MantisBT - CMake
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IDProjectCategoryView StatusDate SubmittedLast Update
0012925CMakeCMakepublic2012-02-01 03:072012-12-03 07:46
Reporterandreasvoegel 
Assigned ToAlexey Ozeritsky 
PrioritylowSeverityfeatureReproducibilityalways
StatusclosedResolutionfixed 
PlatformApple MacOSOS XOS Version10.4.10
Product Version 
Target VersionCMake 2.8.8Fixed in VersionCMake 2.8.8 
Summary0012925: FindBLAS.cmake and FindLAPACK.cmake Do Not Find Sequential MKL 10.3
DescriptionIntel MKL version 10.3 ships with a sequential version. FindBLAS and FindLAPACK only have support for the parallel versions, however. A fix seems as easy as adding an extra BLA_VENDOR for the the sequential version of MKL.
Steps To Reproduce
Additional Information
TagsNo tags attached.
Relationships
related to 0013394closed Alexey Ozeritsky FindLAPACK does not find MKL 10.3 when using gcc 4.x 
Attached Files
Issue History
Date ModifiedUsernameFieldChange
2012-02-01 03:07andreasvoegelNew Issue
2012-02-01 03:14Alexey OzeritskyAssigned To => Alexey Ozeritsky
2012-02-01 03:14Alexey OzeritskyStatusnew => assigned
2012-02-05 09:09Alexey OzeritskyNote Added: 0028476
2012-04-05 18:05Maxime BoissonneaultNote Added: 0029083
2012-04-05 18:15Maxime BoissonneaultNote Edited: 0029083bug_revision_view_page.php?bugnote_id=29083#r593
2012-04-05 19:28Maxime BoissonneaultNote Added: 0029084
2012-04-06 04:08Alexey OzeritskyNote Added: 0029085
2012-04-06 08:10Maxime BoissonneaultNote Added: 0029087
2012-04-06 08:11Maxime BoissonneaultNote Edited: 0029087bug_revision_view_page.php?bugnote_id=29087#r595
2012-04-06 08:12Maxime BoissonneaultNote Edited: 0029087bug_revision_view_page.php?bugnote_id=29087#r596
2012-04-19 16:09David ColeTarget Version => CMake 2.8.8
2012-04-19 16:09David ColeStatusassigned => resolved
2012-04-19 16:09David ColeFixed in Version => CMake 2.8.8
2012-04-19 16:09David ColeResolutionopen => fixed
2012-07-11 13:09Brad KingRelationship addedrelated to 0013394
2012-12-03 07:46David ColeNote Added: 0031806
2012-12-03 07:46David ColeStatusresolved => closed

Notes
(0028476)
Alexey Ozeritsky   
2012-02-05 09:09   
I've added new vendor (Intel10_lp64_seq)
commit:
http://cmake.org/gitweb?p=stage/cmake.git;a=commitdiff;h=e69e816d21732b092b33ff7d36b7cc478350344e [^]
(0029083)
Maxime Boissonneault   
2012-04-05 18:05   
(edited on: 2012-04-05 18:15)
Thanks for the fix. It does work for me, however, I get a warning now (I've put FindBLAS and FindLAPACK in my CMakeModules folder to replace the ones that come with the cmake installation (2.8.7) on our server). I have tested it with all combinations of MKL 10.3.2 and MKL 10.2.2.025 with the compilers Intel 11.1.059, Intel 12.0.4, gcc 4.4.2 and gcc 4.6.1.


Here is the output :
CMake Warning (dev) at CMakeModules/FindBLAS.cmake:546 (if):
  given arguments:

    "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_lp64.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_thread.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_core.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/compiler/lib/intel64/libiomp5.so"

  Unknown arguments specified
Call Stack (most recent call first):
  CMakeLists.txt:23 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.

-- A library with BLAS API found.
CMake Warning (dev) at CMakeModules/FindBLAS.cmake:546 (if):
  given arguments:

    "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_lp64.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_intel_thread.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_core.so" "/software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/compiler/lib/intel64/libiomp5.so"

  Unknown arguments specified
Call Stack (most recent call first):
  CMakeModules/FindLAPACK.cmake:142 (find_package)
  CMakeLists.txt:24 (FIND_PACKAGE)
This warning is for project developers. Use -Wno-dev to suppress it.
(0029084)
Maxime Boissonneault   
2012-04-05 19:28   
It however seems that this new FindBLAS does not work on Mac OS X with the Accelerate framework.
(0029085)
Alexey Ozeritsky   
2012-04-06 04:08   
Try latest version

http://cmake.org/gitweb?p=cmake.git;a=blob;f=Modules/FindBLAS.cmake;h=9eadfd125de9a6135bcad1cff103f15ae5415723;hb=HEAD [^]
(0029087)
Maxime Boissonneault   
2012-04-06 08:10   
(edited on: 2012-04-06 08:12)
Ok, it now works with :
Mac :
- gcc4.2.1 + Accelerate
Linux (CentOS) :
- Intel 12.0.4 + mkl/10.2.2.025 or mkl/10.3.4
- Intel 11.1.059 + mkl/10.2.2.025 or mkl/10.3.4
- gcc 4.6.1 + mkl/10.2.2.025
- gcc 4.4.2 + mkl/10.2.2.025

However, with gcc 4.6.1 or gcc 4.4.2 + mkl/10.3.4, it fails at finding LAPACK.
It looks like with gcc, it does not detect the sequential version of MKL, but rather first the multi-threaded version, and then it does not include the -fopenmp flag.

I get the following CMakeError.log message :

 30 /software/tools/cmake/2.8.7/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1
 31 /software/compilers/gcc/4.6.1/bin/gcc -DCHECK_FUNCTION_EXISTS=cheev_ CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec -rdynamic -lmkl_gf_lp64 -lmkl_intel_lp64 - lmkl_gnu_thread -lmkl_core -lpthread -lm
 32 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_end'
 33 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_thread_num'
 34 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_sections_end_nowait'
 35 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_num_threads'
 36 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_num_procs'
 37 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_ordered_start'
 38 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_sections_start'
 39 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_name_end'
 40 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_parallel_start'
 41 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_single_start'
 42 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_nested'
 43 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_in_parallel'
 44 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_end'
 45 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_get_max_threads'
 46 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_end_nowait'
 47 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `omp_set_nested'
 48 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_static_start'
 49 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_dynamic_next'
 50 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_start'
 51 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_critical_name_start'
 52 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_ordered_end'
 53 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_dynamic_start'
 54 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_parallel_end'
 55 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_sections_next'
 56 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_barrier'
 57 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_parallel_sections_start'
 58 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_dynamic_next'
 59 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_ordered_static_next'
 60 /software/intel/parallel_studio_xe_2011_update2/composerxe-2011.4.191/mkl/lib/intel64/libmkl_gnu_thread.so: undefined reference to `GOMP_loop_dynamic_start'
 61 collect2: ld a retourné 1 code d'état d'exécution
 62 gmake[1]: *** [cmTryCompileExec] Erreur 1
 63 gmake[1]: quittant le répertoire « /home/mboisson/squack-code/CMakeFiles/CMakeTmp »
 64 gmake: *** [cmTryCompileExec/fast] Erreur 2
(0031806)
David Cole   
2012-12-03 07:46   
Closing resolved issues that have not been updated in more than 4 months.