ITK/Release 4.4 Changed From Previous
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Changes in ITK from v4.3.0 to v4.4.0 from the Git log:
Ali Ghayoor (7):
ENH: Get the internal transforms of SyN registration filter
COMP: Fix all valid cppcheck warnings in "Module/Filtering" directory
COMP: Fix all valid cppcheck warnings in "Module/Core" directory
COMP: Fix all valid cppcheck warnings in "Module/Segmentation" directory
COMP: Fix all valid cppcheck warnings in "Module/Registration" directory
COMP: Fix all valid cppcheck warnings in ITK (last patch)
COMP: Fix all valid cppcheck warnings in "ITK/Module" directory
Arnaud Gelas (4):
PERF: improve performance of couple of methods of itk::QuadEdgeMesh
PERF: couple of speed up improvements for QuadEdgeMesh processing
PERF: avoid doing GetPoint and SetPoint for the same point
ENH: Simplify template parameters in itk::PointsLocator
Bill Lorensen (20):
ENH: Prevent duplicate loading of dynamic libraries
COMP: Fix compile error in PhilipsRECImageIO
COMP: Fix compile error in PhilipsRECImageIO
BUG: Memory leak after failed RegisterFactory
BUG: Warn on directories
ENH: Refactor DoubleToString into NumberToString
DOC: Escape hash in comment
STYLE: Apply kwstyle to Modules/Core tests
STYLE: Apply kwstyle to Modules/Filtering tests
STYLE: Apply kwstyle to Modules/Segmentation tests
STYLE: Apply kwstyle to Modules/IO tests
STYLE: Apply kwstyle to Modules/Numerics tests
STYLE: Apply kwstyle to Modules/Registration tests
STYLE: Apply kwstyle to some tests
BUG: Memory leak after failed RegisterFactory
COMP: Remove copy_n wrapper for standard std::copy
COMP: Make the test stable by removing random source
COMP: More baselines
COMP: Another baseline
COMP: Missing return error after exception
Brad King (14):
BUG: ExternalData: Do not match directory names when resolving DATA{}
STYLE: ExternalData: Cleanup stray TODO and typo in comments
STYLE: ExternalData: Remove unused private interface
ENH: ExternalData: Improve series matching using an explicit syntax
ENH: ExternalData: Allow ()-groups in series match regex
ENH: ExternalData: Allow DATA{} syntax to reference directories
ENH: Configure new ExternalData series parsing for ITK baselines
BUG: ExternalData: Collapse ../ components in DATA{} paths
BUG: Fix "git gerrit-push" for content links with spaces
STYLE: Add detail to the vxl update instructions
STYLE: Add more detail to the vxl update instructions
ENH: ExternalData: Partly generalize hash algo/ext handling
ENH: ExternalData: Attach download rules to content links in IDEs
ENH: ExternalData: Preserve escaped semicolons during argument expansion
Bradley Lowekamp (78):
STYLE: Use ITK_ prefix for FFTW cmake variables and defines
BUG: Change default boundary condition to ZeroFlux
ENH: wrapping itkImageSeriesWriter
BUG: incorrect CMake variable for system jpeg include
DOC: Correct description of Bitwise binary filters
BUG: incorrect CMake variable for system jpeg include
COMP: GetTimeVaryingVelocityField methods did not compile
ENH: Creating templateless region splitter classes
ENH: Adding image region splitter for separable filtering
PERF: Do not spawn threads that will not be used.
ENH: ImageIO's now use ImageRegionSplitter base
COMP: Specify export for Specialized Array output operators
ENH: making old ImageRegionSplitter compatible with new splitter
BUG: initials Direction IVAR
STYLE: never a space before;
COMP: Address unused parameter warning in GPU code
BUG: Do not create static initialized ITK objects
ENH: Converted Multidimensional splitter to new base class
ENH: moving old ImageRegionSplitter to Deprecated Module
BUG: Only thread 0 should report progress.
PERF: Use std::fill for image filling
BUG: Only thread 0 should report progress in LabelMapFilters
COMP: Adding missing header
BUG: Using CMake variable in external builds with autoconf environment
BUG: initialize InverseCovariance size with degenerate matrix
ENH: Adding numeric_traits specializations for "long long"
ENH: instantiate vnl types with "long long" on all platforms
Revert "ENH: Use named inputs in BinaryReconstruction filters."
BUG: initialize InverseCovariance size with degenerate matrix
BUG: Using CMake variable in external builds with autoconf environment
COMP: Address unused parameter warning in GPU code
BUG: Only thread 0 should report progress in LabelMapFilters
BUG: Only thread 0 should report progress.
COMP: Adding missing header
ENH: Adding support for instantiating long long pixel types
BUG: VerifyPreconditions checks required named inputs
PERF: Adding performance oriented ScanlineIterator
COMP: Remove copy_n wrapper for standard std::copy
COMP: Missing ProgressReporter header
COMP: Suppress linker warning from fftw external project
COMP: Add missing ImageRegionIterator header in test
BUG: Don't allocate empty names in Get I/O Names methods
COMP: Make GPUFunctorBase destructor virtual
PERF: Changing filters to use ImageScanlineInterator
COMP: GCC_XML external project does not use BUILD_EXAMPLES
BUG: Scanline iterator in STAPLE filter not advanced to next line
PERF: Use ImageScanlineIterator in ImageAlgorithm::Copy
PERF: Use iterators into name map for index inputs
ENH: index can be associated with required input
PERF: Add global variable of index names in ProcessObject
COMP: fix unused result warning in ProcessObject
ENH: Remove names inputs specialized comparison
DOC: Updated input methods doxygen
PERF: Use ImageAlgorithm::Copy in JoinSeries filter
PERF: Change default index i/o prefix to just "_"
PERF: Use ImageAlgorithm::Copy in CastImageFilter
COMP: Fix failing implicit conversion from NULL
BUG: restore gnu aligned attribute
PERF: ImageAlgorithm::copy to use std::copy for conversion
PERF: Store indexed outputs in array for constant time access
COMP: GCC_XML compilation error with type_traits
BUG: Add unsigned int concept check to LabelVoting filter
COMP: Disable conversion warning for std::copy in ImageAlgorithm
BUG: Use correct types for TIFF Tags and buff math
BUG: Use local var for TIFF va_list parameter
BUG: Use correct bytes for BigEndian magic number
COMP: Fix int to char narrowing error and warning
COMP: Fix int to char narrowing error and warning
COMP: Fix scanf conversion specification to %u
COMP: Fix scanf conversion specification for id types
BUG: Remove extraneous print statement in tiffio
BUG: Incorrect va_arg type used in TIFF and LSM
BUG: JPEG2000 bool type in C is now unsigned char
BUG: add a test to demonstrate ThreadedIteratorPartitioner bug
BUG: Fix written other magic number in FreeSurferBinaryMeshIO
COMP: Fix assert in LSM, = in err of ==
BUG: IteratorPartitioner extra thread don't advance
BUG: C++ bool is 4 bytes on osx ppc
Brian Helba (11):
STYLE: Ensure documentation \author tags are parsed
STYLE: Remove unnecessary overloads in favor of implicit conversion
PERF: Replace deep copy with const const signature
ENH: Re-enable LoadPrivateTags option in GDCMImageIO
STYLE: Slightly refactor ImageFileWriter::Write to simplify logic
ENH: Always enable Get*FromTag methods in GDCMImageIO
DOC: Fix misspelling in MorphologyImageFilter
DOC: Fix misspelling in ObjectMorphologyImageFilter
STYLE: Remove unnecessary function call in GDCMImageIO
STYLE: Remove calls to deprecated functionality from DICOM Examples / Tests
ENH: Allow Get*FromTag to accept uppercase hex
Cory Quammen (1):
COMP: Bumped up minimum required CMake version
Cyrille Faucheux (2):
ENH: allow the ClampImageFilter to use user-defined bounds (#3016).
ENH: Move the ClampImageFilter to the ImageIntensity module (#3016).
David Cole (4):
BUG: Avoid using def file when BUILD_SHARED_LIBS is off
BUG: Do not undefine _WIN32_WINNT
BUG: Avoid using def file when BUILD_SHARED_LIBS is off
BUG: Do not undefine _WIN32_WINNT
David Fuentes (2):
ENH: Allow block matching on diff size images
ENH: wrapping itkMaskFeaturePointSelectionFilter itkBlockMatchingImageFilter
Dirk Padfield (6):
BUG: CSVFileReader was reading all values as NaN
DOC: Made AnisotropicDiffusion documentation consistent with code
ENH: Enable MetaIO to read filenames with spaces using regex
BUG: CSVFileReader was reading all values as NaN
ENH: Added m_RequiredFractionOfOverlappingPixels to MaskedFFTNCC
BUG: SignedMaurerDistanceMap in 4D
Google double-conversion Maintainers (1):
Google double-conversion (reduced)
Hans Johnson (21):
COMP: Remove unnecessary BORLAND code
COMP: Make type conversions explicit/consistent
PERF: Optimize loop index computations
COMP: Remove unnecessary BORLAND code
COMP: Incomplete variable name change.
COMP: Incorrect warning presented for cppcheck
STYLE: The FFTW libs should be co-located with ITK
COMP: Fix robustness of DCMTK internal builds
ENH: Get function accessible from const objects
COMP: Missing patch for ITK_FUTURE_LEGACY_REMOVE
STYLE: Reduce redundant code identified by cpd
BUG: Return a modifiable object or provide const
STYLE: Improve SoftwareGuide documentation
COMP: Type mis-match for comparison operator
STYLE: Enforce using ITK macros when available
COMP: Type mis-match for comparison operator
BUG: ITK_FUTURE_LEGACY_REMOVE must cmake configured
BUG: Expose BSplineInterpolateImageFunction test
COMP: Linkage ITK_ABI_EXPORT to ITKCommon_EXPORT
BUG: itk_tiff.h should not be in itkTIFFImageIO.h
DOC: Fix line length issues for the SoftwareGuide
Ho Cheung (7):
BUG: GradientVectorFlow should calculate timestep based on image dimension
STYLE: GradientVectorFlow - Add const correctness
STYLE: GradientVectorFlow
PERF: GradientVectorFlow - Remove redundant initializations
BUG: itkPolyLineParametricPath infinite loop for degenerate paths
BUG: Fix ITK Path test failures
BUG: ITK unable to detect number of threads under Unix in recent glibc.
ITK Migration V4 (4):
DOC: Modify ContourMeanDistanceImageFilter comments.
DOC: Modify MattesMutualInformationImageToImageMetric comments.
DOC: Modify MaskImageFilter comments.
DOC: Modify BSplineTransformInitializer comments.
Jan Margeta (1):
COMP: Added missing header <functional> in itkAnchorCloseImageFilter.h
Julien Finet (2):
ENH: Add unit test to itkThresholdImageFilterTest
ENH: Add MaskingValue to MaskImageFilter
Julien Malik (2):
BUG: Remove itkLoad definition in JPEG2000ImageIOFactory
ENH: Add missing NumericTraits for complex
Julien Michel (2):
BUG: Fix InverseDisplacementFieldImageFilter bug
BUG: Fix InverseDisplacementFieldImageFilter bug
Kent Williams (21):
COMP: Turn on -fpic in options for DCMTK External Project
BUG: using InputPixelType to hold label count can overflow.
COMP: Update DCMTK version to incorporate new fixes.
COMP: Use portable method to find source dir & find DCMTK headers
COMP: Start using ITKConsortium github to retrieve DCMTK.
BUG: Regressions with respect to building DCMTK
COMP: Added patch from Dirk Padfield
ENH: use find_package(DCMTK NO_MODULE)
ENH: Add double-conversion library for precise Float output
COMP: replace in-line access methods with itk Macros
COMP: The install path for DoubleConversion lib was wrong.
COMP: removed warnings on Windows due to generic vs excp obj throw.
COMP: check for this == &rhs as much as possible.
COMP: Replace memcpy with std::copy in ImportImageContainer.
COMP: Replace memcpy calls with std::copy
COMP: Further changes to the use of std::copy_n
COMP: Add preprocessor symbols to double-conversion for OS X PPC
COMP: Add DoubleConversion merge from upstream documentation
BUG: Return of NaN by DiffusionTensor3D::GetFractionalAnisotropy
BUG: Dicom method for Dir Cosines made non-orthogonal directions
COMP: Install openjpgDllConfig.h
Kris Zygmunt (1):
PERF: Provide better default config for patch-based denoiser
Luis Ibanez (1):
ENH: Maurer for Danielsson in Surface Distance.
Manuel Grizonnet (4):
BUG: Inconsistency detected by ld.so due to static const string
BUG: Inconsistency detected by ld.so due to static const string
BUG: Inconsistency detected by ld.so due to static const string
BUG: Inconsistency detected by ld.so due to static const string
Marco Feuerstein (1):
ENH: JPEG IO now writes and reads spacing, similar to the TIFF IO (ITK-3023)
Marius Staring (3):
ENH: expose parameter in Bilateral filter
PERF: Replace fill and copy with std alternatives
BUG: B-spline interpolator should use direction
Mark Hiner (1):
ENH: Add SCIFIOImageIO.
Matthew McCormick (47):
COMP: Fix wrapping configuration warnings about itkMeshBase, etc.
COMP: Fix HDF5 unused function for long long on Unix.
ENH: Bump CMake version numbers to 4.4.0.
BUG: Remove unused metric test content link.
COMP: Add DLL to PATH for Python tests on Visual Studio.
BUG: Do not nullify the DCMTK ExternalProject UPDATE_COMMAND.
BUG: Fix DCMTK lib_prefix identification.
COMP: Fix HDF5 unused function for long long on Unix.
BUG: Remove unused metric test content link.
COMP: Add DLL to PATH for Python tests on Visual Studio.
ENH: Bump CMakeLists.txt ITK version to 4.3.1.
STYLE: Fix errors detected by KWStyleCodeTest.
COMP: VectorIndexSelectionCastImageFilter extra itk namespace.
STYLE: Fix alignment in itkMask{Image,Negated}ImageFilter.h
ENH: Doxygen configuration update to 1.8.3.1.
BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
DOC: Doxygen detection of DirectionTolerance as private.
ENH: Get Direction and CoordinateTolerance are const methods.
BUG: Add missing header to the third party TIFF install.
COMP: More fixes to mesh wrapping warnings.
BUG: Temporarily disable Python utility tests.
COMP: Avoid explicit instantiation and specialization for Array.
ENH: Add utility script to create JRE tarballs.
ENH: Use named inputs in BinaryReconstruction filters.
STYLE: Remove redundant itk namespace.
DOC: CreateTestDriver srcs should have the .cxx extension.
COMP: Must reinterpret the pointers to match
COMP: Fix project linking against ITK that does not use VtkGlue.
COMP: Fix project linking against ITK that does not use VtkGlue.
BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
ENH: Bump version in CMakeLists.txt to 4.3.2.
DOC: Doxygen expansion of itkGetModifiableObjectMacro.
ENH: Remove unused wrapping code. ITK-3032.
ENH: Use named inputs in BinaryReconstruction filters.
COMP: Distance maps filters cannot wrap 1D.
DOC: Remove reference to MeanDistanceImageFilter.
STYLE: Fix KWStyle errors.
STYLE: Remove entries from the old MINC2ImageIO.
BUG: Remove MINCIO from the default registered modules.
BUG: Add EXCLUDE_FROM_ALL to ThirdParty/MINC.
BUG: Include SCIFIO in the auto-registered factories if the module
is enabled.
BUG: Visual Studio itkClampImageFilterTest failures.
STYLE: itkClampImageFilter.hxx in the wrong module.
COMP: Add _CRT_NO_SECURE_WARNINGS when building GCCXML.
COMP: Prevent ITK_USE_64BITS_IDS with Wrapping on Windows.
STYLE: Too many blank lines in itkCastImageFilterTest.cxx.
COMP: Bump MINC third party to fix warnings.
Nick Tustison (4):
ENH: Adding masking capabilities with confidence mask option.
BUG: Masks need to be warped.
ENH: Permitting access to shrinking per dimension.
BUG: Valgrind error.
Nicolas Rey (1):
STYLE: Minor style fixes
Paul Novotny (3):
COMP: Fix TIFF on big endian systems
COMP: Build fails with ITK_USE_SYSTEM_TIFF
COMP: Fix TIFF on big endian systems
Prathamesh Kulkarni (1):
COMP: QuickViewTest new baseline.
Sean McBride (4):
STYLE: fixed minor spelling: XCode -> Xcode
COMP: fixed clang warning about NULL to bool conversion
BUG: Handle missing Analyze 7.5 flipped directions
COMP: Handle missing Analyze 7.5 flipped directions
Tim Allman (3):
DOC: Modify BSplineTransform comments.
DOC: Modify JointHistogramMutualInformationImageToImageMetricv4 comments.
DOC: Modify JointHistogramMutualInformationImageToImageMetricv4 comments.
Tom Vercauteren (2):
COMP: GPUPDEDeformableRegistrationFilter.cl fails to "compile".
COMP: GPUPDEDeformableRegistrationFilter.cl fails to "compile".
Vladimir S. FONOV (2):
ENH: Adding libminc and updating MINC IO support.
BUG: Making 2D Minc IO work properly
Xiaoxiao Liu (2):
ENH: Sync python scripts with python3.
ENH: Sync python scripts with python3.
Yan Xu (1):
COMP: static cast unsigned int to int
Changes in ITKapps from v4.3.0-apps to v4.4.0-apps:
Bill Lorensen (3):
COMP: VTK6 API change
ENH: Add TCL Wrapped examples
BUG: Missing includes for ITK4.4
Hans Johnson (1):
COMP: Mac 10.8 fixes were incorporated in FLTK
Jamie Snape (1):
BUG: Propagate build, linker, and OSX settings to external projects
Matt McCormick (6):
COMP: Re-add the FLTK patch for some Macs.
BUG: ITK External build only depends on VTK if being built.
COMP: Update FLTK SVN configuration.
ENH: Bump VTK ExternalProject to 5.10.1.
COMP: Use FLTK zip file stored on Midas3.
ENH: Bump ITK superbuild version to 4.4.0.
Roland Kwitt (1):
COMP: Shadowing warning in GLSliceView.h
Stephen R. Aylward (1):
COMP: Fix FLTK build error on Mac/Clang.
Xiaoxiao Liu (1):
ENH: Print out accurate image IO error message.
