[vtkusers] VTK Build Problems

Tue Jun 28 17:49:41 EDT 2005

Jeremy -

If you don't mind, let me know how your compiled MPI works with VTK. 
My build is bombing out with some unresolved symbols in the TCL
portion of the build.  If yours works, could you post your compile
flags for the MPI build?

Thanks!
Ken

On 6/27/05, Jeremy Stout <stout.jeremy at gmail.com> wrote:
> Thanks for the tips on the Library path, I'll try that out. As for
> MPI, I recompiled it with -fPIC before writing my first mail. The
> compiler didn't give me any error messages when I used that flag, so I
> am going to assume that worked.
> 
> Jeremy Stout
> 
> On 6/27/05, Kenneth Gage <kenneth.gage at gmail.com> wrote:
> > Jeremy -
> >
> > To get the latest 64-bit sun Java to work, I had to the add the
> > following paths like so under bash
> >
> > $>LD_LIBRARY_PATH=/path/to/jdk/jdk1.5.0_04/jre/lib/amd64/xawt:/path/to/jdk/jdk1.5.0_04/jre/lib/amd64/server
> > $>export LD_LIBRARY_PATH
> >
> > You can then run make and make install.
> >
> > The xawt directory will allow libmawt.so to be found and the server
> > directory allows libjvm.so to be found.
> >
> > The -fPIC warning you see on the MPI stuff means that the MPI
> > libraries need to be recompiled with -fPIC in the compiler directives.
> >  Unfortunately, you will received the same result using the included
> > LAM-MPI libraries (to the best of my knowledge, I'm using FC4) so at
> > this point it looks like recompiling some MPI flavor is the only
> > option.
> >
> >
> > HTH -
> >
> > Ken
> >
> >
> > On 6/27/05, Jeremy Stout <stout.jeremy at gmail.com> wrote:
> > > I am trying to build the nightly version of VTK on a Fedora Core 3
> > > X86_64 system with MPI, Parallel, and Java support. I am able to get
> > > it to compile with MPI, but as I turn on the Java switch, problems
> > > start to arise. Here is a summary of the error messages I am getting:
> > >
> > > With i586 version of Java/No MPI/with VTK_USE_PARALLEL:
> > > Building shared library /home/stout/vtk/bin/libvtkRenderingJava.so...
> > > /usr/bin/ld: skipping incompatible
> > > /home/stout/jdk1.5.0_04/jre/lib/i386/libjawt.so when searching for
> > > -ljawt
> > > /usr/bin/ld: cannot find -ljawt
> > > collect2: ld returned 1 exit status
> > > make[3]: *** [/home/stout/vtk/bin/libvtkRenderingJava.so] Error 1
> > > make[2]: *** [default_target] Error 2
> > > make[1]: *** [default_target_Rendering] Error 2
> > > make: *** [default_target] Error 2
> > >
> > > With AM64 version of Java/MPI/with VTK_USE_PARALLEL:
> > > Building shared library /home/stout/vtk/bin/libvtkParallelJava.so...
> > > /usr/bin/ld: /usr/local/common/mpich/lib/libmpich.a(initfcmn.o):
> > > relocation R_X86_64_32 against `mpipriv_' can not be used when making
> > > a shared object; recompile with -fPIC
> > > /usr/local/common/mpich/lib/libmpich.a: could not read symbols: Bad value
> > > collect2: ld returned 1 exit status
> > > make[3]: *** [/home/stout/vtk/bin/libvtkParallelJava.so] Error 1
> > > make[2]: *** [default_target] Error 2
> > > make[1]: *** [default_target_Parallel] Error 2
> > > make: *** [default_target] Error 2
> > >
> > > With AMD 64 version of Java/No MPI/with VTK_USE_PARALLEL:
> > > /home/stout/vtk/Wrapping/Java: building default_target
> > > Building dependencies. cmake.depends...
> > > Building object file VTKJava.o...
> > > Building executable /home/stout/vtk/bin/VTKJavaExecutable...
> > > /usr/bin/ld: warning: libmawt.so, needed by
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjawt.so, not found (try
> > > using -rpath or -rpath-link)
> > > /usr/bin/ld: warning: libjvm.so, needed by
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjawt.so, not found (try
> > > using -rpath or
> > > -rpath-link)/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to `JVM_MaxObjectInspectionAge at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_Halt at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_ClassLoaderDepth at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_GetClassDeclaredConstructors at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so:
> > > undefined reference to
> > > `JVM_GetCPMethodNameUTF at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to `JVM_LatestUserDefinedLoader at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_Read at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so:
> > > undefined reference to
> > > `JVM_GetMethodIxModifiers at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_FindSignal at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_GetStackTraceElement at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so:
> > > undefined reference to `JVM_GetClassMethodsCount at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so: undefined
> > > reference to `JVM_GetClassMethodsCount at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so: undefined
> > > reference to `JVM_IsSameClassPackage at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_SetArrayElement at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_IHashCode at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_GetClassConstantPool at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_GetDeclaredClasses at SUNWprivate_1.1'
> > > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > > reference to `JVM_UnloadLibrary at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_Close at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_CompilerCommand at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_RegisterSignal at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to
> > > `JVM_ConstantPoolGetClassAt at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > > undefined reference to `JVM_Interrupt at SUNWprivate_1.1'
> > > *insert numerous other error messages*
> > >
> > > With AM64 version of Java/MPI/without VTK_USE_PARALLEL:
> > > Same set of error message as the previous example
> > >
> > > I edited my LD_LIBRARY_PATH variable to point to the /lib/amd64/ java
> > > libraries, but didn't seem to affect anything. Any help in this matter
> > > would be appreciated.
> > >
> > > Jeremy Stout
> > > _______________________________________________
> > > This is the private VTK discussion list.
> > > Please keep messages on-topic. Check the FAQ at: http://www.vtk.org/Wiki/VTK_FAQ
> > > Follow this link to subscribe/unsubscribe:
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> > >
> >
> >
> > --
> > Kenneth Gage
> > MD-PhD Student
> > McGowan Institute for Regenerative Medicine
> > University of Pittsburgh
> > Pittsburgh, PA 15203-2155
> >
> 

-- 
Kenneth Gage
MD-PhD Student
McGowan Institute for Regenerative Medicine
University of Pittsburgh
Pittsburgh, PA 15203-2155