[vtkusers] Filling in blood vessels

Gib Bogle g.bogle at auckland.ac.nz
Mon Dec 20 15:49:30 EST 2010


On 21/12/2010 9:34 a.m., Kevin H. Hobbs wrote:
> On 12/20/2010 03:15 PM, Gib Bogle wrote:
>> Are you aware of a simple way to take a
>> stack of TIFF files and convert it into a form readable by ITK-snap?
>>
> I just created 6 tiff 100x100 files in the gimp.
>
> I wrote a mhd file :
>
> $ cat stack.mhd
> NDims = 3
> DimSize = 100 100 6
> ElementSpacing = 1 1 20
> ElementType = MET_UCHAR
> ElementDataFile = LIST 2
> 1.tiff
> 2.tiff
> 3.tiff
> 4.tiff
> 5.tiff
> 6.tiff
>
> I started paraview, opened stack.mhd and volume rendered it (for kicks)
> and all was well.
>

That looks very promising!  I'll give it a shot...

It works!  Nice and simple.

Thanks a lot
Gib




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