[Tubetk-developers] runtime error

[Stephen Aylward]

Only options to change are

1) TubeTK_BUILD_SLICER_EXTENSION = ON
2) TubeTK_USE_SLICER = ON

Then type [c] to configure.  This will produce an error message if
Slicer isn't automatically found...so

3) Slicer_DIR = <YourPathToSlicerBuild>/Slicer-build
-- Yes, point it to the Slicer-build subdir that is within the
top-level directory in which Slicer was built.

Do not change any other options.

You should do this in an empty build directory.  There are likely to
be problems if you try to switch a current build from being a
stand-alone build to being a Slicer-dependent build.

s


On Sun, Feb 2, 2014 at 2:49 PM, Wei Liu <weiliu620 at gmail.com> wrote:
> Thanks, Matt and Stephen. I checked the CmakeOutput.log file under VTK-build
> and didn't find any errors. Is that the best way to check build logs?
>
> I do have a recent Slicer build that includes VTK. Let me try to point
> TubeTK to it and see what happens.
>
> Wei
>
>
> On Sun, Feb 2, 2014 at 12:34 PM, Stephen Aylward
> <stephen.aylward at kitware.com> wrote:
>>
>> Also, Ricardo is building it on opensuse.   It seems to be failing on the
>> vtk build.  Perhaps try building vtk on its own via vtk.org or build slicer
>> and point tubetk to it...see slicer.org
>>
>> S
>>
>> --
>> Sent via phone.  Please excuse the brevity and typos.
>>
>> --
>> Stephen R. Aylward, Ph.D.
>> Senior Director of Operations
>> Kitware, North Carolina
>>
>> On Feb 2, 2014 2:31 PM, "Matt McCormick" <matt.mccormick at kitware.com>
>> wrote:
>>>
>>> Hi Wei,
>>>
>>> Builds reporting to the dashboard should be reproducible (there is
>>> Debian Stable and Ubuntu 12.04 and 13.04 reporting):
>>>
>>>   http://open.cdash.org/index.php?project=TubeTK
>>>
>>> If further help is needed, we can give personalized attention with a
>>> support contract:
>>>
>>>   http://www.kitware.com/products/support.html
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Sun, Feb 2, 2014 at 11:51 AM, Wei Liu <weiliu620 at gmail.com> wrote:
>>> > Oops, I sent previous email before finishing it.
>>> >
>>> > Yes Matt, I meant TubeTK_USE_VTK.  So, I started a clean build, with
>>> > all
>>> > cmake options set to default (the UtbeT_USE_VTK = ON). Now I have
>>> > different
>>> > errors:
>>> >
>>> > ./CropImage: symbol lookup error:
>>> >
>>> > /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>> > undefined symbol: _ZTI8vtkArray
>>> >
>>> > I don't remember the exact difference between this build and the
>>> > previous
>>> > one. The difference may be some Cmake options.
>>> >
>>> > Do you suggest me to use another OS, like ubuntu or Redhat-based OS?
>>> >
>>> > Wei
>>> >
>>> >
>>> >
>>> > On Fri, Jan 31, 2014 at 5:46 PM, Matt McCormick
>>> > <matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hmm, the only variable that should be adjusted should be called
>>> >> TubeTK_USE_VTK.
>>> >>
>>> >> Starting a clean build with the defaults is good first step.
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Fri, Jan 31, 2014 at 7:35 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>>> >> > Matt,
>>> >> >
>>> >> > I didn't install VTK in the system, and I double checked the
>>> >> > /usr/lib
>>> >> > and
>>> >> > lib64 directory.
>>> >> >
>>> >> > I built with the USE_VTK set to off. Is that a possible reason? I'm
>>> >> > re-building TubeTK with it on now.
>>> >> >
>>> >> > Wei
>>> >> >
>>> >> >
>>> >> >
>>> >> >
>>> >> > On Fri, Jan 31, 2014 at 4:08 PM, Matt McCormick
>>> >> > <matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> Hi Wei,
>>> >> >>
>>> >> >> This is not expected.  Is a system VTK installed?
>>> >> >>
>>> >> >> Thanks,
>>> >> >> Matt
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> On Fri, Jan 31, 2014 at 5:58 PM, Wei Liu <weiliu620 at gmail.com>
>>> >> >> wrote:
>>> >> >> > Dear TubeTK developers,
>>> >> >> >
>>> >> >> > I've successfully built TubeTK in release mode. But when I try to
>>> >> >> > run
>>> >> >> > one of
>>> >> >> > the commands in TubeTK-build/bin/ I got the following error:
>>> >> >> >
>>> >> >> > ./CropImage: symbol lookup error:
>>> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >> > /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>> >> >> > undefined symbol: _ZTI21vtkArrayDataAlgorithm
>>> >> >> >
>>> >> >> > I'm using gcc 4.7.1 under opensuse 12.2 64 bit. And I just let
>>> >> >> > tubetk
>>> >> >> > to
>>> >> >> > build everything including ITK and VTK. Actually I got the same
>>> >> >> > error
>>> >> >> > when
>>> >> >> > trying to run other commands.
>>> >> >> >
>>> >> >> > Is this error expected at this stage of development?
>>> >> >> >
>>> >> >> > Thanks,
>>> >> >> > Wei
>>> >> >> >
>>> >> >> > _______________________________________________
>>> >> >> > Tubetk-developers mailing list
>>> >> >> > Tubetk-developers at tubetk.org
>>> >> >> >
>>> >> >> > http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>> >> >> >
>>> >> >
>>> >> >
>>> >
>>> >
>>> _______________________________________________
>>> Tubetk-developers mailing list
>>> Tubetk-developers at tubetk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>
>



-- 

====================================================
Stephen R. Aylward, Ph.D.
Senior Director of Operations, North Carolina, Kitware, Inc.
http://www.kitware.com
http://www.aylward.org
(919) 969-6990 x300
====================================================