[Rtk-users] installation problem rtk

[Simon Rit]

Great, a fix
<https://github.com/SimonRit/RTK/commit/001e44072ea96e7d6e3e70643e1e847cce011471>
has been pushed that limits Julien's patch to windows. Thanks again for the
report,
Simon

On Tue, Jun 23, 2015 at 9:48 PM, P. Jin <p.jin at amc.uva.nl> wrote:

>  Hi Simon,
>
>  Thanks for your fast response, it worked.
>
>  Best regards,
>
>  Peng
>
>  On 23 Jun 2015, at 13:23, Simon Rit <simon.rit at creatis.insa-lyon.fr>
> wrote:
>
>    Hi Jin,
>  Thanks for the report and sorry you're facing difficulties.
> Point-by-point:
>  - the gengetopt message has been removed, it was a trace of debugging,
>  - nvidia forbids use of gcc with cuda 7.0 which I believe is new. This is
> now accounted for with this fix
> <https://github.com/SimonRit/RTK/commit/1fc41da1e6bb7660bf7b86d430027045974e9009>
> ,
>  - the last problem is due to this fix
> <https://github.com/SimonRit/RTK/commit/1539f8b4ce3ba654dccd18e5db1beed00887084d>
> by Julien Jomier. Remove the lines he's added and that should compile (it
> does on my mac with cuda 7). Please confirm and I'll then check with Julien
> if / when this is required.
>  Simon
>
>
> On Mon, Jun 22, 2015 at 12:48 PM, P. Jin <p.jin at amc.uva.nl> wrote:
>
>>  Dear rtk-users/developers,
>>
>>
>>
>> In my installation I encountered some problems. I have installed itk
>> properly, gcc-4.9 and cuda-7.0 on mac os x 10.10. We create the
>> CUDA_BIN_PATH which is the directory of nvcc. The gcc-4.9 was installed in
>> /usr/local/bin, and the default gcc is in /usr/bin. In the cmake process,
>> the options I made look like this:
>>
>>
>>
>>  BUILD_APPLICATIONS                               ON
>>
>>
>>  BUILD_DOXYGEN                                       OFF
>>
>>
>>  BUILD_EXAMPLES                                      ON
>>
>>
>>  BUILD_SHARED_LIBS                                 ON
>>
>>
>>  BUILD_SIMPLERTK                                     OFF
>>
>>
>>  BUILD_TESTING                                          ON
>>
>>
>>  CMAKE_BUILD_TYPE
>>
>>
>>  CMAKE_INSTALL_PREFIX                          /usr/local/rtk
>>
>>
>>  CMAKE_OSX_ARCHITECTURES
>>
>>
>>  CMAKE_OSX_DEPLOYMENT_TARGET
>>
>>
>>  CMAKE_OSX_SYSROOT
>>
>>
>>  CUDA_HOST_COMPILER
>> /Applications/Xcode.app/Contents/Developer/To
>>
>>  CUDA_SDK_ROOT_DIR                CUDA_SDK_ROOT_DIR-NOTFOUND
>>
>>
>>  CUDA_TOOLKIT_ROOT_DIR            /Developer/NVIDIA/CUDA-7.0
>>
>>
>>  CUDA_USE_STATIC_CUDA_RUNTIME     ON
>>
>>
>>  DEFAULT_GCC                      /usr/local/bin/gcc
>>
>>
>>  EXACT_GCC                         EXACT_GCC-NOTFOUND
>>
>>
>>  EXACT_GCC2                       EXACT_GCC2-NOTFOUND
>>
>>
>>  GENGETOPT                        GENGETOPT-NOTFOUND
>>
>>
>>  ITK_DIR
>> /Users/pjin/Develop/InsightToolkit-4.7.2/ITKB
>>
>>  RTK_USE_CUDA                     ON
>>
>>
>>  RTK_USE_OPENCL                   OFF
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> when i specified DEFAULT_GCC is /usr/bin/gcc, the make process was stuck
>> at
>>
>>
>>
>> [ 23%] Building CXX object
>> code/CMakeFiles/rtkcuda.dir/rtkCudaCropImageFilter.cxx.o
>>
>> In file included from
>> /Users/pjin/Develop/RTK/code/rtkCudaCropImageFilter.cxx:20:
>>
>> In file included from
>> /Users/pjin/Develop/RTK/code/rtkCudaUtilities.hcu:24:
>>
>> In file included from
>> /Developer/NVIDIA/CUDA-7.0/include/math_functions.h:9822:
>>
>> /Developer/NVIDIA/CUDA-7.0/include/math_functions.hpp:3208:7: error: use
>> of
>>
>>       undeclared identifier '__signbitd'; did you mean 'signbit'?
>>
>>   if (__signbitd(a))
>>
>>       ^~~~~~~~~~
>>
>>       signbit
>>
>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:329:1:
>> note:
>>
>>       'signbit' declared here
>>
>> signbit(_A1 __x) _NOEXCEPT
>>
>> ^
>>
>> 1 error generated.
>>
>> make[2]: *** [code/CMakeFiles/rtkcuda.dir/rtkCudaCropImageFilter.cxx.o]
>> Error 1
>>
>> make[1]: *** [code/CMakeFiles/rtkcuda.dir/all] Error 2
>>
>> make: *** [all] Error 2
>>
>>
>>
>> when i specified DEFAULT_GCC to /usr/local/bin/gcc (where the gcc-4.9 was
>> installed), the make process was stuck at
>>
>>
>>
>> [ 20%] Building NVCC (Device) object
>> code/CMakeFiles/cuda_compile.dir/cuda_compile_generated_rtkCudaAverageOutOfROIImageFilter.cu.o
>>
>> nvcc fatal   : GNU C/C++ compiler is no longer supported as a host
>> compiler on Mac OS X.
>>
>> CMake Error at
>> cuda_compile_generated_rtkCudaAverageOutOfROIImageFilter.cu.o.cmake:207
>> (message):
>>
>>   Error generating
>>
>>
>> /Users/pjin/Develop/RTK/RTK-bin/code/CMakeFiles/cuda_compile.dir//./cuda_compile_generated_rtkCudaAverageOutOfROIImageFilter.cu.o
>>
>>
>>
>>
>>
>> make[2]: ***
>> [code/CMakeFiles/cuda_compile.dir/cuda_compile_generated_rtkCudaAverageOutOfROIImageFilter.cu.o]
>> Error 1
>>
>> make[1]: *** [code/CMakeFiles/rtkcuda.dir/all] Error 2
>>
>> make: *** [all] Error 2
>>
>>
>>
>> Does anyone have an idea about how to fix it?
>>
>>
>>
>> BTW, an warning message came up while I was configuring the cmake, which
>> is "gengetopt not found”.
>>
>>
>>
>> Thanks in advance!
>>
>>
>>
>> best regards,
>>
>> Peng
>>
>>
>>
>>
>>
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