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IDProjectCategoryView StatusDate SubmittedLast Update
0012925CMakeCMakepublic2012-02-01 03:072012-12-03 07:46
Reporterandreasvoegel 
Assigned ToAlexey Ozeritsky 
PrioritylowSeverityfeatureReproducibilityalways
StatusclosedResolutionfixed 
PlatformApple MacOSOS XOS Version10.4.10
Product Version 
Target VersionCMake 2.8.8Fixed in VersionCMake 2.8.8 
Summary0012925: FindBLAS.cmake and FindLAPACK.cmake Do Not Find Sequential MKL 10.3
DescriptionIntel MKL version 10.3 ships with a sequential version. FindBLAS and FindLAPACK only have support for the parallel versions, however. A fix seems as easy as adding an extra BLA_VENDOR for the the sequential version of MKL.
TagsNo tags attached.
Attached Files

 Relationships
related to 0013394closedAlexey Ozeritsky FindLAPACK does not find MKL 10.3 when using gcc 4.x 

  Notes
(0028476)
Alexey Ozeritsky (reporter)
2012-02-05 09:09

 I've added new vendor (Intel10_lp64_seq)
commit:
http://cmake.org/gitweb?p=stage/cmake.git;a=commitdiff;h=e69e816d21732b092b33ff7d36b7cc478350344e [^]
(0029083)
Maxime Boissonneault (reporter)
2012-04-05 18:05
edited on: 2012-04-05 18:15

 Thanks for the fix. It does work for me, however, I get a warning now (I've put FindBLAS and FindLAPACK in my CMakeModules folder to replace the ones that come with the cmake installation (2.8.7) on our server). I have tested it with all combinations of MKL 10.3.2 and MKL 10.2.2.025 with the compilers Intel 11.1.059, Intel 12.0.4, gcc 4.4.2 and gcc 4.6.1.


Here is the output :
CMake Warning (dev) at CMakeModules/FindBLAS.cmake:546 (if):
  given arguments:

    "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_lp64.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_thread.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_core.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/compiler/lib/intel64/libiomp5.so"

  Unknown arguments specified
Call Stack (most recent call first):
  CMakeLists.txt:23 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.

-- A library with BLAS API found.
CMake Warning (dev) at CMakeModules/FindBLAS.cmake:546 (if):
  given arguments:

    "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_lp64.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_thread.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_core.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/compiler/lib/intel64/libiomp5.so"

  Unknown arguments specified
Call Stack (most recent call first):
  CMakeModules/FindLAPACK.cmake:142 (find_package)
  CMakeLists.txt:24 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.
(0029084)
Maxime Boissonneault (reporter)
2012-04-05 19:28

 It however seems that this new FindBLAS does not work on Mac OS X with the Accelerate framework.
(0029085)
Alexey Ozeritsky (reporter)
2012-04-06 04:08

 Try latest version

http://cmake.org/gitweb?p=cmake.git;a=blob;f=Modules/FindBLAS.cmake;h=9eadfd125de9a6135bcad1cff103f15ae5415723;hb=HEAD [^]
(0029087)
Maxime Boissonneault (reporter)
2012-04-06 08:10
edited on: 2012-04-06 08:12

 Ok, it now works with :
Mac :
- gcc4.2.1 + Accelerate
Linux (CentOS) :
- Intel 12.0.4 + mkl/10.2.2.025 or mkl/10.3.4
- Intel 11.1.059 + mkl/10.2.2.025 or mkl/10.3.4
- gcc 4.6.1 + mkl/10.2.2.025
- gcc 4.4.2 + mkl/10.2.2.025

However, with gcc 4.6.1 or gcc 4.4.2 + mkl/10.3.4, it fails at finding LAPACK.
It looks like with gcc, it does not detect the sequential version of MKL, but rather first the multi-threaded version, and then it does not include the -fopenmp flag.

I get the following CMakeError.log message :

 30 /software/tools/cmake/2.8.7/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1
 31 /software/compilers/gcc/4.6.1/bin/gcc -DCHECK_FUNCTION_EXISTS=cheev_ CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec -rdynamic -lmkl_gf_lp64 -lmkl_intel_lp64 - lmkl_gnu_thread -lmkl_core -lpthread -lm
 32 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_end'
 33 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_thread_num'
 34 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_sections_end_nowait'
 35 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_num_threads'
 36 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_num_procs'
 37 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_ordered_start'
 38 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_sections_start'
 39 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_name_end'
 40 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_parallel_start'
 41 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_single_start'
 42 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_nested'
 43 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_in_parallel'
 44 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_end'
 45 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_max_threads'
 46 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_end_nowait'
 47 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_set_nested'
 48 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_static_start'
 49 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_dynamic_next'
 50 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_start'
 51 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_name_start'
 52 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_ordered_end'
 53 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_dynamic_start'
 54 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_parallel_end'
 55 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_sections_next'
 56 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_barrier'
 57 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_parallel_sections_start'
 58 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_dynamic_next'
 59 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_static_next'
 60 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_dynamic_start'
 61 collect2: ld a retourné 1 code d'état d'exécution
 62 gmake[1]: *** [cmTryCompileExec] Erreur 1
 63 gmake[1]: quittant le répertoire « /home/mboisson/squack-code/CMakeFiles/CMakeTmp »
 64 gmake: *** [cmTryCompileExec/fast] Erreur 2
(0031806)
David Cole (manager)
2012-12-03 07:46

 Closing resolved issues that have not been updated in more than 4 months.

 Issue History
Date Modified Username Field Change
2012-02-01 03:07 andreasvoegel New Issue
2012-02-01 03:14 Alexey Ozeritsky Assigned To => Alexey Ozeritsky
2012-02-01 03:14 Alexey Ozeritsky Status new => assigned
2012-02-05 09:09 Alexey Ozeritsky Note Added: 0028476
2012-04-05 18:05 Maxime Boissonneault Note Added: 0029083
2012-04-05 18:15 Maxime Boissonneault Note Edited: 0029083
2012-04-05 19:28 Maxime Boissonneault Note Added: 0029084
2012-04-06 04:08 Alexey Ozeritsky Note Added: 0029085
2012-04-06 08:10 Maxime Boissonneault Note Added: 0029087
2012-04-06 08:11 Maxime Boissonneault Note Edited: 0029087
2012-04-06 08:12 Maxime Boissonneault Note Edited: 0029087
2012-04-19 16:09 David Cole Target Version => CMake 2.8.8
2012-04-19 16:09 David Cole Status assigned => resolved
2012-04-19 16:09 David Cole Fixed in Version => CMake 2.8.8
2012-04-19 16:09 David Cole Resolution open => fixed
2012-07-11 13:09 Brad King Relationship added related to 0013394
2012-12-03 07:46 David Cole Note Added: 0031806
2012-12-03 07:46 David Cole Status resolved => closed

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