[Paraview] how to build the paraview superbuild with mesa on a cluster (where user is not a root user)

Ezhilmathi Krishnasamy ezhkr601 at student.liu.se
Fri Jun 30 12:54:57 EDT 2017 

Hi Thanks!

When I try to install Paraview,  I am getting the following error.
Could some one please tell me how to fix this issue.
I am trying to install the Paraview on a super computer to use it
for remote rendering without using the GUI,  like with mesa support.

kriezh at beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD> git clone
--recursive https://gitlab.kitware.com/paraview/paraview-superbuild.git
Cloning into 'paraview-superbuild'...
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
remote: Counting objects: 6723, done.
remote: Compressing objects: 100% (2459/2459), done.
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
remote: Total 6723 (delta 4451), reused 6342 (delta 4201)
Receiving objects: 100% (6723/6723), 2.05 MiB | 741 KiB/s, done.
Resolving deltas: 100% (4451/4451), done.
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
Checking out files: 100% (196/196), done.
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
Submodule 'superbuild' (
https://gitlab.kitware.com/paraview/common-superbuild.git) registered for
path 'superbuild'
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
Cloning into 'superbuild'...
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
remote: Counting objects: 6752, done.
remote: Compressing objects: 100% (2235/2235), done.
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
remote: Total 6752 (delta 4505), reused 6574 (delta 4395)
Receiving objects: 100% (6752/6752), 1.59 MiB | 592 KiB/s, done.
Resolving deltas: 100% (4505/4505), done.
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
Submodule path 'superbuild': checked out
'8f357bb5bf35419c210b3f9e0adbc9df08f565f2'
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied
warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
Permission denied


kriezh at beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
cmake .
-- The C compiler identification is Intel 14.0.4.20140805
-- The CXX compiler identification is Intel 14.0.4.20140805
-- Cray Programming Environment 2.2.1 C
-- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc
-- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Cray Programming Environment 2.2.1 CXX
-- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC
-- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning at superbuild/cmake/SuperbuildUtils.cmake:242 (message):
  Failed to determine if the common superbuild is an old checkout.  The
  common superbuild may be out of date, but cannot be verified.: warning:
  unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig': Permission
  denied

  warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
  Permission denied

  warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
  Permission denied

  warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
  Permission denied

  error: unknown option `is-ancestor'

  usage: git merge-base [-a|--all] <commit> <commit>...

     or: git merge-base [-a|--all] --octopus <commit>...
     or: git merge-base --independent <commit>...



      -a, --all             output all common ancestors
      --octopus             find ancestors for a single n-way merge
      --independent         list revs not reachable from others
Call Stack (most recent call first):
  superbuild/CMakeLists.txt:28 (_superbuild_check_up_to_date)


-- Check size of void*
-- Check size of void* - done
-- Found Git: /usr/bin/git (found version "1.7.12.4")
-- Determined source version for paraview: 5.4.0
CMake Error at superbuild/cmake/SuperbuildMacros.cmake:289 (message):
  The build tree appears to be inside of the git repository located at
  /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild.
  This interferes with the way the superbuild applies patches to projects
and
  is not supported.  Please relocate the build tree to a directory which is
  not under a git repository.
Call Stack (most recent call first):
  superbuild/projects/bzip2.cmake:7 (superbuild_apply_patch)
  superbuild/cmake/SuperbuildMacros.cmake:477 (include)
  superbuild/CMakeLists.txt:113 (_superbuild_discover_projects)


-- Configuring incomplete, errors occurred!
See also
"/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild/CMakeFiles/CMakeOutput.log".


Kind regards,
Mathi





On 30 June 2017 at 04:13, Cory Quammen <cory.quammen at kitware.com> wrote:

> On Wed, Jun 28, 2017 at 1:14 PM, Ezhilmathi Krishnasamy
> <ezhkr601 at student.liu.se> wrote:
> > Hi,
> >
> > Can anyone please give me some instructions how to Paraview Superbuid
> > to install and use them with out using the GUI (using the python script
> to
> > render the images on the cluster or super computer).
> >
> > I see there are some instructions in here:
> > https://gitlab.kitware.com/paraview/paraview-superbuild/
> >
> > But I could not find any build instructions.
>
> Take a look again, that page includes the README.md file contents
> which includes build instructions.
>
> To build without the GUI, you should just need to set the options
> ENABLE_qt4 and ENABLE_qt5 to OFF. To build with Python, set
> ENABLE_python to ON.
>
> Best regards,
> Cory
>
> >
> > Kind regards,
> > Mathi
> >
> > _______________________________________________
> > Powered by www.kitware.com
> >
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> >
>
>
>
> --
> Cory Quammen
> Staff R&D Engineer
> Kitware, Inc.
>
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