<div dir="ltr"><div><div>Hi,<br><br></div>I think I know the cause, the PDB reader was modified to produce a vtkMolecule in addition to the vtkPolyData I think it has always produced. It looks like there is a packaging issue, and the XML file cannot be found. We should probably just statically compile the file in, or convert it to a header as the data is pretty static - atomic radii, colors, etc.<br><br></div>Marcus<br><div><div><div><div><br><div class="gmail_extra"><div class="gmail_quote">On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci <span dir="ltr"><<a href="mailto:berk.geveci@kitware.com" target="_blank">berk.geveci@kitware.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hey Rich,<div><br></div><div>Can you send me the dataset?</div><div><br></div><div>Best,</div><div>-berk</div></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div class="h5">On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich <span dir="ltr"><<a href="mailto:cook47@llnl.gov" target="_blank">cook47@llnl.gov</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
<div style="word-wrap:break-word">
Hi,
<div>I have recently compiled paraview 4.2.0 on our clusters in the same way I compile with 4.1.0 and am getting some errors. </div>
<div>I run pvserver in parallel, and it does not give any weird outputs. </div>
<div>I connect with it from my desktop (Mac OS X). I can see in the desktop GUI that four remote servers are connected. </div>
<div>I open up a PDB dataset and it is different. I see two “Output” objects in the pipeline browser. This is different than the behavior in 4.1.0. </div>
<div><br>
</div>
<div><img src="cid:914AC27C-18D5-42AC-95B6-7668C8B7059B@llnl.gov" height="229" width="367"></div>
<div><br>
</div>
<div>I click Apply and get smacked in the face with an error dialog. </div>
<div><br>
</div>
<div>
<div style="margin:0px"><span style="font-family:'Courier';font-size:13pt;color:#800000">ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx,
line 68</span></div>
<div style="margin:0px"><span style="font-family:'Courier';font-size:13pt;color:#800000">vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml. Checked /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry
and /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry</span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div style="margin:0px"><span style="font-family:'Courier';font-size:13pt;color:#800000">ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx, line 382</span></div>
<div style="margin:0px"><span style="font-family:'Courier';font-size:13pt;color:#800000">vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream set.</span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div style="margin:0px"><span style="font-family:'Courier';font-size:13pt;color:#800000">ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx,
line 710</span></div>
<div style="margin:0px"><span style="font-family:'Courier';font-size:13pt;color:#800000">vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but is not optional.</span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
</div>
<div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<span style="color:rgb(0,0,0);font-family:Monaco;font-size:18px">I’m unable to color by process scalar ID, or more precisely, the Filter seems to get applied but the color does not change. Appears all work is done on process 0. </span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<span style="color:rgb(0,0,0);font-family:Monaco;font-size:18px"><br>
</span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<span style="color:rgb(0,0,0);font-family:Monaco;font-size:18px">Something is vewwwy scwewwy. </span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<span style="color:rgb(0,0,0);font-family:Monaco;font-size:18px"><br>
</span></div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<span style="color:rgb(0,0,0);font-family:Monaco;font-size:18px">Help? </span></div><span><font color="#888888">
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div style="margin:0px;font-family:Courier;font-size:13pt;color:rgb(128,0,0)">
<br>
</div>
<div><span style="border-collapse:separate;font-size:13px;border-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><span style="border-collapse:separate;color:rgb(0,0,0);font-family:Monaco;font-size:13px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px">
<div>-- </div>
<div>✐Richard Cook </div>
<div>✇ Lawrence Livermore National Laboratory</div>
<div>Bldg-453 Rm-4024, Mail Stop L-557 </div>
<div>7000 East Avenue, Livermore, CA, 94550, USA</div>
<div>☎ (office) <a href="tel:%28925%29%20423-9605" value="+19254239605" target="_blank">(925) 423-9605</a> </div>
<div>☎ (fax) <a href="tel:%28925%29%20423-6961" value="+19254236961" target="_blank">(925) 423-6961</a></div>
<div>---</div>
<div>Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.</div>
<div>(opinions expressed herein are mine and not those of LLNL)</div>
<br>
</span></span></span></span></span></span></span><br>
</span></div>
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</font></span></div>
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