[vtkusers] Installing VTK 5.0 on Mac OSX 10.4.6
Siddartha Krishnan
sidd.krish at gmail.com
Tue May 16 10:56:22 EDT 2006
I get this error when I run it from an X11.app terminal window. Any
Idea as to what is causing it?
user409:~ siddarthakrishnan$ g++ test.cpp -I/usr/local/include/
vtk-5.0 -L/Develo
p/VTKBuild/Bin -lvtkCommon -lvtkFiltering -lvtkRendering -
lvtkGraphics -lvtkImag
ing
In file included from /usr/include/c++/4.0.0/backward/strstream:51,
from /usr/local/include/vtk-5.0/vtkIOStream.h:36,
from /usr/local/include/vtk-5.0/vtkSystemIncludes.h:
40,
from /usr/local/include/vtk-5.0/vtkIndent.h:24,
from /usr/local/include/vtk-5.0/vtkObjectBase.h:43,
from /usr/local/include/vtk-5.0/vtkObject.h:41,
from /usr/local/include/vtk-5.0/vtkProperty.h:31,
from test.cpp:1:
/usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning:
#warning This
file includes at least one deprecated or antiquated header. Please
consider usin
g one of the 32 headers found in section 17.4.1.2 of the C++
standard. Examples
include substituting the <X> header for the <X.h> header for C++
includes, or <i
ostream> instead of the deprecated header <iostream.h>. To disable
this warning
use -Wno-deprecated.
/usr/bin/ld: warning can't open dynamic library: libvtksys.dylib.5.0
referenced
from: /Develop/VTKBuild/Bin/libvtkCommon.dylib (checking for
undefined symbols m
ay be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkIO.dylib.5.0
referenced f
rom: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symbols
may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkftgl.dylib.5.0
referenced
from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symbo
ls may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkfreetype.dylib.
5.0 refere
nced from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined s
ymbols may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library:
libvtkDICOMParser.dylib.5.0 ref
erenced from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking
for undefine
d symbols may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkpng.dylib.5.0
referenced
from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symbol
s may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtktiff.dylib.5.0
referenced
from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symbo
ls may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkzlib.dylib.5.0
referenced
from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symbo
ls may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkjpeg.dylib.5.0
referenced
from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symbo
ls may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library: libvtkexpat.dylib.
5.0 reference
d from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking for
undefined symb
ols may be affected) (No such file or directory, errno = 2)
/usr/bin/ld: warning can't open dynamic library:
libvtkMPEG2Encode.dylib.5.0 ref
erenced from: /Develop/VTKBuild/Bin/libvtkRendering.dylib (checking
for undefine
d symbols may be affected) (No such file or directory, errno = 2)
On 15-May-06, at 10:28 AM, Mike Jackson wrote:
> Try running your application from an "X11.app" terminal window. Note
> that this is different that your regular "Terminal.app" terminal
> window. "X11.app" should be located in /Applications/Utilities on your
> hard drive. If it is not there then you will need to install it from
> the original installation media that came with your Mac OS X system.
> It is typically an Optional install.
>
> Good Luck.
>
> On 5/15/06, Siddartha Krishnan <sidd.krish at gmail.com> wrote:
>> Hi again,
>> Is there any way I can use X-windows on VTK for the mac? I need my
>> program to be portable between windows, linux and mac.
>> If there is no way to use X-windows on a mac, how else can I make the
>> code more portable? Will using cocoa or carbon work?
>>
>> Thanks,
>>
>> Siddartha
>>
>>
>>
>> On 12-May-06, at 5:18 PM, Mike Jackson wrote:
>>
>> > You need to build VTK against Cocoa or Carbon and NOT X-Windows.
>> > Remake VTK turning ON Cocoa, turning OFF "X-Windows", turning ON
>> > "Shared Libs".
>> >
>> > After that things should work.
>> >
>> > Mike
>> >
>> > On 5/12/06, Siddartha Krishnan <sidd.krish at gmail.com> wrote:
>> >> Sorry to bother you again,
>> >>
>> >> In Xcode, I have added the libraries (common, rendering,
>> filtering,
>> >> graphics, imaging), the openGL framework, and the header files
>> as you
>> >> described. Now i get the following errors when trying to run the
>> >> program:
>> >>
>> >> [Session started at 2006-05-12 16:56:53 -0400.]
>> >> ERROR: In /Develop/VTK/Rendering/vtkXOpenGLRenderWindow.cxx, line
>> >> 1046
>> >> vtkXOpenGLRenderWindow (0x2b10ac0): bad X server connection.
>> >>
>> >> ERROR: In /Develop/VTK/Rendering/vtkXOpenGLRenderWindow.cxx,
>> line 169
>> >> vtkXOpenGLRenderWindow (0x2b10ac0): bad X server connection.
>> >>
>> >> VTKTEST has exited due to signal 10 (SIGBUS).
>> >>
>> >> Is there anything else I need to add?
>> >>
>> >> Thanks for the help...I am very new to all this.
>> >>
>> >>
>> >> On 12-May-06, at 2:56 PM, Mike Jackson wrote:
>> >>
>> >> > You also need to link against the vtk libs. I don't see those
>> >> > arguments in your command line compile. I think those are the "-
>> >> L" for
>> >> > what directory to look for libraries and "-l" to tell g++ what
>> >> > libraries to link against. so something line g++ test.cpp
>> >> > -I/usr/local/include/vtk-5.0 -L/Develop/VTKBuild/bin -lvtkCommon
>> >> > -lvtkFiltering -lvtkRendering ......
>> >> >
>> >> > To add the libraries to your xcode project drag them from the
>> >> Finder
>> >> > into your Xcode project. Xcode should add them to your target as
>> >> > libraries to link against. The reason you are getting the
>> runtime
>> >> > error in Xcode is because XCode is using "Zero Link" by
>> default to
>> >> > lazily link against the Libraries. You can open up the build
>> >> settings
>> >> > window for your target and uncheck this option. It is in the
>> same
>> >> > place that you added the Include files.
>> >> >
>> >> > Mike
>> >> >
>> >> > On 5/12/06, Siddartha Krishnan <sidd.krish at gmail.com> wrote:
>> >> >> Hi,
>> >> >> Thanks for your help, I recompiled vtk and used make install
>> and
>> >> >> now /
>> >> >> usr/local/include /vtk-5.0 exists. However, when I now try to
>> >> run the
>> >> >> sample code, I get the following errors:
>> >> >>
>> >> >> mie-13-4:~ siddarthakrishnan$ g++ test.cpp -I/usr/local/
>> include/
>> >> >> vtk-5.0
>> >> >> In file included from /usr/include/c++/4.0.0/backward/
>> strstream:
>> >> 51,
>> >> >> from /usr/local/include/vtk-5.0/
>> vtkIOStream.h:
>> >> 36,
>> >> >> from /usr/local/include/vtk-5.0/
>> >> >> vtkSystemIncludes.h:
>> >> >> 40,
>> >> >> from /usr/local/include/vtk-5.0/
>> vtkIndent.h:24,
>> >> >> from /usr/local/include/vtk-5.0/
>> >> vtkObjectBase.h:43,
>> >> >> from /usr/local/include/vtk-5.0/
>> vtkObject.h:41,
>> >> >> from /usr/local/include/vtk-5.0/
>> vtkProperty.h:
>> >> 31,
>> >> >> from test.cpp:1:
>> >> >> /usr/include/c++/4.0.0/backward/backward_warning.h:32:2:
>> warning:
>> >> >> #warning This file includes at least one deprecated or
>> antiquated
>> >> >> header. Please consider using one of the 32 headers found in
>> >> section
>> >> >> 17.4.1.2 of the C++ standard. Examples include substituting the
>> >> <X>
>> >> >> header for the <X.h> header for C++ includes, or <iostream>
>> >> instead
>> >> >> of the deprecated header <iostream.h>. To disable this warning
>> >> use -
>> >> >> Wno-deprecated.
>> >> >> /usr/bin/ld: Undefined symbols:
>> >> >> vtkProperty::SetColor(double, double, double)
>> >> >> vtkRenderer::New()
>> >> >> vtkRenderer::AddActor(vtkProp*)
>> >> >> vtkRenderWindow::New()
>> >> >> vtkSphereSource::New()
>> >> >> vtkPolyDataMapper::New()
>> >> >> vtkPolyDataMapper::SetInput(vtkPolyData*)
>> >> >> vtkPolyDataAlgorithm::GetOutput()
>> >> >> vtkRenderWindowInteractor::SetRenderWindow(vtkRenderWindow*)
>> >> >> vtkRenderWindowInteractor::New()
>> >> >> vtkActor::GetProperty()
>> >> >> vtkActor::New()
>> >> >> collect2: ld returned 1 exit status
>> >> >>
>> >> >> and in Xcode I get the following error:
>> >> >>
>> >> >> Session started at 2006-05-12 14:06:37 -0400.]
>> >> >> ZeroLink: unknown symbol '__ZN15vtkSphereSource3NewEv'
>> >> >>
>> >> >> VTKTEST has exited due to signal 6 (SIGABRT).
>> >> >>
>> >> >> I'm not sure what these errors mean.
>> >> >> Thanks for the help,
>> >> >>
>> >> >> Sidd
>> >> >>
>> >> >>
>> >> >> Also, The source code for the sample file is:
>> >> >>
>> >> >> #include <iostream>
>> >> >>
>> >> >> #include "vtkProperty.h"
>> >> >> #include "vtkSphereSource.h"
>> >> >> #include "vtkPolyDataMapper.h"
>> >> >> #include "vtkActor.h"
>> >> >> #include "vtkRenderWindow.h"
>> >> >> #include "vtkRenderer.h"
>> >> >> #include "vtkRenderWindowInteractor.h"
>> >> >>
>> >> >> int main ()
>> >> >> {
>> >> >>
>> >> >> // create sphere geometry
>> >> >> vtkSphereSource *sphere = vtkSphereSource::New();
>> >> >> sphere->SetRadius(1.0);
>> >> >> sphere->SetThetaResolution(18);
>> >> >> sphere->SetPhiResolution(18);
>> >> >>
>> >> >> // map to graphics library
>> >> >> vtkPolyDataMapper *map = vtkPolyDataMapper::New();
>> >> >> map->SetInput(sphere->GetOutput());
>> >> >>
>> >> >> // actor coordinates geometry, properties, transformation
>> >> >> vtkActor *aSphere = vtkActor::New();
>> >> >> aSphere->SetMapper(map);
>> >> >> aSphere->GetProperty()->SetColor(0,0,1); // sphere color
>> blue
>> >> >>
>> >> >> // a renderer and render window
>> >> >> vtkRenderer *ren1 = vtkRenderer::New();
>> >> >> vtkRenderWindow *renWin = vtkRenderWindow::New();
>> >> >> renWin->AddRenderer(ren1);
>> >> >>
>> >> >> // an interactor
>> >> >> vtkRenderWindowInteractor *iren =
>> >> vtkRenderWindowInteractor::New
>> >> >> ();
>> >> >> iren->SetRenderWindow(renWin);
>> >> >>
>> >> >> // add the actor to the scene
>> >> >> ren1->AddActor(aSphere);
>> >> >> ren1->SetBackground(1,1,1); // Background color white
>> >> >>
>> >> >> // render an image (lights and cameras are created
>> >> automatically)
>> >> >> renWin->Render();
>> >> >>
>> >> >> // begin mouse interaction
>> >> >> iren->Start();
>> >> >>
>> >> >> return 0;
>> >> >> }
>> >> >>
>> >> >>
>> >> >> On 11-May-06, at 5:03 PM, Mike Jackson wrote:
>> >> >>
>> >> >> > On 5/11/06, Siddartha Krishnan <sidd.krish at gmail.com> wrote:
>> >> >> >> Hi again,
>> >> >> >> Thanks for your prompt replies. I corrected the alias
>> line to
>> >> >> alias
>> >> >> >> vtk='${VTKBUILD}/bin/vtk'
>> >> >> >>
>> >> >> >> However, the headers still cannot be found:
>> >> >> >> main.cpp:3:29: error: vtkSphereSource.h: No such file or
>> >> directory
>> >> >> >> main.cpp:4:31: error: vtkPolyDataMapper.h: No such file or
>> >> >> directory
>> >> >> >> main.cpp:5:22: error: vtkActor.h: No such file or directory
>> >> >> >> main.cpp:6:29: error: vtkRenderWindow.h: No such file or
>> >> directory
>> >> >> >> main.cpp:7:25: error: vtkRenderer.h: No such file or
>> directory
>> >> >> >> main.cpp:8:39: error: vtkRenderWindowInteractor.h: No such
>> >> file or
>> >> >> >> directory
>> >> >> >>
>> >> >> >> I tried both using the command line and XCode (after
>> >> changing the
>> >> >> >> Header Search Paths), but still get these messages.
>> >> >> >> Are there any other suggestions to solve this problem?
>> >> >> >>
>> >> >> >> Thanks.
>> >> >> >>
>> >> >> >>
>> >> >> >>
>> >> >> >> On 11-May-06, at 4:06 PM, Mike Jackson wrote:
>> >> >> >>
>> >> >> >> > On 5/11/06, Siddartha Krishnan <sidd.krish at gmail.com>
>> wrote:
>> >> >> >> >> Hi,
>> >> >> >> >>
>> >> >> >> >> I relatively new to Mac OSX and am having trouble
>> setting up
>> >> >> >> VTK 5.0
>> >> >> >> >> on OSX 10.4.6. I used cmake to build vtk and it did so
>> >> >> without any
>> >> >> >> >> errors, but cannot seem to run the sample code on the
>> >> vtk.org
>> >> >> >> site.
>> >> >> >> >> I get the following errors:
>> >> >> >> >> <snip>
>> >> >> >> >> export VTKBUILD=/Develop/VTKBuild
>> >> >> >> >> export VTKSOURCE=/Develop/VTK
>> >> >> >> >> export TCLLIBPATH=${VTKSOURCE}/Wrapping/Tcl:
>> >> >> >> >> export PYTHONPATH=${VTKSOURCE}/Wrapping/Python:$
>> {VTKBUILD}
>> >> >> >> >> export DYLD_LIBRARYN32_PATH=${VTKBUILD}
>> >> >> >> >> alias vtk ${VTKBUILD}/bin/vtk
>> >> >> >> >>
>> >> >> >> >> but whenever I try to source .profile, the following
>> errors
>> >> >> occur:
>> >> >> >> >> -bash: alias: vtk: not found
>> >> >> >> >> -bash: alias: /Develop/VTKBuild/bin/vtk: not found
>> >> >> >> >>
>> >> >> >> >> These files do exist.
>> >> >> >> >>
>> >> >> >> >> I would appreciate any help I can get.
>> >> >> >> >> Thanks in Advance,
>> >> >> >> >>
>> >> >> >> >> Sidd
>> >> >> >> >>
>> >> >> >> >
>> >> >> >> > I also run bash as my shell but I make an alias like the
>> >> >> following:
>> >> >> >> >
>> >> >> >> > alias vtk='${VTKBUILD}/bin/vtk'
>> >> >> >> >
>> >> >> >> > Are you trying to compile from the command line or in
>> Xcode?
>> >> >> If you
>> >> >> >> > are in Xcode you will probably have to set the Header
>> Search
>> >> >> >> Paths to
>> >> >> >> > find the VTK Headers.
>> >> >> >> >
>> >> >> >> > If you do a "make install" for VTK, I think that is
>> where it
>> >> >> >> will dump
>> >> >> >> > all the headers in /usr/local/include/vtk-5.0
>> >> >> >> >
>> >> >> >> > If you want to contiue to use cmake from the command
>> line it
>> >> >> >> does work
>> >> >> >> > pretty good on OS X, assuming you do NOT need to build for
>> >> >> multiple
>> >> >> >> > Architectures.
>> >> >> >> > --
>> >> >> >> > Mike Jackson
>> >> >> >> > imikejackson _at_ gee-mail dot com
>> >> >> >>
>> >> >> >
>> >> >> > Well,
>> >> >> > I no expert on compiling from the command line. I know
>> >> there is
>> >> >> > the -I flag that should point to the vtk Headers. If you are
>> >> >> > referencing the headers in the /Develop/VTK location, note
>> >> that the
>> >> >> > headers are broken into several different directories
>> ( Common.
>> >> >> > Filtering, Graphics....) so you will need an include path for
>> >> EACH
>> >> >> > directory that you are using headers from. So for example,
>> >> >> > vtkSphereSource is in Graphics and vtkPolyDataMapper is in
>> >> >> Rendering.
>> >> >> > The same idea goes for Xcode. In Xcode disclose the
>> "Targets"
>> >> >> group
>> >> >> > to show all your targets. Double Click on the target you are
>> >> >> trying to
>> >> >> > build. Then click on the "Build" tab. Now look down the
>> list for
>> >> >> the
>> >> >> > "User Header Search Path". Edit the value next to the setting
>> >> >> using a
>> >> >> > SPACE delimited set of paths that point to the include
>> >> directories.
>> >> >> >
>> >> >> > The easiest way to set this up is to do a "make install". I
>> >> _think_
>> >> >> > (some one correct me here) that will just make a single
>> >> >> directory down
>> >> >> > in /usr/local/include named "vtk-5.0" and put ALL the
>> headers in
>> >> >> > there. That way you only need to spell out ONE include
>> directory
>> >> >> for
>> >> >> > ALL the VTK headers.
>> >> >> >
>> >> >> > Also, if you are having troubles with Xcode itself, then I
>> might
>> >> >> > suggest trying:
>> >> >> >
>> >> >> > http://www.lists.apple.com/mailman/listinfo/xcode-users
>> >> >> >
>> >> >> > Hope that helps.
>> >> >> > --
>> >> >> > Mike Jackson
>> >> >> > imikejackson _at_ gee-mail dot com
>> >> >>
>> >> >>
>> >> >
>> >> >
>> >> > --
>> >> > Mike Jackson
>> >> > imikejackson _at_ gee-mail dot com
>> >>
>> >>
>> >
>> >
>> > --
>> > Mike Jackson
>> > imikejackson _at_ gee-mail dot com
>>
>>
>
>
> --
> Mike Jackson
> imikejackson _at_ gee-mail dot com
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