[Paraview] can't cmake pv5

Gena Bug archaerolog at mail.ru
Mon Feb 22 15:52:24 EST 2016 

Hi, Chuck!

Thank you for the response, unfortunately it doesn't help:
1. during the cmake step now I see a lot of messages:
{{{
-- Could NOT find MPI_C (missing: MPI_C_LIBRARIES)
-- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES)
-- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIBRARIES)
}}}
2. however, I see "Configuring done" message at the end and
3. then a lot of dev-messages like this one:
{{{
This warning is for project developers. Use -Wno-dev to suppress it.

CMake Warning (dev) in Plugins/SciberQuestToolKit/CMakeLists.txt:
Policy CMP0021 is not set: Fatal error on relative paths in
INCLUDE_DIRECTORIES target property. Run "cmake --help-policy CMP0021" for
policy details. Use the cmake_policy command to set the policy and
suppress this warning.

Found relative path while evaluating include directories of
"vtkSciberQuestCS":

"option"
}}}
4. OK, configuring done, so I type "make" and see this:
{{{
CMake Error: Parse error in cache file 
/home/gennadiy/bin/pv.build/CMakeCache.txt. Offending entry: 
/usr/lib/../lib64/crt1.o:;In;function;`_start':
CMake Error: Parse error in cache file 
/home/gennadiy/bin/pv.build/CMakeCache.txt. Offending entry: 
/usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109:;undefined;reference;to;`main'
CMake Error: Parse error in cache file 
/home/gennadiy/bin/pv.build/CMakeCache.txt. Offending entry: 
/usr/lib/../lib64/crt1.o:;In;function;`_start':
CMake Error: Parse error in cache file 
/home/gennadiy/bin/pv.build/CMakeCache.txt. Offending entry: 
/usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109:;undefined;reference;to;`main'
CMake Error: Parse error in cache file 
/home/gennadiy/bin/pv.build/CMakeCache.txt. Offending entry: 
/common/intel/composer_xe_2015.0.090/compiler/lib/intel64/for_main.o:;In;function;`main':
CMake Error: Parse error in cache file 
/home/gennadiy/bin/pv.build/CMakeCache.txt. Offending entry: 
/export/users/nbtester/efi2linux_nightly/branch-15_0/20140724_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x2a):;undefined;reference;to;`MAIN__'
}}}
5. and then cmake (not make!) continues from HDF5 tests and
6. finally
{{{
-- Configuring incomplete, errors occurred!
See also "/home/gennadiy/bin/pv.build/CMakeFiles/CMakeOutput.log".
See also "/home/gennadiy/bin/pv.build/CMakeFiles/CMakeError.log".
}}}



On 19.02.2016 19:42, Chuck Atkins wrote:
> Hi Gena,
>
> Sometime oddities like this show up when different compiler wrappers are
> being used.  In this case, your using the Intel MPI wrappers for all
> compilations.  Try bypassing them for the main compilation and only using
> them for MPI detection:
>
> CC=icc CXX=icpc FC=ifort \
> cmake \
>    -DMPI_C_COMPILER=mpiicc \
>    -DMPI_CXX_COMPILER=mpiicpc \
>    -DMPI_Fortran_COMPILER=mpiifort \
>    <rest_of_cmake options>
>
> - Chuck
>
> On Fri, Feb 19, 2016 at 5:13 AM, Gena Bug <archaerolog at mail.ru> wrote:
>
>> Hi!
>>
>> I was trying to build pv5 with mpi and osmesa and couldn't pass cmake
>> step. I use this command:
>>
>> ~/bin/cmake/bin/cmake -G "Unix Makefiles" \
>> -DBUILD_TESTING=OFF \
>> -DPARAVIEW_USE_MPI=ON \
>> -DPYTHON_LIBRARY="/home/gennadiy/bin/python/lib/libpython2.7.a" \
>> -DPYTHON_INCLUDE_DIR="/home/gennadiy/bin/python/include/python2.7" \
>> -DPYTHON_EXECUTABLE="/home/gennadiy/bin/python/bin/python" \
>> -DPARAVIEW_ENABLE_PYTHON=ON \
>> -DPARAVIEW_BUILD_QT_GUI=OFF \
>> -DVTK_USE_X=OFF \
>> -DOPENGL_INCLUDE_DIR="/home/gennadiy/bin/mesa/include" \
>> -DOPENGL_gl_LIBRARY="/home/gennadiy/bin/mesa/lib/libOSMesa.so" \
>> -DOPENGL_glu_LIBRARY="" \
>> -DVTK_OPENGL_HAS_OSMESA=ON \
>> -DOSMESA_INCLUDE_DIR="/home/gennadiy/bin/mesa/include" \
>> -DOSMESA_LIBRARY="/home/gennadiy/bin/mesa/lib/libOSMesa.so" \
>> -DCMAKE_INSTALL_PREFIX="/home/gennadiy/bin/paraview" \
>> -DCMAKE_CXX_COMPILER="mpiicpc" \
>> -DCMAKE_C_COMPILER="mpiicc" \
>> -DCMAKE_Fortran_COMPILER="mpiifort" \
>> -DCMAKE_BUILD_TYPE=RELEASE \
>> -DCMAKE_CXX_FLAGS_RELEASE=" -O2 -DNDEBUG " \
>> -DCMAKE_C_FLAGS_RELEASE=" -O2 -DNDEBUG " \
>> <path>
>>
>> (cmake 3.4.1, 3.4.3 and 3.5rc3 downloaded from the site, custom python
>> 2.7.11 and mesa 11.1.2 were used.)
>>
>> and at the end of its output I see this:
>> {{{
>> ...
>> -- Configuring incomplete, errors occurred!
>> See also "/home/gennadiy/bin/pv.build/CMakeFiles/CMakeOutput.log".
>> See also "/home/gennadiy/bin/pv.build/CMakeFiles/CMakeError.log".
>> }}}
>>
>> Both log-files contain a lot of information however I can't figure out the
>> real problem -- both contain the output from failed tests and nothing about
>> why configuration failed.
>>
>> Stdout also looks normal except messages about sizeof types:
>> {{{
>> ...
>> -- HDF5: Performing Other Test HAVE_STAT64_STRUCT - Success
>> -- Looking for fstat64
>> -- Looking for fstat64 - found
>> -- Looking for stat64
>> -- Looking for stat64 - found
>> -- Check size of char
>> CMake Error at
>> /home/gennadiy/bin/cmake/share/cmake-3.4/Modules/CheckTypeSize.cmake:124
>> (try_compile):
>>    Cannot copy output executable
>>
>>      ''
>>
>>    to destination specified by COPY_FILE:
>>
>>
>> '/home/gennadiy/bin/pv.build/CMakeFiles/CheckTypeSize/H5_SIZEOF_CHAR.bin'
>>
>>    Unable to find the executable at any of:
>>
>>      /home/gennadiy/bin/pv.build/CMakeFiles/CMakeTmp/cmTC_bf5e7
>>      /home/gennadiy/bin/pv.build/CMakeFiles/CMakeTmp/Debug/cmTC_bf5e7
>>      /home/gennadiy/bin/pv.build/CMakeFiles/CMakeTmp/Development/cmTC_bf5e7
>>
>> Call Stack (most recent call first):
>>
>> /home/gennadiy/bin/cmake/share/cmake-3.4/Modules/CheckTypeSize.cmake:249
>> (__check_type_size_impl)
>>    VTK/ThirdParty/hdf5/vtkhdf5/config/cmake/ConfigureChecks.cmake:512
>> (CHECK_TYPE_SIZE)
>>    VTK/ThirdParty/hdf5/vtkhdf5/config/cmake/ConfigureChecks.cmake:519
>> (H5_CHECK_TYPE_SIZE)
>>    VTK/ThirdParty/hdf5/vtkhdf5/CMakeLists.txt:276 (include)
>> ...
>> }}}
>>
>> Can anyone point me to a real problem?
>>
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