[vtkusers] VTK CVS not building on OSX 10.4 intel, shared, carbon, python wrapping, minsizerel, Undefined Symbols at linking Graphics

Glen Lehmann glehmann at atamai.com
Mon Jun 5 15:14:06 EDT 2006


Hi Dan,

I just checked my nightly VTK build and it passed all the ctests.
There are 2 differences in my build:

1) It builds against the default python 2.3 (/System/Library)

2) I always build nightly VTK with a nightly CMake.

Since, the linker isn't complaining about the vtkGraphicsPython, my
guess is to try using a nightly checkout of CMake.

HTH,

Glen

On 05/06/06, Dan White <dan at chalkie.org.uk> wrote:
> Hi,
>
> Todays CVS does not seem to build on OSX 10.4
>   MacBook Pro 2GHz Intel core duo
>
> Cmake ccmake . 2.4 patch2 universal binary
> Shared  libs On
> Python wrapping to universal build of python2.4 ON
> MinSizeRel build
> Native OSX Carbon, not X11 or cocoa
>
> Same problem with both gcc and intel compilers (different VTK CVS
> source tree directories,
> one for gcc one for intel, same ccmake . settings apart from choice
> of compiler)
> (processor making intel and gcc compiler builds at same time, running
> at 75 oC ouch! Normally 63 oC)
>
> Both compliers fail at the linking of Graphics
> with  the same set of  Undefined symbols,
> of which there are many, see below
>
> Is there a problem with CVS for OSX at present, or is it me....?
>
> On the VTK quality dashboards I see no darwin/OSX carbon builds, only
> cocoa builds being submitted
>   (which seems odd since  carbon is the best interface for OSX? right?)
> Why no OSX carbon dashboard?
>
> Any clues anyone?
>
> cheers
>
> Dan
>
>
>
> Building CXX object Graphics/CMakeFiles/vtkGraphics.dir/
> vtkFrustumExtractor.o
> Building CXX object Graphics/CMakeFiles/vtkGraphics.dir/
> vtkGraphicsInstantiator.o
> Linking CXX shared library ../bin/libvtkGraphics.dylib
> ld: Undefined symbols:
> __ZN12vtkAlgorithm10UnRegisterEP13vtkObjectBase
> __ZN12vtkAlgorithm12GetExecutiveEv
> __ZN12vtkAlgorithm12SetExecutiveEP12vtkExecutive
> __ZN12vtkAlgorithm13ModifyRequestEP14vtkInformationi
> __ZN12vtkAlgorithm14SetInformationEP14vtkInformation
> __ZN12vtkAlgorithm14UpdateProgressEd
> __ZN12vtkAlgorithm16ReportReferencesEP19vtkGarbageCollector
> __ZN12vtkAlgorithm17UpdateInformationEv
> __ZN12vtkAlgorithm17UpdateWholeExtentEv
> __ZN12vtkAlgorithm18AddInputConnectionEP18vtkAlgorithmOutput
> __ZN12vtkAlgorithm18AddInputConnectionEiP18vtkAlgorithmOutput
> __ZN12vtkAlgorithm18GetReleaseDataFlagEv
> __ZN12vtkAlgorithm18SetInputConnectionEP18vtkAlgorithmOutput
> __ZN12vtkAlgorithm18SetInputConnectionEiP18vtkAlgorithmOutput
> __ZN12vtkAlgorithm18SetReleaseDataFlagEi
> __ZN12vtkAlgorithm19INPUT_IS_REPEATABLEEv
> __ZN12vtkAlgorithm20ComputePipelineMTimeEP14vtkInformationPP20vtkInforma
> tionVectorS3_iPm
> __ZN12vtkAlgorithm21RemoveInputConnectionEiP18vtkAlgorithmOutput
> __ZN12vtkAlgorithm21SetNthInputConnectionEiiP18vtkAlgorithmOutput
> __ZN12vtkAlgorithm21SetNumberOfInputPortsEi
> __ZN12vtkAlgorithm22CreateDefaultExecutiveEv
> __ZN12vtkAlgorithm22SetNumberOfOutputPortsEi
> __ZN12vtkAlgorithm24INPUT_REQUIRED_DATA_TYPEEv
> __ZN12vtkAlgorithm27GetNumberOfInputConnectionsEi
> __ZN12vtkAlgorithm27SetNumberOfInputConnectionsEii
> __ZN12vtkAlgorithm6UpdateEv
> __ZN12vtkAlgorithm8RegisterEP13vtkObjectBase
> __ZN13vtkDataObject11DATA_OBJECTEv
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> __ZN14vtkInformation3SetEP24vtkInformationIntegerKeyi
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> __ZN20vtkDataSetAttributes12CopyAllocateERNS_9FieldListEii
> __ZN20vtkDataSetAttributes8CopyDataERNS_9FieldListEPS_iii
> __ZN20vtkDataSetAttributes9FieldList18IntersectFieldListEPS_
> __ZN20vtkDataSetAttributes9FieldList19InitializeFieldListEPS_
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> __ZN20vtkDataSetCollection3NewEv
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> __ZN23vtkHyperOctreeAlgorithm16CollectRevisionsERSo
> __ZN23vtkHyperOctreeAlgorithm19RequestUpdateExtentEP14vtkInformationPP20
> vtkInformationVectorS3_
> __ZN23vtkHyperOctreeAlgorithm24FillInputPortInformationEiP14vtkInformati
> on
> __ZN23vtkHyperOctreeAlgorithm25FillOutputPortInformationEiP14vtkInformat
> ion
> __ZN23vtkHyperOctreeAlgorithm7ExecuteEv
> __ZN23vtkHyperOctreeAlgorithm9PrintSelfERSo9vtkIndent
> __ZN23vtkHyperOctreeAlgorithm9SetOutputEP13vtkDataObject
> __ZN23vtkHyperOctreeAlgorithmC2Ev
> __ZN23vtkHyperOctreeAlgorithmD2Ev
> __ZTI23vtkHyperOctreeAlgorithm
> __ZN14vtkInformation3GetEP29vtkInformationDoubleVectorKeyPd
> __ZN17vtkImageAlgorithm11ExecuteDataEP13vtkDataObject
> __ZN17vtkImageAlgorithm14ProcessRequestEP14vtkInformationPP20vtkInformat
> ionVectorS3_
> __ZN17vtkImageAlgorithm16CollectRevisionsERSo
> __ZN17vtkImageAlgorithm17CopyAttributeDataEP12vtkImageDataS1_PP20vtkInfo
> rmationVector
> __ZN17vtkImageAlgorithm18AllocateOutputDataEP12vtkImageDataPi
> __ZN17vtkImageAlgorithm18AllocateOutputDataEP13vtkDataObject
> __ZN17vtkImageAlgorithm19RequestUpdateExtentEP14vtkInformationPP20vtkInf
> ormationVectorS3_
> __ZN17vtkImageAlgorithm25FillOutputPortInformationEiP14vtkInformation
> __ZN17vtkImageAlgorithm32CopyInputArrayAttributesToOutputEP14vtkInformat
> ionPP20vtkInformationVectorS3_
> __ZN17vtkImageAlgorithm7ExecuteEv
> __ZN17vtkImageAlgorithm8AddInputEP13vtkDataObject
> __ZN17vtkImageAlgorithm8AddInputEiP13vtkDataObject
> __ZN17vtkImageAlgorithm9PrintSelfERSo9vtkIndent
> __ZN17vtkImageAlgorithm9SetOutputEP13vtkDataObject
> __ZN17vtkImageAlgorithmC2Ev
> __ZN17vtkImageAlgorithmD2Ev
> __ZTI17vtkImageAlgorithm
> __ZN7vtkCell10GetLength2Ev
> __ZN12vtkExecutive19GetInputInformationEii
> __ZN13vtkDataObject18ShouldIReleaseDataEv
> __ZN20vtkDataSetAttributes15InterpolateTimeEPS_S0_id
> __ZN10vtkLocator10InitializeEv
> __ZN10vtkLocator10UnRegisterEP13vtkObjectBase
> __ZN10vtkLocator16CollectRevisionsERSo
> __ZN10vtkLocator16ReportReferencesEP19vtkGarbageCollector
> __ZN10vtkLocator6UpdateEv
> __ZN10vtkLocator8RegisterEP13vtkObjectBase
> __ZN10vtkLocator9PrintSelfERSo9vtkIndent
> __ZN10vtkLocatorC2Ev
> __ZN10vtkLocatorD2Ev
> __ZTI10vtkLocator
> __ZN27vtkMarchingSquaresLineCases8GetCasesEv
> __ZN20vtkDataSetAttributes16SetCopyAttributeEiii
> __ZN20vtkPolyDataAlgorithm8GetInputEi
> __ZN12vtkFieldData17GetNumberOfTuplesEv
> __ZN19vtkDataSetAlgorithm8SetInputEiP13vtkDataObject
> __ZN8vtkTetra13ComputeVolumeEPdS0_S0_S0_
> __ZN14vtkInformation3SetEP27vtkInformationObjectBaseKeyP13vtkObjectBase
> __ZN14vtkInformation4CopyEPS_i
> __ZN19vtkCompositeDataSet18COMPOSITE_DATA_SETEv
> __ZN20vtkMultiGroupDataSet10GetDataSetEjj
> __ZN20vtkMultiGroupDataSet10SetDataSetEjjP13vtkDataObject
> __ZN20vtkMultiGroupDataSet17GetNumberOfGroupsEv
> __ZN20vtkMultiGroupDataSet17SetNumberOfGroupsEj
> __ZN20vtkMultiGroupDataSet19GetNumberOfDataSetsEj
> __ZN20vtkMultiGroupDataSet19SetNumberOfDataSetsEjj
> __ZN20vtkMultiGroupDataSet28SetMultiGroupDataInformationEP28vtkMultiGrou
> pDataInformation
> __ZN24vtkCompositeDataPipeline26COMPOSITE_DATA_INFORMATIONEv
> __ZN25vtkHierarchicalBoxDataSet18GetRefinementRatioEj
> __ZN25vtkHierarchicalBoxDataSet18SetRefinementRatioEji
> __ZN25vtkHierarchicalBoxDataSet24GenerateVisibilityArraysEv
> __ZN28vtkMultiGroupDataInformation14GetInformationEjj
> __ZN28vtkMultiGroupDataInformation14HasInformationEjj
> __ZN28vtkMultiGroupDataInformation17GetNumberOfGroupsEv
> __ZN28vtkMultiGroupDataInformation17SetNumberOfGroupsEj
> __ZN28vtkMultiGroupDataInformation19GetNumberOfDataSetsEj
> __ZN28vtkMultiGroupDataInformation19SetNumberOfDataSetsEjj
> __ZN28vtkMultiGroupDataInformation3NewEv
> __ZN29vtkMultiGroupDataSetAlgorithm16CollectRevisionsERSo
> __ZN29vtkMultiGroupDataSetAlgorithm9PrintSelfERSo9vtkIndent
> __ZN29vtkMultiGroupDataSetAlgorithmC2Ev
> __ZTI29vtkMultiGroupDataSetAlgorithm
> __ZTV29vtkMultiGroupDataSetAlgorithm
> __ZN24vtkCompositeDataPipeline34INPUT_REQUIRED_COMPOSITE_DATA_TYPEEv
> __ZN24vtkCompositeDataPipeline3NewEv
> __ZN10vtkLocator10SetDataSetEP10vtkDataSet
> __ZN14vtkCellLocator16CollectRevisionsERSo
> __ZN14vtkCellLocator18GetNumberOfBucketsEv
> __ZN14vtkCellLocator8GetCellsEi
> __ZN14vtkCellLocator9PrintSelfERSo9vtkIndent
> __ZN14vtkCellLocatorC2Ev
> __ZN14vtkCellLocatorD2Ev
> __ZN7vtkLine12IntersectionEPdS0_S0_S0_RdS1_
> __ZN7vtkLine14DistanceToLineEPdS0_S0_RdS0_
> __ZTI14vtkCellLocator
> __ZN11vtkPolyData11ReverseCellEi
> __ZN12vtkImageData13SetScalarTypeEi
> __ZN12vtkImageData27SetNumberOfScalarComponentsEi
> __ZN14vtkInformation9CopyEntryEPS_P29vtkInformationDoubleVectorKeyi
> __ZN13vtkDataObject3NewEv
> __ZN19vtkDataSetAlgorithm8GetInputEv
> __ZN11vtkTriangle14ComputeQuadricEPdS0_S0_PA4_d
> __ZN13vtkDataObject20DataHasBeenGeneratedEv
> __ZN11vtkPolyData11DeleteLinksEv
> __ZN11vtkPolyData5ResetEv
> __ZN11vtkPolyData9CopyCellsEPS_P9vtkIdListP15vtkPointLocator
> __ZN13vtkDataObject19GetExtentTranslatorEv
> __ZN27vtkRectilinearGridAlgorithm8GetInputEv
> __ZN8vtkVoxel22InterpolationFunctionsEPdS0_
> __ZN11vtkPolyLine22GenerateSlidingNormalsEP9vtkPointsP12vtkCellArrayP12v
> tkDataArray
> __ZN11vtkPolyLine3NewEv
> __ZN19vtkUnstructuredGrid7GetDataEP20vtkInformationVectori
> __ZN14vtkCellLocator16FindClosestPointEPdS0_RiS1_Rd
> __ZN14vtkCellLocator3NewEv
> __ZN16vtkProcessObject11RemoveInputEP13vtkDataObject
> __ZN16vtkProcessObject11SetNthInputEiP13vtkDataObject
> __ZN16vtkProcessObject18AddInputConnectionEiP18vtkAlgorithmOutput
> __ZN16vtkProcessObject18SetInputConnectionEiP18vtkAlgorithmOutput
> __ZN16vtkProcessObject21RemoveInputConnectionEiP18vtkAlgorithmOutput
> __ZN16vtkProcessObject21SetNthInputConnectionEiiP18vtkAlgorithmOutput
> __ZN16vtkProcessObject24FillInputPortInformationEiP14vtkInformation
> __ZN16vtkProcessObject27SetNumberOfInputConnectionsEii
> __ZN16vtkProcessObject8AddInputEP13vtkDataObject
> __ZN17vtkPolyDataSource16CollectRevisionsERSo
> __ZN17vtkPolyDataSource25ComputeInputUpdateExtentsEP13vtkDataObject
> __ZN17vtkPolyDataSource25FillOutputPortInformationEiP14vtkInformation
> __ZN17vtkPolyDataSource9GetOutputEv
> __ZN17vtkPolyDataSource9PrintSelfERSo9vtkIndent
> __ZN17vtkPolyDataSourceC2Ev
> __ZN9vtkSource10UpdateDataEP13vtkDataObject
> __ZN9vtkSource11ExecuteDataEP13vtkDataObject
> __ZN9vtkSource12RemoveOutputEP13vtkDataObject
> __ZN9vtkSource12SetExecutiveEP12vtkExecutive
> __ZN9vtkSource12SetNthOutputEiP13vtkDataObject
> __ZN9vtkSource14ProcessRequestEP14vtkInformationPP20vtkInformationVector
> S3_
> __ZN9vtkSource16ReportReferencesEP19vtkGarbageCollector
> __ZN9vtkSource17UpdateInformationEv
> __ZN9vtkSource17UpdateWholeExtentEv
> __ZN9vtkSource18ExecuteInformationEv
> __ZN9vtkSource18GetReleaseDataFlagEv
> __ZN9vtkSource18SetReleaseDataFlagEi
> __ZN9vtkSource20MarkGeneratedOutputsEP13vtkDataObject
> __ZN9vtkSource21PropagateUpdateExtentEP13vtkDataObject
> __ZN9vtkSource22SetNumberOfOutputPortsEi
> __ZN9vtkSource25TriggerAsynchronousUpdateEv
> __ZN9vtkSource6UpdateEv
> __ZN9vtkSource9AddOutputEP13vtkDataObject
> __ZN9vtkSourceD2Ev
> __ZTI17vtkPolyDataSource
> __ZTV17vtkPolyDataSource
> __ZN20vtkPointSetAlgorithm9GetOutputEv
> __ZN14vtkInformation3SetEP29vtkInformationDoubleVectorKeydddddd
> __ZN32vtkStreamingDemandDrivenPipeline18WHOLE_BOUNDING_BOXEv
> __ZN17vtkCardinalSpline3NewEv
> __ZN9vtkSpline15RemoveAllPointsEv
> __ZN9vtkSpline8AddPointEdd
> __ZN11vtkPolyLine22GenerateSlidingNormalsEP9vtkPointsP12vtkCellArrayP12v
> tkDataArrayPd
> __ZN12vtkAlgorithm22GetInputArrayToProcessEiP13vtkDataObject
> __ZN20vtkDataSetAttributes10GetVectorsEPKc
> __ZN20vtkMultiBlockDataSet3NewEv
> __ZN28vtkInterpolatedVelocityField14GetLastWeightsEPd
> __ZN28vtkInterpolatedVelocityField23GetLastLocalCoordinatesEPd
> __ZN28vtkInterpolatedVelocityField3NewEv
> __ZN12vtkFieldData13CopyStructureEPS_
> __ZN12vtkFieldData15InsertNextTupleEiPS_
> __ZN12vtkFieldData7SqueezeEv
> __ZN12vtkFieldData8AllocateEii
> __ZN26vtkStructuredGridAlgorithm8GetInputEv
> __ZN17vtkStructuredGrid14IsPointVisibleEi
> __ZN19vtkUnstructuredGrid13IsHomogeneousEv
> __ZN12vtkImageData24GetArrayPointerForExtentEP12vtkDataArrayPi
> __ZN10vtkPolygon11TriangulateEP9vtkIdList
> __ZN17vtkQuadraticTetra12GetFaceArrayEi
> __ZN17vtkQuadraticWedge12GetFaceArrayEi
> __ZN19vtkQuadraticPyramid12GetFaceArrayEi
> __ZN22vtkQuadraticHexahedron12GetFaceArrayEi
> __ZN23vtkQuadraticLinearWedge12GetFaceArrayEi
> __ZN25vtkTriQuadraticHexahedron12GetFaceArrayEi
> __ZN28vtkBiQuadraticQuadraticWedge12GetFaceArrayEi
> __ZN33vtkBiQuadraticQuadraticHexahedron12GetFaceArrayEi
> __ZN10vtkDataSet9GetCenterEv
> /usr/bin/libtool: internal link edit command failed
> make[2]: *** [bin/libvtkGraphics.dylib.5.1.0] Error 1
> make[1]: *** [Graphics/CMakeFiles/vtkGraphics.dir/all] Error 2
> make: *** [all] Error 2
>
>
>
> Dr. Daniel James White BSc. (Hons.) PhD
> Bioimaging Coordinator
> Nanoscience Centre and Department of Biological and Environmental
> Sciences
> Division of Molecular Recognition
> Ambiotica C242
> PO Box 35
> University of Jyv�skyl�
> Jyv�skyl�
> FIN 40014
> Finland
>
> +358 14 260 4183 (work)
> +358 468102840 (mobile)
> http://www.bioimagexd.org
> http://www.chalkie.org.uk
> dan at chalkie.org.uk
> white at cc.jyu.fi
>
>
> _______________________________________________
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