[Paraview] Segmentation fault in protobuf

[u.utku.turuncoglu at be.itu.edu.tr]

Hi Andy,

Thanks for your help and the script. Actually, I was adding input names to
the script by hand. Anyway, I tested your script and it gives similar
error as follows,

  File
"/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl/lib/site-packages/paraview/coprocessing.py",
line 305, in CreateProducer
    if grid.IsA("vtkImageData") == True or \
AttributeError: 'NoneType' object has no attribute 'IsA'
    grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
  File
"/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl/lib/site-packages/paraview/coprocessing.py",
line 305, in CreateProducer
    if grid.IsA("vtkImageData") == True or \
AttributeError: 'NoneType' object has no attribute 'IsA'
    grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
  File
"/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl/lib/site-packages/paraview/coprocessing.py",
line 305, in CreateProducer
    if grid.IsA("vtkImageData") == True or \
AttributeError: 'NoneType' object has no attribute 'IsA'

I'll tested whole environment once again with Intel compiler to see it
helps or not. Let me know if you have any other idea.

Regards,

--ufuk


> Hi Ufuk,
>
> For the allinputsgridwriter.py you currently need to manually add in the
> inputs yourself (i.e. replace the "namedinputs = ['input']" line with the
> name of your inputs. That has caught me in the past as well so I decided
> to
> fix that. Attached is my new version of that script where it doesn't
> require you to specify the input names in case you want to try this new
> one
> instead. If you do, please let us know if that solves your problem or not.
>
> Best,
> Andy
>
>
> On Tue, Aug 15, 2017 at 12:40 PM, Ben Boeckel <ben.boeckel at kitware.com>
> wrote:
>
>> On Tue, Aug 15, 2017 at 17:59:47 +0300, u.utku.turuncoglu at be.itu.edu.tr
>> wrote:
>> > I solved the problem and i am able to run the simulation code with
>> > Catalyst support by installing PV (5.4.0 rc4 and 5.3.0) with newer
>> version
>> > of protobuf library (3.3.0) and compiling the model code with this
>> version
>> > of PV (using gcc).
>> >
>> > Now, the problem is that the code gives following warnings and do
>> nothing
>> > with standard allinputsgridwriter.py script. Do you think that it is
>> > related with protobuf library. The same setup is working without any
>> > problem in an other system using Intel compiler.
>>
>> It'd be better to try with one MPI process rather than…I count 10 to
>> get
>> the error? Not sure what's up though, Andy?
>>
>> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl
>> /lib/site-packages/paraview/coprocessing.py",
>> > line 305, in CreateProducer
>> >     grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
>> >     grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
>> >     if grid.IsA("vtkImageData") == True or \
>> >   File
>> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl
>> /lib/site-packages/paraview/coprocessing.py",
>> > line 305, in CreateProducer
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> >   File
>> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl
>> /lib/site-packages/paraview/coprocessing.py",
>> > line 305, in CreateProducer
>> >     if grid.IsA("vtkImageData") == True or \
>> >     if grid.IsA("vtkImageData") == True or \
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> >     grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
>> >   File
>> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl
>> /lib/site-packages/paraview/coprocessing.py",
>> > line 305, in CreateProducer
>> >     grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
>> >     if grid.IsA("vtkImageData") == True or \
>> >     if grid.IsA("vtkImageData") == True or \
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> >     if grid.IsA("vtkImageData") == True or \
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> >   File
>> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl
>> /lib/site-packages/paraview/coprocessing.py",
>> > line 305, in CreateProducer
>> >     if grid.IsA("vtkImageData") == True or \
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> > [PERFLOG] :: COPROC          2     0.01404021SEC.
>> >  Running COP Component: 2005-08-27T00:12:00 --> 2005-08-27T00:18:00
>> Time
>> > Step:     2 [         720.00]
>> > ATM-TO-COP: redist mask [CROSS] to mask [CROSS]
>> > ATM-TO-COP: redist topo [CROSS] to topo [CROSS]
>> > AttributeError: 'NoneType' object has no attribute 'IsA'
>> >     grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0)
>> >   File
>> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl
>> /lib/site-packages/paraview/coprocessing.py",
>> > line 305, in CreateProducer
>> >     if grid.IsA("vtkImageData") == True or \
>>
>> --Ben
>>
>