[Paraview] v5.5.0 SuperBuild will Build but won't install

Kashiwa, Bucky bak at lanl.gov
Mon May 14 17:17:37 EDT 2018 

There is probably something silly on my part, but my varied attempts at a
superbuild in v5.5.0 typically build alright, but the install part fails
for reasons that are over my head.  A typical result is patched below (for
an offline build on v5.5.0-RC2); the cmake intial cache file is attached,
and its output is also attached.  Other details follow.  (The
paraview-superbuild directory has used: git fetch origin; git checkout
master; git submodule update.)

Is there something obvious that I have done wrong?  Thanks much, B. Kashiwa

+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+

The environment is this:
Currently Loaded Modules:
  1) friendly-testing   2) gcc/6.4.0   3) openmpi/2.1.2   4) cmake/3.10.2
 5) git/2.14.1

and the cmake command is:

setenv MPIROOT /usr/projects/hpcsoft/toss3/snow/openmpi/2.1.2-gcc-6.4.0 ; \
cmake \
-C cmake_GNU.txt \
-D CMAKE_INSTALL_PREFIX:PATH=/usr/projects/pv_dev/SB-5.5.0-SN \
-D LLVM_PREFIX:PATH=/usr/lib64/llvm \
-D MPI_CXX_COMPILER:FILEPATH=$MPIROOT/bin/mpicxx \
-D MPI_CXX_INCLUDE_PATH:PATH=$MPIROOT/include \
-D MPI_C_COMPILER:FILEPATH=$MPIROOT/bin/mpicc \
-D MPI_C_INCLUDE_PATH:PATH=$MPIROOT/include \
-D MPI_C_LIBRARIES:FILEPATH=$MPIROOT/lib/libmpi.so \
-D paraview_SOURCE_SELECTION="source" \
-D paraview_SOURCE_DIR:PATH=/usr/projects/pv_dev/ParaView-v5.5.0-RC2 \
 ../paraview-superbuild


the output from which is also attached.  Files at the download location
(from previous online builds) are:

[sn-fey2 SB-5.5.0-SN]$ ls /usr/projects/pv_dev/PV_superbuild_downloads/
boost_1_59_0.tar.bz2
genericio-master-a15ffc76cfa9f9674f933e8cb5ffc97a97fd7b27.zip
llvm-5.0.1.src.tar.xz         Python-2.7.11.tgz
bzip2-1.0.6.tar.gz      hdf5-1.8.13.tar.gz
            mesa-17.1.4.tar.xz            Python-2.7.14.tar.xz
embree-2.17.0.tar.gz    ispc-v1.9.1-linux.tar.gz
            mesa-18.0.0-rc4.tar.xz        silo-4.10.2-bsd-smalltest.tar.gz
expat-2.2.5.tar.bz2     ispc-v1.9.2-linux.tar.gz
            netcdf-4.3.2.modified.tar.gz  szip-2.1.tar.gz
ffmpeg-2.3.3.tar.bz2    libpng-1.6.23.tar.gz
            ospray-1.3.0.tar.gz           tbb2018_20171205oss_lin.tgz
freetype-2.4.8.tar.gz   libxml2-2.7.8.tar.gz
            ospray-1.4.0.tar.gz           tbb44_20150728oss_lin_0.tgz
freetype-2.8.1.tar.bz2  llvm-4.0.0.src.tar.xz
            OSPRayMaterials.tar.gz

===========================================================================
============

last of the make output:
. . .
[100%] Built target paraview
Install the project...
-- Install configuration: "Release"
CTEST_FULL_OUTPUT
-- Configuring done
-- Generating done
-- Build files have been written to:
/yellow/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/build/cpack/
paraview/TGZ/install
gmake[4]: warning: jobserver unavailable: using -j1.  Add `+' to parent
make rule.
Install the project...
-- Install configuration: "Release"
Copying 
/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/build/install/lib/l
ibvtkCommonMath-pv5.5.so.1 ==> lib
Creating symlink to lib/libvtkCommonMath-pv5.5.so.1 ==>
libvtkCommonMath-pv5.5.so
Copying 
/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/build/install/lib/l
ibvtkFiltersCore-pv5.5.so.1 ==> lib
Creating symlink to lib/libvtkFiltersCore-pv5.5.so.1 ==>
libvtkFiltersCore-pv5.5.so
Copying 
/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/build/install/lib/l
ibvtkFiltersGeneral-pv5.5.so.1 ==> lib
Creating symlink to lib/libvtkFiltersGeneral-pv5.5.so.1 ==>
libvtkFiltersGeneral-pv5.5.so
Copying 
/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/build/install/lib/l
ibvtkFiltersSources-pv5.5.so.1 ==> lib
Creating symlink to lib/libvtkFiltersSources-pv5.5.so.1 ==>
libvtkFiltersSources-pv5.5.so
Copying /usr/projects/pv_dev/Build-5.5.0-SN/install/lib/libgcc_s.so.1 ==>
lib
CMake Error at cmake_install.cmake:52 (message):
  Failed to install pvdataserver:

  /sbin/ldconfig: Path `/usr/lib64/ldapotp' given more than once

  /sbin/ldconfig: Path `/lib64' given more than once

  /sbin/ldconfig: Can't stat /libx32: No such file or directory

  /sbin/ldconfig: Path `/usr/lib' given more than once

  /sbin/ldconfig: Path `/usr/lib64' given more than once

  /sbin/ldconfig: Can't stat /usr/libx32: No such file or directory

  Traceback (most recent call last):

    File 
"/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/src/superbuild/cma
ke/scripts/fixup_bundle.unix.py", line 708, in <module>
      main(sys.argv[1:])
    File 
"/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/src/superbuild/cma
ke/scripts/fixup_bundle.unix.py", line 700, in main
      _install_binary(main_exe, is_excluded, bundle_dest, opts.libdir,
installed, manifest, opts.source, dry_run=opts.dry_run)
    File 
"/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/src/superbuild/cma
ke/scripts/fixup_bundle.unix.py", line 603, in _install_binary
      installed[dep.path] = (dep, copy_library(bundle_dest, dep_libdir,
dep, sources, dry_run=dry_run))
    File 
"/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/paraview/src/superbuild/cma
ke/scripts/fixup_bundle.unix.py", line 429, in copy_library
      shutil.copy(library.path, destination)
    File 
"/var/lib/perceus/vnfs/asc-fe/rootfs/usr/lib64/python2.7/shutil.py", line
119, in copy
      copyfile(src, dst)
    File 
"/var/lib/perceus/vnfs/asc-fe/rootfs/usr/lib64/python2.7/shutil.py", line
69, in copyfile
      raise Error("`%s` and `%s` are the same file" % (src, dst))

  shutil.Error:
  `/usr/projects/pv_dev/Build-5.5.0-SN/install/lib/libgcc_s.so.1` and
  `/usr/projects/pv_dev/Build-5.5.0-SN/install/lib/libgcc_s.so.1` are the
  same file



gmake[4]: *** [install] Error 1
CMake Error at superbuild/cmake_install.cmake:61 (message):
  Failed to install the paraview/TGZ package.
Call Stack (most recent call first):
  cmake_install.cmake:42 (include)


gmake[3]: *** [install] Error 1
CMake Error at 
/usr/projects/pv_dev/Build-5.5.0-SN/superbuild/sb-paraview-install.cmake:47
 (message):
  Failed with exit code 2


make[2]: *** [superbuild/paraview/stamp/paraview-install] Error 1
make[1]: *** [superbuild/CMakeFiles/paraview.dir/all] Error 2
make: *** [all] Error 2



=======================================================================73
<>Bucky Kashiwa PhD, PE  <> Post: MS B216, Los Alamos, NM  87545       <>
<>  Ofc: TA3-SM123-RM276 <>Email: bak at lanl.gov, kashiwa at qwest.net      <>
<>Voice: 505-667-8812    <>  Fax: 505-665-5926  <>
                         <> Home: 505-988-7332  <> Cell: 505-795-5581  <>
=======================================================================73


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