[Tubetk-developers] runtime error

Wei Liu weiliu620 at gmail.com
Sun Feb 2 18:42:47 EST 2014 

Christopher,

Here is what I found under the QT SDK directory that I downloaded from
Slicer website:

weiliu at wukong:~/QtSDK/Desktop/Qt/474/gcc/lib> ll libQtWebKit.*
-rw-r--r-- 1 weiliu sci      934 Jan 22 10:29 libQtWebKit.la
lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so ->
libQtWebKit.so.4.7.4
lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so.4 ->
libQtWebKit.so.4.7.4
lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so.4.7 ->
libQtWebKit.so.4.7.4
-rwxr-xr-x 1 weiliu sci 22791816 Jan 22 10:29 libQtWebKit.so.4.7.4

In the ccmake of TubeTK, if I just set Slicer build directory in order to
build Slicer extension, I got error that says qmake should be same with the
one that is used to build Slicer. So I point the qmake to the one under QT
SDK. The configuration then goes through, so I suppose the setting is
correct.

Wei


On Sun, Feb 2, 2014 at 4:32 PM, Christopher Mullins <
christopher.mullins at kitware.com> wrote:

> Can you confirm that you built or installed Qt with webkit?  You should
> have the file libQtWebKit.so somewhere in the build tree or installation
> directory.  Also make sure your QT_QMAKE_EXECUTABLE is set correctly.
>
>
> On Sun, Feb 2, 2014 at 5:40 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>
>> Stephen,
>>
>> I did what you suggested. However, after step 3) and choose 'configure'
>> in ccmake, I got the same error message that I reported to you in a
>> different email thread.  The error is:
>>
>>  CMake Error at
>> /home/sci/weiliu/packages/Slicer/CMake/SlicerBlockFindQtAndCheckVersion.cmake:43
>> (message):
>>    error: Missing Qt module QTWEBKIT
>>  Call Stack (most recent call first):
>>
>>  /home/sci/weiliu/packages/Slicer/CMake/SlicerBlockFindQtAndCheckVersion.cmake:72
>> (__SlicerBlockFindQtAndCheckVersion_find_qt)
>>
>>  /home/sci/weiliu/projects/Slicer-SuperBuild-Rel/Slicer-build/SlicerConfig.cmake:760
>> (include)
>>    CMakeLists.txt:175 (find_package)
>>
>>
>> I've made sure that I start from an empty build directory. By the way, my
>> Slicer build is a good one. I used a customized QT SDK (version 474) from
>> [1].
>>
>> [1]
>> http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_Instructions/Prerequisites/Qt#Download_Qt:_Source_and_Binaries
>>
>> Wei
>>
>>
>> On Sun, Feb 2, 2014 at 1:40 PM, Stephen Aylward <
>> stephen.aylward at kitware.com> wrote:
>>
>>> Only options to change are
>>>
>>> 1) TubeTK_BUILD_SLICER_EXTENSION = ON
>>> 2) TubeTK_USE_SLICER = ON
>>>
>>> Then type [c] to configure.  This will produce an error message if
>>> Slicer isn't automatically found...so
>>>
>>> 3) Slicer_DIR = <YourPathToSlicerBuild>/Slicer-build
>>> -- Yes, point it to the Slicer-build subdir that is within the
>>> top-level directory in which Slicer was built.
>>>
>>> Do not change any other options.
>>>
>>> You should do this in an empty build directory.  There are likely to
>>> be problems if you try to switch a current build from being a
>>> stand-alone build to being a Slicer-dependent build.
>>>
>>> s
>>>
>>>
>>> On Sun, Feb 2, 2014 at 2:49 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>>> > Thanks, Matt and Stephen. I checked the CmakeOutput.log file under
>>> VTK-build
>>> > and didn't find any errors. Is that the best way to check build logs?
>>> >
>>> > I do have a recent Slicer build that includes VTK. Let me try to point
>>> > TubeTK to it and see what happens.
>>> >
>>> > Wei
>>> >
>>> >
>>> > On Sun, Feb 2, 2014 at 12:34 PM, Stephen Aylward
>>> > <stephen.aylward at kitware.com> wrote:
>>> >>
>>> >> Also, Ricardo is building it on opensuse.   It seems to be failing on
>>> the
>>> >> vtk build.  Perhaps try building vtk on its own via vtk.org or build
>>> slicer
>>> >> and point tubetk to it...see slicer.org
>>> >>
>>> >> S
>>> >>
>>> >> --
>>> >> Sent via phone.  Please excuse the brevity and typos.
>>> >>
>>> >> --
>>> >> Stephen R. Aylward, Ph.D.
>>> >> Senior Director of Operations
>>> >> Kitware, North Carolina
>>> >>
>>> >> On Feb 2, 2014 2:31 PM, "Matt McCormick" <matt.mccormick at kitware.com>
>>> >> wrote:
>>> >>>
>>> >>> Hi Wei,
>>> >>>
>>> >>> Builds reporting to the dashboard should be reproducible (there is
>>> >>> Debian Stable and Ubuntu 12.04 and 13.04 reporting):
>>> >>>
>>> >>>   http://open.cdash.org/index.php?project=TubeTK
>>> >>>
>>> >>> If further help is needed, we can give personalized attention with a
>>> >>> support contract:
>>> >>>
>>> >>>   http://www.kitware.com/products/support.html
>>> >>>
>>> >>> Thanks,
>>> >>> Matt
>>> >>>
>>> >>> On Sun, Feb 2, 2014 at 11:51 AM, Wei Liu <weiliu620 at gmail.com>
>>> wrote:
>>> >>> > Oops, I sent previous email before finishing it.
>>> >>> >
>>> >>> > Yes Matt, I meant TubeTK_USE_VTK.  So, I started a clean build,
>>> with
>>> >>> > all
>>> >>> > cmake options set to default (the UtbeT_USE_VTK = ON). Now I have
>>> >>> > different
>>> >>> > errors:
>>> >>> >
>>> >>> > ./CropImage: symbol lookup error:
>>> >>> >
>>> >>> >
>>> /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>> >>> > undefined symbol: _ZTI8vtkArray
>>> >>> >
>>> >>> > I don't remember the exact difference between this build and the
>>> >>> > previous
>>> >>> > one. The difference may be some Cmake options.
>>> >>> >
>>> >>> > Do you suggest me to use another OS, like ubuntu or Redhat-based
>>> OS?
>>> >>> >
>>> >>> > Wei
>>> >>> >
>>> >>> >
>>> >>> >
>>> >>> > On Fri, Jan 31, 2014 at 5:46 PM, Matt McCormick
>>> >>> > <matt.mccormick at kitware.com>
>>> >>> > wrote:
>>> >>> >>
>>> >>> >> Hmm, the only variable that should be adjusted should be called
>>> >>> >> TubeTK_USE_VTK.
>>> >>> >>
>>> >>> >> Starting a clean build with the defaults is good first step.
>>> >>> >>
>>> >>> >> Thanks,
>>> >>> >> Matt
>>> >>> >>
>>> >>> >> On Fri, Jan 31, 2014 at 7:35 PM, Wei Liu <weiliu620 at gmail.com>
>>> wrote:
>>> >>> >> > Matt,
>>> >>> >> >
>>> >>> >> > I didn't install VTK in the system, and I double checked the
>>> >>> >> > /usr/lib
>>> >>> >> > and
>>> >>> >> > lib64 directory.
>>> >>> >> >
>>> >>> >> > I built with the USE_VTK set to off. Is that a possible reason?
>>> I'm
>>> >>> >> > re-building TubeTK with it on now.
>>> >>> >> >
>>> >>> >> > Wei
>>> >>> >> >
>>> >>> >> >
>>> >>> >> >
>>> >>> >> >
>>> >>> >> > On Fri, Jan 31, 2014 at 4:08 PM, Matt McCormick
>>> >>> >> > <matt.mccormick at kitware.com>
>>> >>> >> > wrote:
>>> >>> >> >>
>>> >>> >> >> Hi Wei,
>>> >>> >> >>
>>> >>> >> >> This is not expected.  Is a system VTK installed?
>>> >>> >> >>
>>> >>> >> >> Thanks,
>>> >>> >> >> Matt
>>> >>> >> >>
>>> >>> >> >>
>>> >>> >> >>
>>> >>> >> >> On Fri, Jan 31, 2014 at 5:58 PM, Wei Liu <weiliu620 at gmail.com>
>>> >>> >> >> wrote:
>>> >>> >> >> > Dear TubeTK developers,
>>> >>> >> >> >
>>> >>> >> >> > I've successfully built TubeTK in release mode. But when I
>>> try to
>>> >>> >> >> > run
>>> >>> >> >> > one of
>>> >>> >> >> > the commands in TubeTK-build/bin/ I got the following error:
>>> >>> >> >> >
>>> >>> >> >> > ./CropImage: symbol lookup error:
>>> >>> >> >> >
>>> >>> >> >> >
>>> >>> >> >> >
>>> >>> >> >> >
>>> /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>> >>> >> >> > undefined symbol: _ZTI21vtkArrayDataAlgorithm
>>> >>> >> >> >
>>> >>> >> >> > I'm using gcc 4.7.1 under opensuse 12.2 64 bit. And I just
>>> let
>>> >>> >> >> > tubetk
>>> >>> >> >> > to
>>> >>> >> >> > build everything including ITK and VTK. Actually I got the
>>> same
>>> >>> >> >> > error
>>> >>> >> >> > when
>>> >>> >> >> > trying to run other commands.
>>> >>> >> >> >
>>> >>> >> >> > Is this error expected at this stage of development?
>>> >>> >> >> >
>>> >>> >> >> > Thanks,
>>> >>> >> >> > Wei
>>> >>> >> >> >
>>> >>> >> >> > _______________________________________________
>>> >>> >> >> > Tubetk-developers mailing list
>>> >>> >> >> > Tubetk-developers at tubetk.org
>>> >>> >> >> >
>>> >>> >> >> >
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>> >>> >> >> >
>>> >>> >> >
>>> >>> >> >
>>> >>> >
>>> >>> >
>>> >>> _______________________________________________
>>> >>> Tubetk-developers mailing list
>>> >>> Tubetk-developers at tubetk.org
>>> >>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>> >
>>> >
>>>
>>>
>>>
>>> --
>>>
>>> ====================================================
>>> Stephen R. Aylward, Ph.D.
>>> Senior Director of Operations, North Carolina, Kitware, Inc.
>>> http://www.kitware.com
>>> http://www.aylward.org
>>> (919) 969-6990 x300
>>> ====================================================
>>>
>>
>>
>> _______________________________________________
>> Tubetk-developers mailing list
>> Tubetk-developers at tubetk.org
>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>
>>
>
>
> --
> Christopher Mullins
> R&D Engineer
> Kitware Inc.,
> 919.869.8871
>
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