[Rtk-users] error on build rtk in visual studio 2012 when rtk use cuda
Simon Rit
simon.rit at creatis.insa-lyon.fr
Sun Jun 28 06:55:30 EDT 2015
Hi,
No, as far as I know (I'm not a Windows user), use of VS with RTK is
similar to any cmake-based project. So you could try to find some info on
the cmake website.
Simon
On Sun, Jun 28, 2015 at 11:23 AM, Robert Calließ <robert.calliess at gmx.de>
wrote:
> Hello,
> just a short question. Is there a tutorial for using RTK in visual studio
> respectively for creating the solution files?
>
> kind regards,
> Robert C.
>
>
> -------- Ursprüngliche Nachricht --------
> Von: Yang K Park <theday79 at gmail.com>
> Datum:27.06.2015 07:40 (GMT+01:00)
> An: 'safdary mohsen' <ieee.safdary at gmail.com>
> Cc: rtk-users at openrtk.org
> Betreff: Re: [Rtk-users] error on build rtk in visual studio 2012 when rtk
> use cuda
>
> Hi Safdary,
>
>
>
> I’ve checked my up-to-date rtk source.
>
>
>
> The FindCUDA_wrap.cmake file is located at “..\trunk\cmake” (Are you sure
> that you are using up-to-date rtk? If you are using old version located
> somewhere in “\tags\v1.0.0”, I’m recommending you to find another version
> in “trunk” directory.)
>
>
>
> In that cmake file, I found that the problematic codes had been already
> commented out as below:
>
>
>
> if("${CUDA_VERSION}" LESS 6.5)
>
> # set (CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> # -gencode arch=compute_10,code=sm_10
>
> # -gencode arch=compute_11,code=sm_11
>
> # -gencode arch=compute_12,code=sm_12
>
> # -gencode arch=compute_13,code=sm_13
>
> # )
>
> endif ()
>
>
>
> if("${CUDA_VERSION}" LESS 5.0)
>
> set(CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> -gencode arch=compute_20,code=sm_20
>
> -gencode arch=compute_20,code=compute_20
>
> )
>
> else()
>
> set(CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> -gencode arch=compute_20,code=sm_20
>
> -gencode arch=compute_30,code=sm_30
>
> -gencode arch=compute_35,code=sm_35
>
> -gencode arch=compute_35,code=compute_35
>
> )
>
> endif()
>
>
>
> But it seems that your capture image is different from my up-to-date one.
>
> If you are using some previous version of rtk ( such as 1.0.0, rc1.0_rc3),
> and really want to stick with it,
>
> just try to replace the suspicious paragraph with following:
>
>
>
> if(CUDA_VERSION_MAJOR LESS "6")
>
> message (STATUS " >> Generation 1: [X]")
>
> set (CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> -gencode arch=compute_10,code=sm_10
>
> -gencode arch=compute_11,code=sm_11
>
> -gencode arch=compute_12,code=sm_12
>
> -gencode arch=compute_13,code=sm_13
>
> )
>
> else()
>
> message (STATUS " >> Generation 1: [ ]")
>
> endif()
>
> if(CUDA_VERSION_MAJOR GREATER "2")
>
> message (STATUS " >> Generation 2: [X]")
>
> set (CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> -gencode arch=compute_20,code=sm_20
>
> )
>
> else()
>
> message (STATUS " >> Generation 2: [ ]")
>
> endif()
>
>
>
> if(CUDA_VERSION_MAJOR GREATER "4")
>
> message (STATUS " >> Generation 3: [X]")
>
> set (CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> -gencode arch=compute_30,code=sm_30
>
> )
>
> else()
>
> message (STATUS " >> Generation 3: [ ]")
>
> endif()
>
>
>
> if(CUDA_VERSION_MAJOR GREATER "5")
>
> message (STATUS " >> Generation 5: [X]")
>
> set (CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS}
>
> -gencode arch=compute_50,code=sm_50
>
> -gencode arch=compute_50,code=compute_50
>
> )
>
> else()
>
> message (STATUS " >> Generation 5: [ ]")
>
> endif()
>
>
>
>
>
> Again, I think you would not face CUDA issue with up-to-date version of
> rtk (which is in “trunk” directory).
>
>
>
> Hope this helps.
>
>
>
> Yang
>
>
>
>
>
> __________________________________________
>
> *From:* safdary mohsen [mailto:ieee.safdary at gmail.com]
> *Sent:* Saturday, June 27, 2015 12:48 AM
> *To:* Yang K Park
> *Subject:* Re: [Rtk-users] error on build rtk in visual studio 2012 when
> rtk use cuda
>
>
>
> Hi Yang
>
> So you are guess that remove --gencode arch=compute_10,code=sm_10 from
> cmake file(findcuda_wrap) couses this problem!!!
>
> have you any suggestion?
>
>
>
> [image: Inline image 2]
>
>
>
>
>
> On Fri, Jun 26, 2015 at 10:33 AM, safdary mohsen <ieee.safdary at gmail.com>
> wrote:
>
> Hi Yang
>
> i am use this command and the result is ok but in cuda mode not.
>
> rtkfdk --geometry geometry.xml --regexp .*.hnd --path Scan0 --output
> slice30.mha --verbose --spacing 0.25,0.25,0.25 --dimension 1024,1,1024
> --origin -127.875,30,-127.875 --hardware cpu)
>
>
>
> and screen shot of my cuda version is attached (v6.5)
>
>
>
>
>
>
>
> On Fri, Jun 26, 2015 at 10:22 AM, safdary mohsen <ieee.safdary at gmail.com>
> wrote:
>
> Hi Cyril Mory
>
> I am using example dataset for Varian from RTK website.
>
> But i am using 86 projections insted of 686:
>
> Proj_00000.hnd , Proj_00008.hnd , Proj_00012.hnd +(steps : 8) ...,
> Proj_00280.hnd, Proj_00288.hnd, ....,Proj_00672.hnd, Proj_00680.hnd
>
> and my geometry file is atached to mail
>
>
>
> On Thu, Jun 25, 2015 at 8:25 PM, Yang K Park <theday79 at gmail.com> wrote:
>
> Hi Safdary,
>
>
>
> I’m a bit confused because the attached source code is not original rtkfdk
> source code.
>
>
>
> So, my point about genuine rtkfdk means,
>
> 1. Update your rtk source
>
> 2. Don’t change any source code and just compile them.
>
> 3. Use the example dataset for Varian from RTK website.
>
> 4. In the command prompt, run the command line (“rtkfdk …”)
>
>
>
> I guess you already did the above things, and then you could see something
> with CPU option but nothing in your cuda-based reconstruction.
>
>
>
> If that is the case, I’m suspecting your CUDA/Graphic driver and cuda
> implementation such as CUDA-compute_10 error you might have faced during
> RTK compiling.
>
> To be honest, I have no idea how to deal with such issues.(Sorry about
> that)
>
>
>
> Yang
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> *From:* safdary mohsen [mailto:ieee.safdary at gmail.com]
> *Sent:* Thursday, June 25, 2015 1:28 AM
> *To:* Yang-Kyun Park
> *Cc:* rtk-users at openrtk.org; Cyril Mory
>
>
> *Subject:* Re: [Rtk-users] error on build rtk in visual studio 2012 when
> rtk use cuda
>
>
>
> Hi
>
>
>
> what is genuine rtkfdk.exe ?
>
>
>
> source code is attached to mail and command line is:
>
> rtkfdk --geometry geometry.xml --regexp .*.hnd --path Scan0 --output
> slice30.mha --verbose --spacing 0.25,0.25,0.25 --dimension 1024,1,1024
> --origin -127.875,30,-127.875 --hardware cuda
>
>
>
>
>
>
>
>
>
>
>
>
>
> On Wed, Jun 24, 2015 at 5:51 PM, Yang-Kyun Park <theday79 at gmail.com>
> wrote:
>
> Hi Safdary,
>
> So you might have tried the genuine rtkfdk.exe for your recon. Would you
> give me your command line you used?
>
> Yang
>
> On Jun 24, 2015 3:48 AM, "safdary mohsen" <ieee.safdary at gmail.com> wrote:
>
> Hi
>
>
>
> I cheched projectionreader and i abtained that all projection are readed.
>
> ( by using:
>
> typedef itk::ImageFileWriter<OutputImageType> WriterType;
>
> WriterType::Pointer writer = WriterType::New();
>
> writer->SetFileName( "reader.mha" );
>
> writer->SetInput( reader->GetOutput() );
>
> writer->Update();
>
> )
>
>
>
> and
>
>
>
> geometry is work for cpu mode means outputs are ok .
>
>
>
>
>
> I am confused for solving this problem!!!!!!!!!!!!!!!!!
>
>
>
> On Tue, Jun 16, 2015 at 11:09 AM, Cyril Mory <
> cyril.mory at creatis.insa-lyon.fr> wrote:
>
> Hi Safdary,
>
> Just to be sure: have you tried reconstructing in a larger volume
> (something really huge), just to make sure you are not trying to
> reconstruct some portion of space where, indeed, there is nothing ?
> You can try that easily, just replace your spacing, dimension and origin
> with
> --spacing 16,16,16 --dimension 256,256,256 --origin -2040,-2040,-2040
> in your rtkfdk command line.
>
> Cyril
>
>
>
> On 06/15/2015 05:19 PM, safdary mohsen wrote:
>
> Hi Yang
>
>
>
>
>
> I am use rtkfdk.exe but the results are same as my code,
>
> means all pixels are zero!!!
>
>
>
> regards
>
>
>
> safdari
>
>
>
> On Mon, Jun 15, 2015 at 7:10 PM, Yang K Park <theday79 at gmail.com> wrote:
>
> Hi Safdary,
>
>
>
> Again, please cc rtk-users at openrtk.org when you send your email, since
> other users (much better experts than me!) can give us any suggestions.
>
>
>
> Thanks.
>
>
>
> Yang
>
>
>
> *From:* Yang K Park [mailto:theday79 at gmail.com]
> *Sent:* Monday, June 15, 2015 10:37 AM
> *To:* 'safdary mohsen'
> *Cc:* rtk-users at openrtk.org
> *Subject:* RE: [Rtk-users] error on build rtk in visual studio 2012 when
> rtk use cuda
>
>
>
> Hi Safdary,
>
>
>
> I recommend you to try rtkfdk.exe first (with cuda option) to see if it
> works for you.
>
>
>
> The example of the command line would be:
>
>
>
> rtkfdk --geometry geom.xml --path proj_dir --regexp .*.his --output
> test_output.mha --verbos --spacing 1,1,1 --dimension 512,10,512 --origin
> -127.875,29.5,-127.875 --hardware cuda
>
>
>
> If it works for your image, then you can mimic the original rtkfdk code to
> make your own one.
>
>
>
> Good luck!
>
>
>
> Yang
>
>
>
>
>
>
>
>
>
> *From:* safdary mohsen [mailto:ieee.safdary at gmail.com
> <ieee.safdary at gmail.com>]
> *Sent:* Saturday, June 13, 2015 11:58 PM
> *To:* Yang K Park
> *Subject:* Re: [Rtk-users] error on build rtk in visual studio 2012 when
> rtk use cuda
>
>
>
> Hi Yang
>
>
>
> I have tried to adjust the window/level to see something inside of the
> image but all pixels set to zero.
>
> *My code is:*
>
> #define USE_CUDA
>
> int main(int , char **)
>
> {
>
> //// variable
>
> const unsigned int Dimension = 3;
>
> typedef float OutputPixelType;
>
> #ifdef USE_CUDA
>
> typedef itk::CudaImage< OutputPixelType, Dimension > OutputImageType;
>
> #else
>
> typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
>
> #endif
>
>
> ////////////////////////////////////////////////////////////////////////////////////////////////////
>
> // Generate file names of projections
>
> itk::RegularExpressionSeriesFileNames::Pointer names = itk::
> RegularExpressionSeriesFileNames::New();
>
> names->SetDirectory(std::string("d://RTK/build/bin/Release/Scan1/"));
>
> names->SetRegularExpression(std::string("Proj_.*.hnd"));
>
>
> ////////////////////////////////////////////////////////////////////////////////////////////////////
>
> //// geometry
>
> // Defines the RTK geometry object
>
> typedef rtk::ThreeDCircularProjectionGeometry GeometryType;
>
> GeometryType::Pointer geometry = GeometryType::New();
>
> // Projection matrices
>
> unsigned int numberOfProjections = 86;
>
> unsigned int firstAngle = 0;
>
> unsigned int angularArc = 360;
>
> unsigned int sid = 1000;
>
> unsigned int sdd = 1200;
>
> int isox = 0;
>
> int isoy = 0 ;
>
> for(unsigned int noProj=0; noProj<numberOfProjections; noProj++)
>
> {
>
> double angle = (float)firstAngle + (float)noProj * angularArc / (float
> )numberOfProjections;
>
> geometry->AddProjection(sid,
>
> sdd,
>
> angle,
>
> isox,
>
> isoy);
>
> }
>
>
> /////////////////////////////////////////////////////////////////////////////////////////////////////
>
>
> ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
>
> // Projections reader
>
> typedef rtk::ProjectionsReader< OutputImageType > ReaderType;
>
> ReaderType::Pointer reader = ReaderType::New();
>
> reader->SetFileNames(names->GetFileNames());
>
> ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
>
>
> // Create reconstructed image ////////////////////////////////////
>
> typedef rtk::ConstantImageSource< OutputImageType >
> ConstantImageSourceType;
>
> ConstantImageSourceType::Pointer ImageSource = ConstantImageSourceType
> ::New();
>
> ConstantImageSourceType::PointType origin;
>
> ConstantImageSourceType::SizeType sizeOutput;
>
> ConstantImageSourceType::SpacingType spacing;
>
> origin[0] = -127.75;
>
> origin[1] = -127.75;
>
> origin[2] = -127.75;
>
>
>
> sizeOutput[0] = 512;
>
> sizeOutput[1] = 512;
>
> sizeOutput[2] = 512;
>
> spacing[0] = .5;
>
> spacing[1] = .5;
>
> spacing[2] = .5;
>
> ImageSource->SetOrigin( origin );
>
> ImageSource->SetSpacing( spacing );
>
> ImageSource->SetSize( sizeOutput );
>
> ImageSource->SetConstant( 0. );
>
> // getchar(); //////////////////////////////////////
>
> /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
>
>
> std::cout << "Performing reconstruction" << std::endl;
>
> // FDK reconstruction filtering
>
> // FDK reconstruction filtering
>
> #ifdef USE_CUDA
>
> typedef rtk::CudaFDKConeBeamReconstructionFilter FDKType;
>
> #elif USE_OPENCL
>
> typedef rtk::OpenCLFDKConeBeamReconstructionFilter FDKType;
>
> #else
>
> typedef rtk::FDKConeBeamReconstructionFilter< OutputImageType > FDKType;
>
> #endif
>
> FDKType::Pointer feldkamp = FDKType::New();
>
> feldkamp->SetInput( 0, ImageSource->GetOutput() );
>
> feldkamp->SetInput( 1, reader->GetOutput());
>
> feldkamp->SetGeometry( geometry);
>
> TRY_AND_EXIT_ON_ITK_EXCEPTION( feldkamp->Update() );
>
> std::cout << "Writing output image" << std::endl;
>
> // Writer
>
> typedef itk::Image< float, 3 > ImageType;
>
> typedef itk::ImageFileWriter<ImageType> WriterType;
>
> WriterType::Pointer writer = WriterType::New();
>
> writer->SetFileName( "output11.mha" );
>
> writer->SetInput( feldkamp->GetOutput() );
>
> writer->Update();
>
>
>
> getchar();
>
> return 0;
>
> }
>
>
>
>
>
> _______________________________________________
>
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>
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>
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>
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>
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