[Paraview] Cannot get parallelism working in paraview 4.2.0 on our clusters (works with 4.1.0)

[Marcus D. Hanwell]

Hi,

I think I know the cause, the PDB reader was modified to produce a
vtkMolecule in addition to the vtkPolyData I think it has always produced.
It looks like there is a packaging issue, and the XML file cannot be found.
We should probably just statically compile the file in, or convert it to a
header as the data is pretty static - atomic radii, colors, etc.

Marcus

On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci <berk.geveci at kitware.com>
wrote:

> Hey Rich,
>
> Can you send me the dataset?
>
> Best,
> -berk
>
> On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>
>>  Hi,
>> I have recently compiled paraview 4.2.0 on our clusters in the same way I
>> compile with 4.1.0 and am getting some errors.
>> I run pvserver in parallel, and it does not give any weird outputs.
>> I connect with it from my desktop (Mac OS X).  I can see in the desktop
>> GUI that four remote servers are connected.
>> I open up a PDB dataset and it is different.  I see two “Output” objects
>> in the pipeline browser.  This is different than the behavior in 4.1.0.
>>
>>
>>  I click Apply and get smacked in the face with an error dialog.
>>
>>  ERROR: In
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
>> line 68
>> vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml.
>> Checked
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
>> and
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry
>>
>>
>>  ERROR: In
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx,
>> line 382
>> vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream
>> set.
>>
>>
>>  ERROR: In
>> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
>> line 710
>> vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of
>> algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but
>> is not optional.
>>
>>
>>   I’m unable to color by process scalar ID, or more precisely, the
>> Filter seems to get applied but the color does not change.  Appears all
>> work is done on process 0.
>>
>>  Something is vewwwy scwewwy.
>>
>>  Help?
>>
>>
>>  --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div.,
>> Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>>
>>
>>
>>
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