[vtkusers] VTK and Trilinos

[Truman Ellis]

Thanks for the reference, I will look into it.

On 06/21/2012 12:43 PM, Eric E. Monson wrote:
> Hey Truman,
>
> I'm sorry that this won't answer your question, but I wanted to check
> to make sure you are aware of Sandia's Titan project which
> incorporates both VTK and Trilinos, and includes code linking to both:
>
> titan.sandia.gov <http://titan.sandia.gov>
>
> There's also a separate mailing list for Titan if you're interested in
> accessing those folks more directly (although some also monitor the
> VTK mailing list):
>
> http://public.kitware.com/cgi-bin/mailman/listinfo/titan-users
>
> Good luck,
> -Eric
>
> · · · · · · · · · · · · · · · · · · · · · · · · · · · · · · · · · · ·
> Eric E Monson
> Duke Visualization Technology Group
>
>
> On Jun 21, 2012, at 1:00 PM, Truman Ellis wrote:
>
>> I am using a CMake build system to build my code with Trilinos, and
>> everything works just fine. I started trying to additionally link
>> with VTK, which also assumes a CMake build system. I have test codes
>> which only link to VTK, and my current code only links to Trilinos.
>> But when I try to make my code link to both VTK and Trilinos, they
>> don't seem to play well together. For some reason, when I link to
>> both VTK and Trilinos, I get errors of the type:
>> ../../libCamellia.so: undefined reference to
>> `Epetra_MpiComm::Epetra_MpiComm(ompi_communicator_t*)'
>>
>> (We have a library called Camellia and several drivers such as
>> NavierStokes below)
>>
>> The verbose makefile output that generated this error is:
>>
>> Linking CXX executable NavierStokes
>> cd /workspace/truman/Camellia/bin/drivers/NavierStokes &&
>> /usr/bin/cmake -E cmake_link_script
>> CMakeFiles/NavierStokes.dir/link.txt --verbose=1
>> /usr/bin/mpicxx     -Wno-deprecated -g   
>> CMakeFiles/NavierStokes.dir/NSDriver.cpp.o  -o NavierStokes -rdynamic
>> -L/usr/lib/vtk-5.2
>> -L/workspace/truman/trilinos_builds/mpi_release/lib
>> -L/workspace/jchan/MUMPS_4.9.2/lib -L/workspace/jchan/lib/scalapack
>> -lvtkHybrid ../../libCamellia.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libintrepid.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libml.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libifpack.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libpamgen_extras.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libpamgen.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libamesos.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libgaleri.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libaztecoo.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libisorropia.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libepetraext.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libtpetraext.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libtpetrainout.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libtpetra.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libtriutils.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libshards.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libzoltan.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libepetra.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libkokkoslinalg.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libkokkosnodeapi.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libkokkos.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libsacado.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libtpi.so
>> /workspace/truman/trilinos_builds/mpi_release/lib/libteuchos.so
>> -ldmumps -lmumps_common -lpord -llapack -lblas -lpthread -lscalapack
>> -lvtkHybrid -lvtkParallel -lvtkRendering -lvtkGraphics -lvtkverdict
>> -lvtkImaging -lvtkftgl -lfreetype -lgl2ps -lGL -lXt -lSM -lICE -lX11
>> -lXext -lXss -lXft -lvtkIO -lmysqlclient -lvtkFiltering -lvtkCommon
>> -lpthread -lm -lvtkDICOMParser -lvtkmetaio -lvtksqlite -lpng -lz
>> -ljpeg -ltiff -lexpat -lvtksys -ldl -lavcodec -lavformat -lavutil
>> -lswscale -lvtkexoIIc -lvtkNetCDF /usr/lib/openmpi/lib/libmpi_cxx.so
>> /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so
>> /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnsl -lutil -lm -ldl -lnsl
>> -lutil -lm /workspace/jchan/MUMPS_4.9.2/lib/libdmumps.a
>> /workspace/jchan/MUMPS_4.9.2/lib/libpord.a
>> /workspace/jchan/MUMPS_4.9.2/lib/libmumps_common.a -lpthread -llapack
>> -lblas
>> -Wl,-rpath,/usr/lib/vtk-5.2:/workspace/truman/trilinos_builds/mpi_release/lib:/workspace/jchan/MUMPS_4.9.2/lib:/workspace/jchan/lib/scalapack:/workspace/truman/Camellia/bin:/usr/lib/openmpi/lib
>> ../../libCamellia.so: undefined reference to
>> `Epetra_MpiComm::Epetra_MpiComm(ompi_communicator_t*)'
>> collect2: ld returned 1 exit status
>>
>> I've messed around with this for two days now, and I can't seem to
>> figure out what is going wrong.
>>
>> Any ideas?
>> -- 
>> Truman Ellis
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-- 
Truman Ellis

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