[Paraview] segfault playing a simulation
Sergi Mateo Bellido
sergi.mateo.bellido at gmail.com
Sat Jul 11 05:32:30 EDT 2015
Hi Cory,
Thanks for your time. I have been playing a bit with the files too and I
realized that replacing the whole_extent of each *.vti by the whole
dataset everything works.
I would like to generate something like this:
http://vtk.1045678.n5.nabble.com/Example-vti-file-td3381382.html . In
this example, each imagedata has whole_extent=whole size but its pieces
only contain a portion of the whole dataset. Does this configuration
make sense?
I have been trying to generate something like that but I failed. My code
looks like this one:
http://www.vtk.org/Wiki/VTK/Examples/Cxx/IO/WriteVTI but using
VtkFloatArray as buffers and attaching them to the VtkImageData. I tried
defining the set of the VtkImageData as the whole dataset and defining
the VtkFloatArrays of the size of each portion but it didn't work :(
Any clue?
Thanks!
Sergi
On 07/09/2015 05:00 PM, Cory Quamen wrote:
> Hi Sergi,
>
> I played with your data set a little but haven't found what is wrong.
> I am suspicious of two things in the data file, the extent and the
> offset in the second data array (it looks too small).
>
> What are the dimensions of your grid? Note that the whole extent upper
> values need to be the dimension - 1, e.g., for a 300x300x300 grid, the
> whole extent should be 0 299 0 299 0 299.
>
> Thanks,
> Cory
>
> On Wed, Jul 1, 2015 at 12:27 PM, Sergi Mateo Bellido
> <sergi.mateo.bellido at gmail.com <mailto:sergi.mateo.bellido at gmail.com>>
> wrote:
>
> Hi Cory,
>
> Thanks for your time. These data files have been produced by a
> software that I'm developing with some colleagues.
>
> Best regards,
>
> Sergi
>
>
> On 07/01/2015 03:59 PM, Cory Quammen wrote:
>> Sergi,
>>
>> I can confirm the crash you are seeing in the same location in
>> the code. I'm looking for the cause.
>>
>> What software produced these data files?
>>
>> Thanks,
>> Cory
>>
>> On Wed, Jul 1, 2015 at 1:59 AM, Sergi Mateo Bellido
>> <sergi.mateo.bellido at gmail.com
>> <mailto:sergi.mateo.bellido at gmail.com>> wrote:
>>
>> Hi Cory,
>>
>> Thanks for your answer. I reproduced the segfault in two
>> different ways, but it's always after loading a data set:
>> - After loading a data set, I tried to play the simulation
>> ->segfault
>> - After loading a data set, I tried to filter some fields
>> from the model (Pointer array status). As soon as I clicked
>> the 'apply' button, paraview crashed with a segfault.
>>
>> Thanks,
>> Sergi
>>
>>
>>
>> On 06/30/2015 06:21 AM, Cory Quammen wrote:
>>> Hi Sergi,
>>>
>>> Could you clarify when you are seeing this crash? Is it
>>> right when starting ParaView or when first loading a data set?
>>>
>>> Thanks,
>>> Cory
>>>
>>> On Tue, Jun 23, 2015 at 8:55 AM, Sergi Mateo Bellido
>>> <sergi.mateo.bellido at gmail.com
>>> <mailto:sergi.mateo.bellido at gmail.com>> wrote:
>>>
>>> Hi,
>>>
>>> I'm trying to reproduce a simulation with ParaView 4.3.1
>>> and it always crashes when I start it. You can find the
>>> backtrace below:
>>>
>>> =========================================================
>>> Process id 6681 Caught SIGSEGV at 0x925b124 address not
>>> mapped to object
>>> Program Stack:
>>> WARNING: The stack trace will not use advanced
>>> capabilities because this is a release build.
>>> 0x7f54ce081d40 : ??? [(???) ???:-1]
>>> 0x7f54ce19caf6 : ??? [(???) ???:-1]
>>> 0x7f54cb123736 :
>>> vtkXMLPStructuredDataReader::CopySubExtent(int*, int*,
>>> long long*, int*, int*, long long*, int*, int*,
>>> vtkDataArray*, vtkDataArray*) [(libvtkIOXML-pv4.3.so.1)
>>> ???:-1]
>>> 0x7f54cb12389f :
>>> vtkXMLPStructuredDataReader::CopyArrayForPoints(vtkDataArray*,
>>> vtkDataArray*) [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb11cc1f : vtkXMLPDataReader::ReadPieceData()
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb11ca14 : vtkXMLPDataReader::ReadPieceData(int)
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb124d7a :
>>> vtkXMLPStructuredDataReader::ReadXMLData()
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb1280eb :
>>> vtkXMLReader::RequestData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb1273b6 :
>>> vtkXMLReader::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cd6200f9 :
>>> vtkFileSeriesReader::RequestData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkPVVTKExtensionsDefault-pv4.3.so.1) ???:-1]
>>> 0x7f54cd61f07f :
>>> vtkFileSeriesReader::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkPVVTKExtensionsDefault-pv4.3.so.1) ???:-1]
>>> 0x7f54d2706204 :
>>> vtkExecutive::CallAlgorithm(vtkInformation*, int,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d27016cc :
>>> vtkDemandDrivenPipeline::ExecuteData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2700201 :
>>> vtkCompositeDataPipeline::ExecuteData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2704067 :
>>> vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271d959 :
>>> vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d26fe387 :
>>> vtkCompositeDataPipeline::ForwardUpstream(vtkInformation*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2704010 :
>>> vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271d959 :
>>> vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d26fe387 :
>>> vtkCompositeDataPipeline::ForwardUpstream(vtkInformation*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2704010 :
>>> vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271d959 :
>>> vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d27035ae :
>>> vtkDemandDrivenPipeline::UpdateData(int)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271e87f :
>>> vtkStreamingDemandDrivenPipeline::Update(int)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54cd98fa7f :
>>> vtkPVDataRepresentation::ProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformation*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd973d79 :
>>> vtkGeometryRepresentation::ProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformation*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd975d71 :
>>> vtkGeometryRepresentationWithFaces::ProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformation*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd9bd388 :
>>> vtkPVView::CallProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformationVector*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd9bd552 : vtkPVView::Update()
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd9acb78 : vtkPVRenderView::Update()
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54d780ac30 :
>>> vtkPVRenderViewCommand(vtkClientServerInterpreter*,
>>> vtkObjectBase*, char const*, vtkClientServerStream
>>> const&, vtkClientServerStream&, void*)
>>> [(libvtkPVServerManagerApplication-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e135e0 :
>>> vtkClientServerInterpreter::CallCommandFunction(char
>>> const*, vtkObjectBase*, char const*,
>>> vtkClientServerStream const&, vtkClientServerStream&)
>>> [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e18393 :
>>> vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream
>>> const&, int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16832 :
>>> vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream
>>> const&, int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16ced :
>>> vtkClientServerInterpreter::ProcessStream(vtkClientServerStream
>>> const&) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b26cec :
>>> vtkPVSessionCore::ExecuteStreamInternal(vtkClientServerStream
>>> const&, bool)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b26958 :
>>> vtkPVSessionCore::ExecuteStream(unsigned int,
>>> vtkClientServerStream const&, bool)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b25203 :
>>> vtkPVSessionBase::ExecuteStream(unsigned int,
>>> vtkClientServerStream const&, bool)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54cdcae44f : vtkSMViewProxy::Update()
>>> [(libvtkPVServerManagerRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cdf2f6f7 :
>>> vtkSMAnimationScene::TickInternal(double, double,
>>> double) [(libvtkPVAnimation-pv4.3.so.1) ???:-1]
>>> 0x7f54cf415cab : vtkAnimationCue::Tick(double, double,
>>> double) [(libvtkCommonCore-pv4.3.so.1) ???:-1]
>>> 0x7f54cdf23268 : vtkAnimationPlayer::Play()
>>> [(libvtkPVAnimation-pv4.3.so.1) ???:-1]
>>> 0x7f54d7851619 :
>>> vtkSMAnimationSceneCommand(vtkClientServerInterpreter*,
>>> vtkObjectBase*, char const*, vtkClientServerStream
>>> const&, vtkClientServerStream&, void*)
>>> [(libvtkPVServerManagerApplication-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e135e0 :
>>> vtkClientServerInterpreter::CallCommandFunction(char
>>> const*, vtkObjectBase*, char const*,
>>> vtkClientServerStream const&, vtkClientServerStream&)
>>> [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e18393 :
>>> vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream
>>> const&, int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16832 :
>>> vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream
>>> const&, int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16ced :
>>> vtkClientServerInterpreter::ProcessStream(vtkClientServerStream
>>> const&) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b436d4 :
>>> vtkSIProperty::ProcessMessage(vtkClientServerStream&)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b4377e :
>>> vtkSIProperty::Push(paraview_protobuf::Message*, int)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b4459e :
>>> vtkSIProxy::Push(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b2884a :
>>> vtkPVSessionCore::PushStateInternal(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b27484 :
>>> vtkPVSessionCore::PushState(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b2514d :
>>> vtkPVSessionBase::PushState(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5d859b7 : vtkSMProxy::UpdateProperty(char const*,
>>> int) [(libvtkPVServerManagerCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d6d8aa07 : pqVCRController::onPlay()
>>> [(libvtkpqComponents-pv4.3.so.1) ???:-1]
>>> 0x7f54cfa98258 : QMetaObject::activate(QObject*,
>>> QMetaObject const*, int, void**) [(libQtCore.so.4) ???:-1]
>>> 0x7f54d01102f2 : QAction::triggered(bool)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d0111710 : QAction::activate(QAction::ActionEvent)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d04fd514 : ??? [(???) ???:-1]
>>> 0x7f54d04fd7ab :
>>> QAbstractButton::mouseReleaseEvent(QMouseEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d05d15ea :
>>> QToolButton::mouseReleaseEvent(QMouseEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d0175ac1 : QWidget::event(QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d04fca3f : QAbstractButton::event(QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d05d422d : QToolButton::event(QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d011759e :
>>> QApplicationPrivate::notify_helper(QObject*, QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d011e533 : QApplication::notify(QObject*, QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54cfa802f3 :
>>> QCoreApplication::notifyInternal(QObject*, QEvent*)
>>> [(libQtCore.so.4) ???:-1]
>>> 0x7f54d011a656 :
>>> QApplicationPrivate::sendMouseEvent(QWidget*,
>>> QMouseEvent*, QWidget*, QWidget*, QWidget**,
>>> QPointer<QWidget>&, bool) [(libQtGui.so.4) ???:-1]
>>> 0x7f54d019ca94 : ??? [(???) ???:-1]
>>> 0x7f54d019b877 : QApplication::x11ProcessEvent(_XEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d01c4805 : ??? [(???) ???:-1]
>>> 0x7f54cfa7f375 :
>>> QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
>>> [(libQtCore.so.4) ???:-1]
>>> 0x7f54cfa7f748 :
>>> QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
>>> [(libQtCore.so.4) ???:-1]
>>> 0x7f54cfa8414b : QCoreApplication::exec()
>>> [(libQtCore.so.4) ???:-1]
>>> 0x407785 : main [(paraview) ???:-1]
>>> 0x7f54ce06cec5 : __libc_start_main [(libc.so.6) ???:-1]
>>> 0x4074da : QMainWindow::event(QEvent*) [(paraview) ???:-1]
>>> =========================================================
>>>
>>> Thanks,
>>>
>>> Sergi Mateo
>>> sergi.mateo.bellido at gmail.com
>>> <mailto:sergi.mateo.bellido at gmail.com>
>>>
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>>>
>>> --
>>> Cory Quammen
>>> R&D Engineer
>>> Kitware, Inc.
>>
>>
>>
>>
>> --
>> Cory Quammen
>> R&D Engineer
>> Kitware, Inc.
>
>
>
>
> --
> Cory Quammen
> R&D Engineer
> Kitware, Inc.
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