[Tubetk-developers] runtime error

Stephen Aylward stephen.aylward at kitware.com
Sun Feb 2 19:47:39 EST 2014 

Ah.  It shouldn't be asking for qmake.  It should get that from the slicer
build info.

Perhaps it is mixing a system qt with the version used to build slicer.  We
have tested that in the past,  but it might not be working now.

If you type "which qmake" does it return a path to another qmake?

S
--
Sent via phone.  Please excuse the brevity and typos.

--
Stephen R. Aylward, Ph.D.
Senior Director of Operations
Kitware, North Carolina
On Feb 2, 2014 6:42 PM, "Wei Liu" <weiliu620 at gmail.com> wrote:

> Christopher,
>
> Here is what I found under the QT SDK directory that I downloaded from
> Slicer website:
>
> weiliu at wukong:~/QtSDK/Desktop/Qt/474/gcc/lib> ll libQtWebKit.*
> -rw-r--r-- 1 weiliu sci      934 Jan 22 10:29 libQtWebKit.la
> lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so ->
> libQtWebKit.so.4.7.4
> lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so.4 ->
> libQtWebKit.so.4.7.4
> lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so.4.7 ->
> libQtWebKit.so.4.7.4
> -rwxr-xr-x 1 weiliu sci 22791816 Jan 22 10:29 libQtWebKit.so.4.7.4
>
> In the ccmake of TubeTK, if I just set Slicer build directory in order to
> build Slicer extension, I got error that says qmake should be same with the
> one that is used to build Slicer. So I point the qmake to the one under QT
> SDK. The configuration then goes through, so I suppose the setting is
> correct.
>
> Wei
>
>
> On Sun, Feb 2, 2014 at 4:32 PM, Christopher Mullins <
> christopher.mullins at kitware.com> wrote:
>
>> Can you confirm that you built or installed Qt with webkit?  You should
>> have the file libQtWebKit.so somewhere in the build tree or installation
>> directory.  Also make sure your QT_QMAKE_EXECUTABLE is set correctly.
>>
>>
>> On Sun, Feb 2, 2014 at 5:40 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>>
>>> Stephen,
>>>
>>> I did what you suggested. However, after step 3) and choose 'configure'
>>> in ccmake, I got the same error message that I reported to you in a
>>> different email thread.  The error is:
>>>
>>>  CMake Error at
>>> /home/sci/weiliu/packages/Slicer/CMake/SlicerBlockFindQtAndCheckVersion.cmake:43
>>> (message):
>>>    error: Missing Qt module QTWEBKIT
>>>  Call Stack (most recent call first):
>>>
>>>  /home/sci/weiliu/packages/Slicer/CMake/SlicerBlockFindQtAndCheckVersion.cmake:72
>>> (__SlicerBlockFindQtAndCheckVersion_find_qt)
>>>
>>>  /home/sci/weiliu/projects/Slicer-SuperBuild-Rel/Slicer-build/SlicerConfig.cmake:760
>>> (include)
>>>    CMakeLists.txt:175 (find_package)
>>>
>>>
>>> I've made sure that I start from an empty build directory. By the way,
>>> my Slicer build is a good one. I used a customized QT SDK (version 474)
>>> from [1].
>>>
>>> [1]
>>> http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_Instructions/Prerequisites/Qt#Download_Qt:_Source_and_Binaries
>>>
>>> Wei
>>>
>>>
>>> On Sun, Feb 2, 2014 at 1:40 PM, Stephen Aylward <
>>> stephen.aylward at kitware.com> wrote:
>>>
>>>> Only options to change are
>>>>
>>>> 1) TubeTK_BUILD_SLICER_EXTENSION = ON
>>>> 2) TubeTK_USE_SLICER = ON
>>>>
>>>> Then type [c] to configure.  This will produce an error message if
>>>> Slicer isn't automatically found...so
>>>>
>>>> 3) Slicer_DIR = <YourPathToSlicerBuild>/Slicer-build
>>>> -- Yes, point it to the Slicer-build subdir that is within the
>>>> top-level directory in which Slicer was built.
>>>>
>>>> Do not change any other options.
>>>>
>>>> You should do this in an empty build directory.  There are likely to
>>>> be problems if you try to switch a current build from being a
>>>> stand-alone build to being a Slicer-dependent build.
>>>>
>>>> s
>>>>
>>>>
>>>> On Sun, Feb 2, 2014 at 2:49 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>>>> > Thanks, Matt and Stephen. I checked the CmakeOutput.log file under
>>>> VTK-build
>>>> > and didn't find any errors. Is that the best way to check build logs?
>>>> >
>>>> > I do have a recent Slicer build that includes VTK. Let me try to point
>>>> > TubeTK to it and see what happens.
>>>> >
>>>> > Wei
>>>> >
>>>> >
>>>> > On Sun, Feb 2, 2014 at 12:34 PM, Stephen Aylward
>>>> > <stephen.aylward at kitware.com> wrote:
>>>> >>
>>>> >> Also, Ricardo is building it on opensuse.   It seems to be failing
>>>> on the
>>>> >> vtk build.  Perhaps try building vtk on its own via vtk.org or
>>>> build slicer
>>>> >> and point tubetk to it...see slicer.org
>>>> >>
>>>> >> S
>>>> >>
>>>> >> --
>>>> >> Sent via phone.  Please excuse the brevity and typos.
>>>> >>
>>>> >> --
>>>> >> Stephen R. Aylward, Ph.D.
>>>> >> Senior Director of Operations
>>>> >> Kitware, North Carolina
>>>> >>
>>>> >> On Feb 2, 2014 2:31 PM, "Matt McCormick" <matt.mccormick at kitware.com
>>>> >
>>>> >> wrote:
>>>> >>>
>>>> >>> Hi Wei,
>>>> >>>
>>>> >>> Builds reporting to the dashboard should be reproducible (there is
>>>> >>> Debian Stable and Ubuntu 12.04 and 13.04 reporting):
>>>> >>>
>>>> >>>   http://open.cdash.org/index.php?project=TubeTK
>>>> >>>
>>>> >>> If further help is needed, we can give personalized attention with a
>>>> >>> support contract:
>>>> >>>
>>>> >>>   http://www.kitware.com/products/support.html
>>>> >>>
>>>> >>> Thanks,
>>>> >>> Matt
>>>> >>>
>>>> >>> On Sun, Feb 2, 2014 at 11:51 AM, Wei Liu <weiliu620 at gmail.com>
>>>> wrote:
>>>> >>> > Oops, I sent previous email before finishing it.
>>>> >>> >
>>>> >>> > Yes Matt, I meant TubeTK_USE_VTK.  So, I started a clean build,
>>>> with
>>>> >>> > all
>>>> >>> > cmake options set to default (the UtbeT_USE_VTK = ON). Now I have
>>>> >>> > different
>>>> >>> > errors:
>>>> >>> >
>>>> >>> > ./CropImage: symbol lookup error:
>>>> >>> >
>>>> >>> >
>>>> /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>>> >>> > undefined symbol: _ZTI8vtkArray
>>>> >>> >
>>>> >>> > I don't remember the exact difference between this build and the
>>>> >>> > previous
>>>> >>> > one. The difference may be some Cmake options.
>>>> >>> >
>>>> >>> > Do you suggest me to use another OS, like ubuntu or Redhat-based
>>>> OS?
>>>> >>> >
>>>> >>> > Wei
>>>> >>> >
>>>> >>> >
>>>> >>> >
>>>> >>> > On Fri, Jan 31, 2014 at 5:46 PM, Matt McCormick
>>>> >>> > <matt.mccormick at kitware.com>
>>>> >>> > wrote:
>>>> >>> >>
>>>> >>> >> Hmm, the only variable that should be adjusted should be called
>>>> >>> >> TubeTK_USE_VTK.
>>>> >>> >>
>>>> >>> >> Starting a clean build with the defaults is good first step.
>>>> >>> >>
>>>> >>> >> Thanks,
>>>> >>> >> Matt
>>>> >>> >>
>>>> >>> >> On Fri, Jan 31, 2014 at 7:35 PM, Wei Liu <weiliu620 at gmail.com>
>>>> wrote:
>>>> >>> >> > Matt,
>>>> >>> >> >
>>>> >>> >> > I didn't install VTK in the system, and I double checked the
>>>> >>> >> > /usr/lib
>>>> >>> >> > and
>>>> >>> >> > lib64 directory.
>>>> >>> >> >
>>>> >>> >> > I built with the USE_VTK set to off. Is that a possible
>>>> reason? I'm
>>>> >>> >> > re-building TubeTK with it on now.
>>>> >>> >> >
>>>> >>> >> > Wei
>>>> >>> >> >
>>>> >>> >> >
>>>> >>> >> >
>>>> >>> >> >
>>>> >>> >> > On Fri, Jan 31, 2014 at 4:08 PM, Matt McCormick
>>>> >>> >> > <matt.mccormick at kitware.com>
>>>> >>> >> > wrote:
>>>> >>> >> >>
>>>> >>> >> >> Hi Wei,
>>>> >>> >> >>
>>>> >>> >> >> This is not expected.  Is a system VTK installed?
>>>> >>> >> >>
>>>> >>> >> >> Thanks,
>>>> >>> >> >> Matt
>>>> >>> >> >>
>>>> >>> >> >>
>>>> >>> >> >>
>>>> >>> >> >> On Fri, Jan 31, 2014 at 5:58 PM, Wei Liu <weiliu620 at gmail.com
>>>> >
>>>> >>> >> >> wrote:
>>>> >>> >> >> > Dear TubeTK developers,
>>>> >>> >> >> >
>>>> >>> >> >> > I've successfully built TubeTK in release mode. But when I
>>>> try to
>>>> >>> >> >> > run
>>>> >>> >> >> > one of
>>>> >>> >> >> > the commands in TubeTK-build/bin/ I got the following error:
>>>> >>> >> >> >
>>>> >>> >> >> > ./CropImage: symbol lookup error:
>>>> >>> >> >> >
>>>> >>> >> >> >
>>>> >>> >> >> >
>>>> >>> >> >> >
>>>> /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>>> >>> >> >> > undefined symbol: _ZTI21vtkArrayDataAlgorithm
>>>> >>> >> >> >
>>>> >>> >> >> > I'm using gcc 4.7.1 under opensuse 12.2 64 bit. And I just
>>>> let
>>>> >>> >> >> > tubetk
>>>> >>> >> >> > to
>>>> >>> >> >> > build everything including ITK and VTK. Actually I got the
>>>> same
>>>> >>> >> >> > error
>>>> >>> >> >> > when
>>>> >>> >> >> > trying to run other commands.
>>>> >>> >> >> >
>>>> >>> >> >> > Is this error expected at this stage of development?
>>>> >>> >> >> >
>>>> >>> >> >> > Thanks,
>>>> >>> >> >> > Wei
>>>> >>> >> >> >
>>>> >>> >> >> > _______________________________________________
>>>> >>> >> >> > Tubetk-developers mailing list
>>>> >>> >> >> > Tubetk-developers at tubetk.org
>>>> >>> >> >> >
>>>> >>> >> >> >
>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>>> >>> >> >> >
>>>> >>> >> >
>>>> >>> >> >
>>>> >>> >
>>>> >>> >
>>>> >>> _______________________________________________
>>>> >>> Tubetk-developers mailing list
>>>> >>> Tubetk-developers at tubetk.org
>>>> >>>
>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>>> >
>>>> >
>>>>
>>>>
>>>>
>>>> --
>>>>
>>>> ====================================================
>>>> Stephen R. Aylward, Ph.D.
>>>> Senior Director of Operations, North Carolina, Kitware, Inc.
>>>> http://www.kitware.com
>>>> http://www.aylward.org
>>>> (919) 969-6990 x300
>>>> ====================================================
>>>>
>>>
>>>
>>> _______________________________________________
>>> Tubetk-developers mailing list
>>> Tubetk-developers at tubetk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>>
>>>
>>
>>
>> --
>> Christopher Mullins
>> R&D Engineer
>> Kitware Inc.,
>> 919.869.8871
>>
>
>
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