[vtkusers] VTK Build Problems

[Jeremy Stout]

Thanks for the tips on the Library path, I'll try that out. As for
MPI, I recompiled it with -fPIC before writing my first mail. The
compiler didn't give me any error messages when I used that flag, so I
am going to assume that worked.

Jeremy Stout

On 6/27/05, Kenneth Gage <kenneth.gage at gmail.com> wrote:
> Jeremy -
> 
> To get the latest 64-bit sun Java to work, I had to the add the
> following paths like so under bash
> 
> $>LD_LIBRARY_PATH=/path/to/jdk/jdk1.5.0_04/jre/lib/amd64/xawt:/path/to/jdk/jdk1.5.0_04/jre/lib/amd64/server
> $>export LD_LIBRARY_PATH
> 
> You can then run make and make install.
> 
> The xawt directory will allow libmawt.so to be found and the server
> directory allows libjvm.so to be found.
> 
> The -fPIC warning you see on the MPI stuff means that the MPI
> libraries need to be recompiled with -fPIC in the compiler directives.
>  Unfortunately, you will received the same result using the included
> LAM-MPI libraries (to the best of my knowledge, I'm using FC4) so at
> this point it looks like recompiling some MPI flavor is the only
> option.
> 
> 
> HTH -
> 
> Ken
> 
> 
> On 6/27/05, Jeremy Stout <stout.jeremy at gmail.com> wrote:
> > I am trying to build the nightly version of VTK on a Fedora Core 3
> > X86_64 system with MPI, Parallel, and Java support. I am able to get
> > it to compile with MPI, but as I turn on the Java switch, problems
> > start to arise. Here is a summary of the error messages I am getting:
> >
> > With i586 version of Java/No MPI/with VTK_USE_PARALLEL:
> > Building shared library /home/stout/vtk/bin/libvtkRenderingJava.so...
> > /usr/bin/ld: skipping incompatible
> > /home/stout/jdk1.5.0_04/jre/lib/i386/libjawt.so when searching for
> > -ljawt
> > /usr/bin/ld: cannot find -ljawt
> > collect2: ld returned 1 exit status
> > make[3]: *** [/home/stout/vtk/bin/libvtkRenderingJava.so] Error 1
> > make[2]: *** [default_target] Error 2
> > make[1]: *** [default_target_Rendering] Error 2
> > make: *** [default_target] Error 2
> >
> > With AM64 version of Java/MPI/with VTK_USE_PARALLEL:
> > Building shared library /home/stout/vtk/bin/libvtkParallelJava.so...
> > /usr/bin/ld: /usr/local/common/mpich/lib/libmpich.a(initfcmn.o):
> > relocation R_X86_64_32 against `mpipriv_' can not be used when making
> > a shared object; recompile with -fPIC
> > /usr/local/common/mpich/lib/libmpich.a: could not read symbols: Bad value
> > collect2: ld returned 1 exit status
> > make[3]: *** [/home/stout/vtk/bin/libvtkParallelJava.so] Error 1
> > make[2]: *** [default_target] Error 2
> > make[1]: *** [default_target_Parallel] Error 2
> > make: *** [default_target] Error 2
> >
> > With AMD 64 version of Java/No MPI/with VTK_USE_PARALLEL:
> > /home/stout/vtk/Wrapping/Java: building default_target
> > Building dependencies. cmake.depends...
> > Building object file VTKJava.o...
> > Building executable /home/stout/vtk/bin/VTKJavaExecutable...
> > /usr/bin/ld: warning: libmawt.so, needed by
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjawt.so, not found (try
> > using -rpath or -rpath-link)
> > /usr/bin/ld: warning: libjvm.so, needed by
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjawt.so, not found (try
> > using -rpath or
> > -rpath-link)/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to `JVM_MaxObjectInspectionAge at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_Halt at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_ClassLoaderDepth at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_GetClassDeclaredConstructors at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so:
> > undefined reference to
> > `JVM_GetCPMethodNameUTF at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to `JVM_LatestUserDefinedLoader at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_Read at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so:
> > undefined reference to
> > `JVM_GetMethodIxModifiers at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_FindSignal at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_GetStackTraceElement at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so:
> > undefined reference to `JVM_GetClassMethodsCount at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so: undefined
> > reference to `JVM_GetClassMethodsCount at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libverify.so: undefined
> > reference to `JVM_IsSameClassPackage at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_SetArrayElement at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_IHashCode at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_GetClassConstantPool at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_GetDeclaredClasses at SUNWprivate_1.1'
> > /usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so: undefined
> > reference to `JVM_UnloadLibrary at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_Close at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_CompilerCommand at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_RegisterSignal at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to
> > `JVM_ConstantPoolGetClassAt at SUNWprivate_1.1'/usr/local/common/jdk1.5.0_03/jre/lib/amd64/libjava.so:
> > undefined reference to `JVM_Interrupt at SUNWprivate_1.1'
> > *insert numerous other error messages*
> >
> > With AM64 version of Java/MPI/without VTK_USE_PARALLEL:
> > Same set of error message as the previous example
> >
> > I edited my LD_LIBRARY_PATH variable to point to the /lib/amd64/ java
> > libraries, but didn't seem to affect anything. Any help in this matter
> > would be appreciated.
> >
> > Jeremy Stout
> > _______________________________________________
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> >
> 
> 
> --
> Kenneth Gage
> MD-PhD Student
> McGowan Institute for Regenerative Medicine
> University of Pittsburgh
> Pittsburgh, PA 15203-2155
>