[Paraview] ParaView5.1.0 fails to read XDMF 3DCoRectMesh
Sonja Habbinga
s.habbinga at fz-juelich.de
Tue Jul 12 09:07:25 EDT 2016
Hello,
since Version 5, I have several problems using the xdmf reader.
Unlike ParaView4.4.0, which is able to read it withou any problems,
ParaView 5.1.0 and 5.0.1 fail to read the following xdmf file:
(Please find the complete xdmf file here:
https://fz-juelich.sciebo.de/index.php/s/f6VicXjvJz64q3l
and the binary file here:
https://fz-juelich.sciebo.de/index.php/s/XKcfR9kDKW9Nmct )
Can anyone reproduce the error? Has the xdmf reader changed sice 4.4.0?
thanks for your help,
Sonja
#############################################################################################
<?xml version="1.0" ?>
<!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []>
<Xdmf xmlns:xi="http://www.w3.org/2001/XInclude" Version="2.0">
<Domain>
<Grid Name="timeslice 784" GridType="Uniform">
<Topology name="T00000" TopologyType="3DCoRectMesh"
Dimensions=" 1000 400 1">
</Topology>
<Geometry name="G00000" Type="ORIGIN_DXDYDZ">
<!-- Origin [um] -->
<DataItem Format="XML" Dimensions="3">
0.00000000E+00 0.00000000E+00 0.19949875E+02
</DataItem>
<!-- DzDyDx [um] -->
<DataItem Format="XML" Dimensions="3">
0.50050050E-01 0.10025063E+00 0.10025063E+00
</DataItem>
</Geometry>
<!-- Time of timeslice [fs] -->
<Time TimeType="Single" Value=" 0.93397947E+02"/>
<!-- Particle densities per particle species [units] -->
<Attribute Name="Charge density - electrons" Center="Node">
<DataItem Format="Binary" Seek=" 0" DataType="Float"
Precision="4" Endian="Little"
Dimensions=" 1000 400 1">
pfield00784
</DataItem>
</Attribute>
<Attribute Name="Charge density - protons" Center="Node">
<DataItem Format="Binary" Seek=" 1600000" DataType="Float"
Precision="4" Endian="Little"
Dimensions=" 1000 400 1">
pfield00784
</DataItem>
</Attribute>
...
#############################################################################################
the error message looks like this:
Alloc :: Resource temporarily unavailable
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx,
line 1208
vtkXdmfReader (0x3c794c0): Failed to read attribute data
Alloc :: Resource temporarily unavailable
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx,
line 1208
vtkXdmfReader (0x3c794c0): Failed to read attribute data
Alloc :: Resource temporarily unavailable
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx,
line 1208
vtkXdmfReader (0x3c794c0): Failed to read attribute data
....
Alloc :: No such file or directory
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 551 (Memory Object Array has no data storage)
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 905 (Can't Read Temp Dataset)
Alloc :: No such file or directory
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 551 (Memory Object Array has no data storage)
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 905 (Can't Read Temp Dataset)
Alloc :: No such file or directory
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 551 (Memory Object Array has no data storage)
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 905 (Can't Read Temp Dataset)
Alloc :: Success
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 551 (Memory Object Array has no data storage)
XDMF Error in
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx
line 905 (Can't Read Temp Dataset)
Alloc :: Success
...
Generic Warning: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Rendering/Volume/vtkVolumeTextureMapper3D.cxx,
line 682
vtkVolumeTextureMapper3D::vtkVolumeTextureMapper3D was deprecated for
VTK 7.0 and will be removed in a future version.
Generic Warning: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Rendering/VolumeOpenGL/vtkOpenGLVolumeTextureMapper3D.cxx,
line 57
vtkOpenGLVolumeTextureMapper3D::vtkOpenGLVolumeTextureMapper3D was
deprecated for VTK 7.0 and will be removed in a future version.
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,
line 153
vtkFloatArray (0x5490c60): Source array too small, requested tuple at
index 0, but there are only 0 tuples in the array.
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,
line 153
vtkFloatArray (0x5490e60): Source array too small, requested tuple at
index 0, but there are only 0 tuples in the array.
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,
line 153
vtkFloatArray (0x5491200): Source array too small, requested tuple at
index 0, but there are only 0 tuples in the array.
ERROR: In
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,
line 153
vtkFloatArray (0x54915a0): Source array too small, requested tuple at
index 0, but there are only 0 tuples in the array.
...
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