[Paraview] segfault playing a simulation

Thu Jul 9 11:00:54 EDT 2015

Hi Sergi,

I played with your data set a little but haven't found what is wrong. I am
suspicious of two things in the data file, the extent and the offset in the
second data array (it looks too small).

What are the dimensions of your grid? Note that the whole extent upper
values need to be the dimension - 1, e.g., for a 300x300x300 grid, the
whole extent should be 0 299 0 299 0 299.

Thanks,
Cory

On Wed, Jul 1, 2015 at 12:27 PM, Sergi Mateo Bellido <
sergi.mateo.bellido at gmail.com> wrote:

>  Hi Cory,
>
> Thanks for your time. These data files have been produced by a software
> that I'm developing with some colleagues.
>
> Best regards,
>
> Sergi
>
>
> On 07/01/2015 03:59 PM, Cory Quammen wrote:
>
> Sergi,
>
>  I can confirm the crash you are seeing in the same location in the code.
> I'm looking for the cause.
>
>  What software produced these data files?
>
>  Thanks,
> Cory
>
> On Wed, Jul 1, 2015 at 1:59 AM, Sergi Mateo Bellido <
> sergi.mateo.bellido at gmail.com> wrote:
>
>>  Hi Cory,
>>
>> Thanks for your answer. I reproduced the segfault in two different ways,
>> but it's always after loading a data set:
>> - After loading a data set, I tried to play the simulation ->segfault
>> - After loading a data set, I tried to filter some fields from the model
>> (Pointer array status). As soon as I clicked the 'apply' button, paraview
>> crashed with a segfault.
>>
>> Thanks,
>> Sergi
>>
>>
>>
>> On 06/30/2015 06:21 AM, Cory Quammen wrote:
>>
>> Hi Sergi,
>>
>>  Could you clarify when you are seeing this crash? Is it right when
>> starting ParaView or when first loading a data set?
>>
>>  Thanks,
>> Cory
>>
>> On Tue, Jun 23, 2015 at 8:55 AM, Sergi Mateo Bellido <
>> sergi.mateo.bellido at gmail.com> wrote:
>>
>>>  Hi,
>>>
>>> I'm trying to reproduce a simulation with ParaView 4.3.1 and it always
>>> crashes when I start it. You can find the backtrace below:
>>>
>>> =========================================================
>>> Process id 6681 Caught SIGSEGV at 0x925b124 address not mapped to object
>>> Program Stack:
>>> WARNING: The stack trace will not use advanced capabilities because this
>>> is a release build.
>>> 0x7f54ce081d40 : ??? [(???) ???:-1]
>>> 0x7f54ce19caf6 : ??? [(???) ???:-1]
>>> 0x7f54cb123736 : vtkXMLPStructuredDataReader::CopySubExtent(int*, int*,
>>> long long*, int*, int*, long long*, int*, int*, vtkDataArray*,
>>> vtkDataArray*) [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb12389f :
>>> vtkXMLPStructuredDataReader::CopyArrayForPoints(vtkDataArray*,
>>> vtkDataArray*) [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb11cc1f : vtkXMLPDataReader::ReadPieceData()
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb11ca14 : vtkXMLPDataReader::ReadPieceData(int)
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb124d7a : vtkXMLPStructuredDataReader::ReadXMLData()
>>> [(libvtkIOXML-pv4.3.so.1) ???:-1]
>>> 0x7f54cb1280eb : vtkXMLReader::RequestData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*) [(libvtkIOXML-pv4.3.so.1)
>>> ???:-1]
>>> 0x7f54cb1273b6 : vtkXMLReader::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*) [(libvtkIOXML-pv4.3.so.1)
>>> ???:-1]
>>> 0x7f54cd6200f9 : vtkFileSeriesReader::RequestData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkPVVTKExtensionsDefault-pv4.3.so.1) ???:-1]
>>> 0x7f54cd61f07f : vtkFileSeriesReader::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkPVVTKExtensionsDefault-pv4.3.so.1) ???:-1]
>>> 0x7f54d2706204 : vtkExecutive::CallAlgorithm(vtkInformation*, int,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d27016cc : vtkDemandDrivenPipeline::ExecuteData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2700201 : vtkCompositeDataPipeline::ExecuteData(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2704067 :
>>> vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271d959 :
>>> vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d26fe387 :
>>> vtkCompositeDataPipeline::ForwardUpstream(vtkInformation*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2704010 :
>>> vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271d959 :
>>> vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d26fe387 :
>>> vtkCompositeDataPipeline::ForwardUpstream(vtkInformation*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d2704010 :
>>> vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271d959 :
>>> vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
>>> vtkInformationVector**, vtkInformationVector*)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d27035ae : vtkDemandDrivenPipeline::UpdateData(int)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54d271e87f : vtkStreamingDemandDrivenPipeline::Update(int)
>>> [(libvtkCommonExecutionModel-pv4.3.so.1) ???:-1]
>>> 0x7f54cd98fa7f :
>>> vtkPVDataRepresentation::ProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformation*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd973d79 :
>>> vtkGeometryRepresentation::ProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformation*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd975d71 :
>>> vtkGeometryRepresentationWithFaces::ProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformation*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd9bd388 :
>>> vtkPVView::CallProcessViewRequest(vtkInformationRequestKey*,
>>> vtkInformation*, vtkInformationVector*)
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd9bd552 : vtkPVView::Update()
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cd9acb78 : vtkPVRenderView::Update()
>>> [(libvtkPVClientServerCoreRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54d780ac30 : vtkPVRenderViewCommand(vtkClientServerInterpreter*,
>>> vtkObjectBase*, char const*, vtkClientServerStream const&,
>>> vtkClientServerStream&, void*)
>>> [(libvtkPVServerManagerApplication-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e135e0 : vtkClientServerInterpreter::CallCommandFunction(char
>>> const*, vtkObjectBase*, char const*, vtkClientServerStream const&,
>>> vtkClientServerStream&) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e18393 :
>>> vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream
>>> const&, int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16832 :
>>> vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream const&,
>>> int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16ced :
>>> vtkClientServerInterpreter::ProcessStream(vtkClientServerStream const&)
>>> [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b26cec :
>>> vtkPVSessionCore::ExecuteStreamInternal(vtkClientServerStream const&, bool)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b26958 : vtkPVSessionCore::ExecuteStream(unsigned int,
>>> vtkClientServerStream const&, bool)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b25203 : vtkPVSessionBase::ExecuteStream(unsigned int,
>>> vtkClientServerStream const&, bool)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54cdcae44f : vtkSMViewProxy::Update()
>>> [(libvtkPVServerManagerRendering-pv4.3.so.1) ???:-1]
>>> 0x7f54cdf2f6f7 : vtkSMAnimationScene::TickInternal(double, double,
>>> double) [(libvtkPVAnimation-pv4.3.so.1) ???:-1]
>>> 0x7f54cf415cab : vtkAnimationCue::Tick(double, double, double)
>>> [(libvtkCommonCore-pv4.3.so.1) ???:-1]
>>> 0x7f54cdf23268 : vtkAnimationPlayer::Play()
>>> [(libvtkPVAnimation-pv4.3.so.1) ???:-1]
>>> 0x7f54d7851619 : vtkSMAnimationSceneCommand(vtkClientServerInterpreter*,
>>> vtkObjectBase*, char const*, vtkClientServerStream const&,
>>> vtkClientServerStream&, void*)
>>> [(libvtkPVServerManagerApplication-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e135e0 : vtkClientServerInterpreter::CallCommandFunction(char
>>> const*, vtkObjectBase*, char const*, vtkClientServerStream const&,
>>> vtkClientServerStream&) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e18393 :
>>> vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream
>>> const&, int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16832 :
>>> vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream const&,
>>> int) [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d4e16ced :
>>> vtkClientServerInterpreter::ProcessStream(vtkClientServerStream const&)
>>> [(libvtkClientServer-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b436d4 : vtkSIProperty::ProcessMessage(vtkClientServerStream&)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b4377e : vtkSIProperty::Push(paraview_protobuf::Message*, int)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b4459e : vtkSIProxy::Push(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b2884a :
>>> vtkPVSessionCore::PushStateInternal(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b27484 :
>>> vtkPVSessionCore::PushState(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5b2514d :
>>> vtkPVSessionBase::PushState(paraview_protobuf::Message*)
>>> [(libvtkPVServerImplementationCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d5d859b7 : vtkSMProxy::UpdateProperty(char const*, int)
>>> [(libvtkPVServerManagerCore-pv4.3.so.1) ???:-1]
>>> 0x7f54d6d8aa07 : pqVCRController::onPlay()
>>> [(libvtkpqComponents-pv4.3.so.1) ???:-1]
>>> 0x7f54cfa98258 : QMetaObject::activate(QObject*, QMetaObject const*,
>>> int, void**) [(libQtCore.so.4) ???:-1]
>>> 0x7f54d01102f2 : QAction::triggered(bool) [(libQtGui.so.4) ???:-1]
>>> 0x7f54d0111710 : QAction::activate(QAction::ActionEvent)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d04fd514 : ??? [(???) ???:-1]
>>> 0x7f54d04fd7ab : QAbstractButton::mouseReleaseEvent(QMouseEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d05d15ea : QToolButton::mouseReleaseEvent(QMouseEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d0175ac1 : QWidget::event(QEvent*) [(libQtGui.so.4) ???:-1]
>>> 0x7f54d04fca3f : QAbstractButton::event(QEvent*) [(libQtGui.so.4) ???:-1]
>>> 0x7f54d05d422d : QToolButton::event(QEvent*) [(libQtGui.so.4) ???:-1]
>>> 0x7f54d011759e : QApplicationPrivate::notify_helper(QObject*, QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d011e533 : QApplication::notify(QObject*, QEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54cfa802f3 : QCoreApplication::notifyInternal(QObject*, QEvent*)
>>> [(libQtCore.so.4) ???:-1]
>>> 0x7f54d011a656 : QApplicationPrivate::sendMouseEvent(QWidget*,
>>> QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d019ca94 : ??? [(???) ???:-1]
>>> 0x7f54d019b877 : QApplication::x11ProcessEvent(_XEvent*)
>>> [(libQtGui.so.4) ???:-1]
>>> 0x7f54d01c4805 : ??? [(???) ???:-1]
>>> 0x7f54cfa7f375 :
>>> QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
>>> [(libQtCore.so.4) ???:-1]
>>> 0x7f54cfa7f748 : QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
>>> [(libQtCore.so.4) ???:-1]
>>> 0x7f54cfa8414b : QCoreApplication::exec() [(libQtCore.so.4) ???:-1]
>>> 0x407785 : main [(paraview) ???:-1]
>>> 0x7f54ce06cec5 : __libc_start_main [(libc.so.6) ???:-1]
>>> 0x4074da : QMainWindow::event(QEvent*) [(paraview) ???:-1]
>>> =========================================================
>>>
>>> Thanks,
>>>
>>> Sergi Mateo
>>> sergi.mateo.bellido at gmail.com
>>>
>>> _______________________________________________
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>>>
>>
>>
>>  --
>> Cory Quammen
>> R&D Engineer
>> Kitware, Inc.
>>
>>
>>
>
>
>  --
> Cory Quammen
> R&D Engineer
> Kitware, Inc.
>
>
>

-- 
Cory Quammen
R&D Engineer
Kitware, Inc.
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