[vtkusers] 3-D plot using a series of 2-D MRIs

[BURAK UZKENT (RIT Student)]

Hi,

No. They are not DICOM files. They are all .tif files. Is there any
solution to follow in this case? I checked the examples page but could not
find a very related one.

Burak

*Kind Regards*
*-----------------------------------------------------*
*Burak Uzkent*
*PhD Student*
*Graduate Research Assistant*
*Imaging Science *
*Rochester Institute of Technology*
*Web: http://people.rit.edu/bxu2522/ <http://people.rit.edu/bxu2522/> *


On Mon, Jun 30, 2014 at 4:27 AM, Wright James (NHS Greater Glasgow & Clyde)
<jamie.wright at nhs.net> wrote:

>  Hi Burak,
>
> Are the 2d MRI slices a series of dicom files? If so you could read them
> into VTK using vtkDICOMImageReader, see
> http://www.vtk.org/Wiki/VTK/Examples/Cxx/IO/ReadDICOM, then you could
> extract the necessary isosurface using vtkContourFilter, e.g.
> https://github.com/Kitware/VTK/blob/master/Examples/Medical/Cxx/Medical2.cxx
>
> The vtk examples have a series of medical examples that could be useful
> for what you are trying to achieve
>
> Jamie Wright | Clinical Scientist | Nuclear Medicine | NHSGGC (Southern
> General and Glasgow Royal Infirmary)
> jamie.wright at nhs.net
>
>  ------------------------------
> *From:* vtkusers [vtkusers-bounces at vtk.org] On Behalf Of BURAK UZKENT
> (RIT Student) [bxu2522 at rit.edu]
> *Sent:* 27 June 2014 23:32
> *To:* vtkusers at vtk.org
> *Subject:* [vtkusers] 3-D plot using a series of 2-D MRIs
>
>   Hello everyone,
>
>  I have a series of short-axis MRI images of human heart. I want to stack
> all the 2-D images in a 3-D matrix and display it in C++ in 3-D. Basically,
> what I am looking for is a function like isosurface and patch in Matlab.  I
> will deeply appreciate any help.
>
>  *Kind Regards*
> *-----------------------------------------------------*
> *Burak Uzkent*
> *PhD Student*
> *Graduate Research Assistant*
> *Imaging Science *
>  *Rochester Institute of Technology*
> *Web: http://people.rit.edu/bxu2522/ <http://people.rit.edu/bxu2522/> *
>
>
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