Statistics/itkListSampleTest
ENH: added more output to track down crash on VS9.

Testing/Code/Numerics/Statistics/itkNthElementTest1
BUG: nth_element missing std:: namespace.

Testing/Code/Numerics/Statistics/itkQuickSelectTest1
BUG: nth_element missing std:: namespace.
ENH: Testing all possible kth entries with calls to QuickSelect.
ENH: Adding an explicit test for the Statistics::QuickSelect function.

Testing/Code/Numerics/Statistics/itkStatisticsAlgorithmTest

Testing/Code/Numerics/Statistics/itkStatisticsHeaderTest
COMP: Fixing signature of main() according to error message from gcc 4.3.

Testing/Code/Numerics/Statistics/itkStatisticsTests
ENH: Adding explicit test for the NthElement algorithm in StatisticsAlgorithms.

Testing/Code/Numerics/Statistics/itkWeightedCentroidKdTreeGeneratorTest1

Testing/Code/Patented/itkPatentedHeaderTest

Testing/Code/Review/CMakeLists.txt
BUG: The FastSymmetricForcesDemonsRegistrationFilterTest was not run by make test
COMP: itkGridForwardWarpImageFilterTest and itkWarpHarmonicEnergyCalculatorTest were not run by make test
ENH: Fine tunning the remaining tests of Diffeomorphic demons.
ENH: Trying to fine tune the test itkDiffeomorphicDemonsRegistrationFilterTest02.
ENH: Fine-tunning the parameters and relaxing the test for the Diffeomorphic Demons implementation.
ENH: Splitting the itkBSplineScatteredDataPointSetToImageFilterTest in three separate tests.
COMP: remove QuadEdgeMeshEulerOperatorsTest from the list of tests to be performed and fixed some warning
ENH: Adding (temporary) expected threshold values to the KappaSigma calculator.
ENH: improved logic for checking joinvertex cases. ENH: new test case for the m_NoPoint problem reported by thomas.
ENH: Adding tests for the Add and Subtract image filters.
ENH: reorder point container to have consecutive IDs before writting a mesh.
BUG: remove class definition from COnformalFlattening class. One file, One class. ENH: Create a conformalFlattening test which uses a QuadEdgeMesh and add it to the test suite.
COMP: Renaming the ITKReview library as ITKTransformIOReview to prevent configuration problems when ITK_USE_TRANSFORM_IO_FACTORIES is OFF.
ENH: Adding specific tests for reading an writing CUB and CUB.gz files.

Testing/Code/Review/itkAddConstantToImageFilterTest
ENH: Adding tests for the Add and Subtract image filters.

Testing/Code/Review/itkAutomaticTopologyQuadEdgeMeshSourceTest
ENH: new cell container design with specific Edge container.

Testing/Code/Review/itkBSplineScatteredDataPointSetToImageFilterTest
ENH: Splitting the itkBSplineScatteredDataPointSetToImageFilterTest in three separate tests.

Testing/Code/Review/itkBSplineScatteredDataPointSetToImageFilterTest2
COMP: disable bogus VS warning about arithmetic overflow.
ENH: Splitting the itkBSplineScatteredDataPointSetToImageFilterTest in three separate tests.

Testing/Code/Review/itkBSplineScatteredDataPointSetToImageFilterTest3
BUG: uninitialized variable introduced in last checkin.
COMP: disable bogus VS warning about arithmetic overflow.
ENH: Splitting the itkBSplineScatteredDataPointSetToImageFilterTest in three separate tests.

Testing/Code/Review/itkBinaryMask3DQuadEdgeMeshSourceTest
ENH: added test for BinaryMask3DMeshSource using QuadEdgeMesh. Worked out of the box by just changing the meshtype definition. Noticeably slower though.

Testing/Code/Review/itkBruker2DSEQImageIOTest

Testing/Code/Review/itkComposeRGBAImageFilterTest

Testing/Code/Review/itkConformalFlatteningMeshFilterTest
ENH: new conformaspherical flattening code from Yi Gao, following work at the NAMIC week.

Testing/Code/Review/itkConformalFlatteningQuadEdgeMeshFilterTest
BUG: remove class definition from COnformalFlattening class. One file, One class. ENH: Create a conformalFlattening test which uses a QuadEdgeMesh and add it to the test suite.

Testing/Code/Review/itkDiffeomorphicDemonsRegistrationFilterTest
BUG: Accidentally committed the version used for debugging (it had a "main").
ENH: Fine-tunning the parameters and relaxing the test for the Diffeomorphic Demons implementation.

Testing/Code/Review/itkDiffeomorphicDemonsRegistrationFilterTest2

Testing/Code/Review/itkDivideByConstantImageFilterTest
BUG: The expected value should be computed by division.

Testing/Code/Review/itkExponentialDeformationFieldImageFilterTest

Testing/Code/Review/itkFFTComplexToComplexImageFilterTest01
COMP: The internal name of the function name didn't match the filename.

Testing/Code/Review/itkFFTComplexToComplexImageFilterTest02
COMP: The internal name of the function name didn't match the filename.

Testing/Code/Review/itkFastSymmetricForcesDemonsRegistrationFilterTest
ENH: set the default value of the interpolated imageequal to the background value

Testing/Code/Review/itkGridForwardWarpImageFilterTest

Testing/Code/Review/itkImageReadComplexWriteMagnitudeAndPhaseTest

Testing/Code/Review/itkImageReadMagnitudeAndPhaseWriteComplexTest

Testing/Code/Review/itkImageReadRealAndImaginaryWriteComplexTest

Testing/Code/Review/itkKappaSigmaThresholdImageCalculatorTest

Testing/Code/Review/itkKappaSigmaThresholdImageFilterTest

Testing/Code/Review/itkMultiplyByConstantImageFilterTest

Testing/Code/Review/itkPhilipsRECImageIOTest

Testing/Code/Review/itkQuadEdgeMeshCountingCellsTest

Testing/Code/Review/itkQuadEdgeMeshDeletePointAndReorderIDsTest
ENH: reorder point container to have consecutive IDs before writting a mesh.

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorCreateCenterVertexTest
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorDeleteCenterVertexTest
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorFlipTest
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorJoinFacetTest
COMP: remove QuadEdgeMeshEulerOperatorsTest from the list of tests to be performed and fixed some warning

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorJoinVertexTest
COMP: remove QuadEdgeMeshEulerOperatorsTest from the list of tests to be performed and fixed some warning

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorSplitEdgeTest
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorSplitFaceTest
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorSplitVertexTest
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorsTest
ENH: improved logic for checking joinvertex cases. ENH: new test case for the m_NoPoint problem reported by thomas.
COMP: shadowed variable warning for pts2.

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorsTestHelper
STYLE: split euler operator tests into several ones

Testing/Code/Review/itkQuadEdgeMeshPointTest1
BUG: Constructor taking a Superclass (itk::Point) as argument was missing.

Testing/Code/Review/itkQuadEdgeMeshTest1
ENH: new cell container design with specific Edge container.

Testing/Code/Review/itkQuadEdgeMeshTest2
ENH: new cell container design with specific Edge container.

Testing/Code/Review/itkQuadEdgem_NoPointTest
ENH: an actual test for the m_NoPoint problem reported by thomas.

Testing/Code/Review/itkReviewHeaderTest

Testing/Code/Review/itkReviewPrintTest
ENH: meshtype shoul dnot be hardcoded. Modified the class to be compliant to a MeshToMesh filter design.

Testing/Code/Review/itkReviewTests
ENH: Splitting the itkBSplineScatteredDataPointSetToImageFilterTest in three separate tests.
COMP: remove QuadEdgeMeshEulerOperatorsTest from the list of tests to be performed and fixed some warning
ENH: improved logic for checking joinvertex cases. ENH: new test case for the m_NoPoint problem reported by thomas.
ENH: Adding tests for the Add and Subtract image filters.
ENH: reorder point container to have consecutive IDs before writting a mesh.
BUG: remove class definition from COnformalFlattening class. One file, One class. ENH: Create a conformalFlattening test which uses a QuadEdgeMesh and add it to the test suite.

Testing/Code/Review/itkSliceBySliceImageFilterTest
ENH: Exercising the PrintSelf() method.

Testing/Code/Review/itkSubtractConstantFromImageFilterTest
ENH: Adding tests for the Add and Subtract image filters.

Testing/Code/Review/itkTransformFileReaderWriterTest

Testing/Code/Review/itkTransformToDeformationFieldSourceTest
COMP: Fixing the signature of the test. Replacing char ** argv with char * argv [].

Testing/Code/Review/itkVTKPolyDataReaderQuadEdgeMeshTest
ENH: ZipFunction now handle the case where two QEdges would be joined into an antenna by removing the two QEdges altogether. the euler op JoinVertex now handle the case where the candidate edge belongs to an isolated triangle. It discard the triangle and associated edge for the time being, but we could choose to keep it if we do not want to change the number of component of the mesh, i.e. the euler constant. It also handle more nicely tetrahedron and separable cycles.

Testing/Code/Review/itkVectorLinearInterpolateNearestNeighborExtrapolateImageFunctionTest
COMP: Fixing the name of the test function.

Testing/Code/Review/itkVoxBoCUBImageIOTest

Testing/Code/Review/itkWarpHarmonicEnergyCalculatorTest
ENH: On the simple test for WarpHarmonicEnergyCalculator, check that the result is zero

Testing/Code/Review/itkWarpJacobianDeterminantFilterTest
ENH: Intermediate commit while resolving the itkDisplacementFieldJacobianDeterminant and itkDeformationFieldJacobianDeterminant into two well documented and consistant classes.

Testing/Code/SpatialObject/CMakeLists.txt
BUG: fixed bug 0005359 "PolygonSpatialObject ClosestPoint() returns incorrect value"; added test

Testing/Code/SpatialObject/itkPolygonSpatialObjectTest
BUG: fixed bug 0005359 "PolygonSpatialObject ClosestPoint() returns incorrect value"; added test

Testing/Code/SpatialObject/itkSpatialObjectHeaderTest
COMP: Fixing signature of main() function. This was signaled by gcc 4.3.

Testing/Code/SpatialObject/itkSpatialObjectTests2
BUG: fixed bug 0005359 "PolygonSpatialObject ClosestPoint() returns incorrect value"; added test

Testing/Data/Baseline/Algorithms/VectorThresholdSegmentationLevelSetImageFilterTest.1.png
ENH: new Windows VS baselines after change of default coordtype to double.

Testing/Data/Baseline/IO/RGBTestImageCCITTFax3.mha
ENH: Baseline images for TIFF fax tests.

Testing/Data/Baseline/IO/RGBTestImageCCITTFax4.mha
ENH: Baseline images for TIFF fax tests.

Testing/Data/Baseline/Registration/ImageRegistration14Test.1.png

Testing/Data/Baseline/Registration/ImageRegistration14Test.png
view.php?id=4547

Testing/Data/Baseline/Registration/MultiResImageRegistration2Test.2.png

Testing/Data/Baseline/Segmentation/ThresholdSegmentationLevelSetWhiteMatterTest.1.png
ENH: new Windows VS baselines after change of default coordtype to double.

Testing/Data/Input/BSplineScatteredApproximationDataPointsInput.txt

Testing/Data/Input/HeadMRVolume.cub
BUG: test data input should be in the repository and not generated by other tests.

Testing/Data/Input/HeadMRVolume1.cub
BUG: test data input should be in the repository and not generated by other tests.

Testing/Data/Input/HeadMRVolume1.cub.gz
BUG: test data input should be in the repository and not generated by other tests.

Testing/Data/Input/HeadMRVolume2.cub
BUG: test data input should be in the repository and not generated by other tests.

Testing/Data/Input/HeadMRVolume2.cub.gz
BUG: test data input should be in the repository and not generated by other tests.

Testing/Data/Input/IntensityRamp64.png

Testing/Data/Input/LittleEndianZ.hdr
COMP: Added test file for compressed analyze

Testing/Data/Input/LittleEndianZ.img.gz
COMP: Added test file for compressed analyze

Testing/Data/Input/Number1inText.png

Testing/Data/Input/Number2inText.png

Testing/Data/Input/Number3inText.png

Testing/Data/Input/T1_MEASUREMENT_4_1.PAR

Testing/Data/Input/T1_MEASUREMENT_4_1.REC

Testing/Data/Input/itkAffineTransform00.txt
ENH: Adding standard transforms for testing TransformFileReader and TransformFileWriter.

Testing/Data/Input/itkAffineTransform01.txt
ENH: Adding standard transforms for testing TransformFileReader and TransformFileWriter.

Testing/Data/Input/parametersBSpline.txt

Testing/Data/Input/pointsForKdTree.txt

Testing/Data/Input/pointsForKdTree2.txt
ENH: Adding one level more of branching in the fractal structure of the 2D point distribution.

Testing/Data/Input/pointsForQuickSelect1.txt
ENH: Removing spaces.

Testing/Data/Input/pointsForQuickSelect2.txt
ENH: In quest for the minimal test...

Testing/Data/Input/pointsForQuickSelect3.txt

Testing/Data/Input/DCB120604.t61/AdjStatePerStudy

Testing/Data/Input/DCB120604.t61/subject

Testing/Data/Input/DCB120604.t61/11/acqp

Testing/Data/Input/DCB120604.t61/11/imnd

Testing/Data/Input/DCB120604.t61/11/pulseprogram

Testing/Data/Input/DCB120604.t61/11/spnam0

Testing/Data/Input/DCB120604.t61/11/spnam1

Testing/Data/Input/DCB120604.t61/11/pdata/1/2dseq

Testing/Data/Input/DCB120604.t61/11/pdata/1/d3pr

Testing/Data/Input/DCB120604.t61/11/pdata/1/meta

Testing/Data/Input/DCB120604.t61/11/pdata/1/procs

Testing/Data/Input/DCB120604.t61/11/pdata/1/reco

Testing/Data/Input/DCB120604.t61/11/pdata/1/roi

Utilities/CMakeLists.txt
ENH: fix some Mac build, kwsys is required to build metaio
ENH: Uses new directory structure in KWPublic

Utilities/README.itklibxml2
STYLE: typo

Utilities/DICOMParser/DICOMAppHelper
porting_to.html for a more detailed explanation.

Utilities/DICOMParser/DICOMBuffer
porting_to.html for a more detailed explanation.

Utilities/DICOMParser/DICOMParser
BUG: applied fix from VTK where a stray semicolon was causing the body of a loop to execute only once

Utilities/DICOMParser/DICOMParser
porting_to.html for a more detailed explanation.

Utilities/DICOMParser/DICOMSource
porting_to.html for a more detailed explanation.

Utilities/Dart/BuildHeaderTest.tcl

Utilities/Doxygen/CMakeLists.txt

Utilities/Doxygen/doxygen.config.in
BUG: The location of the perl script for itkdoxygen.pl was not updated.

Utilities/MetaIO/.svnrev
ENH: subversion revision 451 commited to CVS
ENH: subversion revision 432 commited to CVS
ENH: subversion revision 371 commited to CVS
ENH: subversion revision 198 commited to CVS
ENH: subversion revision 195 commited to CVS

Utilities/MetaIO/CMakeLists.txt

Utilities/MetaIO/metaCommand

Utilities/MetaIO/metaContour

Utilities/MetaIO/metaDTITube

Utilities/MetaIO/metaImage

Utilities/MetaIO/metaMe

Utilities/MetaIO/metaOutput

Utilities/MetaIO/metaScene

Utilities/MetaIO/metaUtils

Utilities/NrrdIO/754
COMP: wrong #ifdef for Visual Studio compilers.

Utilities/NrrdIO/CMakeLists.txt
COMP: suppress strict aliasing warning.

Utilities/NrrdIO/axis

Utilities/NrrdIO/biffbiff
COMP: warning, isprint and isspace take int args.

Utilities/NrrdIO/encodingAscii

Utilities/NrrdIO/encodingGzip

Utilities/NrrdIO/encodingHex

Utilities/NrrdIO/gzio

Utilities/NrrdIO/methodsNrrd
COMP: size_t needs a "z" length modifier for sprintf.

Utilities/NrrdIO/parseNrrd

Utilities/NrrdIO/read
COMP: Addressing warnings on 64bits Windows regarding conversions between size_t and int.

Utilities/NrrdIO/reorder

Utilities/NrrdIO/simple

Utilities/NrrdIO/string
COMP: warning, isprint and isspace take int args.

Utilities/NrrdIO/write
COMP: Addressing warnings on 64bits Windows regarding conversions between size_t and int.

Utilities/expat/xmltok_impl
COMP: redefinition of #define'ed symbol.

Utilities/gdcm/CMakeLists.txt

ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/gdcmConfigure.h.in

Utilities/gdcm/CMake/FindUUID.cmake

Utilities/gdcm/Dicts/CMakeLists.txt
STYLE: sync with Creatis

Utilities/gdcm/Dicts/dicomVR.d
BUG: fix issue with VR=OF in file

Utilities/gdcm/src/CMakeLists.txt
STYLE: sync with Creatis
ENH: Backport from gdcm 1.2.4 the new improved UUID generator

Utilities/gdcm/src/gdcmArgMgr
ENH: Backport fix from gdcm CVS HEAD. Thanks to Sean McBride for report

Utilities/gdcm/src/gdcmCommon
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmDebug
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmDicomDir

Utilities/gdcm/src/gdcmDocument
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmFile
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmFileHelper
COMP: shadowed variable warning.
ENH: when creating image from ex-nihilo make sure meta header is consistand with dataset
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmJPEGFragmentsInfo
ENH: prevent segfault. The last else should not always call the jpeg decompressor when the image is NOT jpeg

Utilities/gdcm/src/gdcmJpeg2000
STYLE: sync with Creatis
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmPixelReadConvert
STYLE: sync with Creatis
ENH: prevent segfault. The last else should not always call the jpeg decompressor when the image is NOT jpeg

Utilities/gdcm/src/gdcmPixelWriteConvert
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmSerieHelper
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/gdcm/src/gdcmUtil
ENH: When a UUID lib is found disable the old path, and use the new approach to generate UUIDs
ENH: Backport from gdcm 1.2.4 the new improved UUID generator

Utilities/gdcm/src/gdcmUtil
ENH: When a UUID lib is found disable the old path, and use the new approach to generate UUIDs
ENH: Backport more bug fixes from official gdcm 1.2.4 (sync in progress)

Utilities/itkpng/pngpread

Utilities/itkpng/pngread

Utilities/itkpng/pngrutil

Utilities/itkpng/pngset

Utilities/itkpng/pngwio

Utilities/itkpng/pngwrite

Utilities/itkpng/pngwutil

Utilities/itktiff/CMakeLists.txt
COMP: suppress strict aliasing warning.

Utilities/itktiff/tif_config.h.in
COMP: use include guards to prevent multiple definitions.

Utilities/itktiff/tif_dirread
COMP: possible use of unitialized variable.

Utilities/kwsys/CMakeLists.txt

Utilities/kwsys/CPU.h.in

Utilities/kwsys/DynamicLoader

Utilities/kwsys/ProcessUNIX
ENH: all ctype function have the same issue: char can be signed or unsigned, since isspace only deal with >=0 value (except EOF) one has to first cast it to unsigned char

Utilities/kwsys/ProcessWin32
COMP: sprintf warnings. DWORD should use %ld rather than %d. Also, const char *p, a shadowed variable warning.

Utilities/kwsys/RegularExpression
COMP: remove warning and check for assignment to itself in operator=
ENH: Add assignment operator to KWSys RegularExpression.

Utilities/kwsys/RegularExpression.hxx.in
ENH: Add assignment operator to KWSys RegularExpression.

Utilities/kwsys/System
BUG: Fix escaping of more characters on Windows shells.

Utilities/kwsys/SystemInformation
ENH: fix crash on dash17 linux where the parsing of the proc file must not have worked right
BUG:cpuinfo format are different between Linux and Cygwin. Cygwin does not have physical id tag or cpu cores tag.
BUG:Fixed NumberOfLogicalCPU, NumberOfPhysicalCPU and LogicalProcessorsPerPhysical under Linux. Some part was just wrong. Some other part missed to take the multicore value into account.
BUG: really fix build on vs6
ENH: use GlobalMemoryStatusEx as it is able to report more than 2gigs
ENH: remove odd chars from file

Utilities/kwsys/SystemTools
COMP: sprintf warnings. DWORD should use %ld rather than %d. Also, const char *p, a shadowed variable warning.

Utilities/kwsys/SystemTools.hxx.in

Utilities/kwsys/Terminal

Utilities/kwsys/kwsysDateStamp.cmake
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
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STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp

Utilities/nifti/niftilib/nifti1_io
COMP: warning, isprint and isspace take int args.

Utilities/nifti/znzlib/znzlib

Utilities/openjpeg/CMakeLists.txt
COMP: Fix comp on Proximal Win32-bcc5.5-Static

Utilities/vxl/core/testlib/testlib_main
STYLE: Fix inclusion of cstdlib to be vcl-ified. The inclusion of this header was already done in vxl upstream.

Utilities/vxl/core/vnl/vnl_gamma
vnl_gamma.cxx about constant controlling expression in assert.

Utilities/vxl/core/vnl/vnl_matlab_header
COMP: Accidently commited local changes. Rolling back to proper version.

Utilities/vxl/core/vnl/vnl_numeric_traits
ENH: Adding traits for size_t, needed in Windows 64 bits.

Utilities/vxl/core/vnl/vnl_sse
BUG: fixed 7214, allowing Mac OS X Universal Binary builds to succeed even if VNL_CONFIG_ENABLE_SSE2 is ON

Utilities/vxl/core/vnl/algo/vnl_lbfgsb
ENH: Always return the best known function input from vnl_lbfgsb even when an error occurs. Patch from Tom Vercauteren on ITK users list.

Utilities/vxl/core/vnl/tests/test_vector
COMP: tracking down test failure for Intel ICC 10.0 compiler.
COMP: added extra output to try and track down a failing test in INTEL icc 10.0.

Utilities/vxl/v3p/netlib/CMakeLists.txt

Utilities/vxl/v3p/netlib/opt/lbfgsb
COMP: Fixing warning for uninitialized variable cpu1.

Wrapping/CSwig/CMakeLists.txt

Wrapping/ExplicitITK/Modules/Common/wrap_itkImage.cmake
COMP: drop duplicated instantiations.

Wrapping/ExplicitITK/Modules/Common/wrap_itkImageFunction.cmake

Wrapping/ExplicitITK/Modules/Common/wrap_itkLinearInterpolateImageFunction.cmake

Wrapping/ExplicitITK/Modules/Common/wrap_itkVectorLinearInterpolateImageFunction.cmake

Wrapping/ExplicitITK/Modules/Common/wrap_itkZeroFluxNeumannBoundaryCondition.cmake
COMP: drop duplicated instantiations.

Wrapping/WrapITK/ConfigureWrapping.cmake
ENH: additional macros to let external projects build with both stable and unstable wrapitk

Wrapping/WrapITK/CreateWrapperLibrary.cmake
ENH: additional macros to let external projects build with both stable and unstable wrapitk

Wrapping/WrapITK/WrapITKTypes.cmake
ENH: additional macros to let external projects build with both stable and unstable wrapitk

Wrapping/WrapITK/Java/Tests/CMakeLists.txt
COMP: Use 'ALL' to force the build of the java tests.

Wrapping/WrapITK/Modules/Base/wrap_itkNumericTraits.cmake
ENH: Adding the new file itkNumericTraitsFixedArrayPixel.h.

Wrapping/WrapITK/Modules/Interpolators/wrap_itkWindowedSincInterpolateImageFunction.cmake
ENH: Added the Windowed SincInterpolateImageFunction to the standard wrapping.

Wrapping/WrapITK/Modules/Review/wrap_itkBinaryProjectionImageFilter.cmake
ENH: keep only integer types - that's a binary filter.

Wrapping/WrapITK/Modules/Review/wrap_itkBinaryThresholdProjectionImageFilter.cmake
COMP: Reduce the number of wrapped types to avoid the hierarchy gaps warnings

Wrapping/WrapITK/Modules/Review/wrap_itkKappaSigmaThresholdImageFilter.cmake
ENH: wrap KappaSigmaThresholdImageFilter and SliceBySliceImageFilter

Wrapping/WrapITK/Modules/Review/wrap_itkSliceBySliceImageFilter.cmake
ENH: wrap KappaSigmaThresholdImageFilter and SliceBySliceImageFilter

Wrapping/WrapITK/Modules/SimpleFilters/Attic/wrap_itkInterpolateImageFilter.cmake
COMP: Remove InterpolateImageFilter to avoid cableswig warnings.

Wrapping/WrapITK/images/FFTImageFilterImaginary.png
BUG: Fix PythonFFTImageFilter test.

Wrapping/WrapITK/images/Attic/capture1.png
ENH: Removing large image that is not needed for testing.

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