[Paraview] compile error paraview 3.10 with libvtkhdf5

Thu Feb 3 14:00:27 EST 2011

No, I am just making with 'make' on a single cpu. Still haven't found the
clue unfortunately. Perperhaps rebuilding the hdf5 lib. I have by the way a
different gcc compiler  which I use to build paraview than the default gcc
compiler, and I saw that the kernel was build with a different gcc compiler,
so probably also the system libraries. That could cause problems of course.
Well, thanks for the comments anyway
Regards

2011/2/3 Aurélien Marsan <aur.marsan at gmail.com>

> Maybe I'm completely out of context.... but maybe not :
> Are you trying to build with multiple tasks ? I mean do you use : "make -j"
> ?
>
> I can't remember perfectly, but it seems to me that I had something wrong,
> maybe with hdf5, when using make -j ... (building on windows using
> msys-mingw)
>
> 2011/2/3 Eelco van Vliet <eelcovv at gmail.com>
>
> Unfortunately this does noet work, I got all kind of error message that it
>> can not find HDF include directory etc. Since I am not administrator I can
>> not install it in the default directories. I tried to compile the hdf lib
>> myself, but this didn't work as well. Beside, hdf is delivered by the
>> distribution right ?
>> Well, if there is any other suggesting ?  I am now trying with
>> VTK_USE_SYSTEM_HDF5 = 0 again
>>
>> The error message I got now ]
>>   1%] Built target H5make_libsettings
>>
>> Linking C shared library ../../../../bin/libvtkhdf5.so
>> CMakeFiles/vtkhdf5.dir/H5checksum.c.o: In function `gnu_dev_major':
>> /usr/include/sys/sysmacros.h:43: multiple definition of `gnu_dev_major'
>> CMakeFiles/vtkhdf5.dir/H5.c.o:/usr/include/sys/sysmacros.h:43: first
>> defined here
>> CMakeFiles/vtkhdf5.dir/H5checksum.c.o: In function `gnu_dev_minor':
>> /usr/include/sys/sysmacros.h:49: multiple definition of `gnu_dev_minor'
>> CMakeFiles/vtkhdf5.dir/H5.c.o:/usr/include/sys/sysmacros.h:49: first
>> defined here
>> CMakeFiles/vtkhdf5.dir/H5checksum.c.o: In function `gnu_dev_makedev':
>> /usr/include/sys/sysmacros.h:55: multiple definition of `gnu_dev_makedev'
>> CMakeFiles/vtkhdf5.dir/H5.c.o:/usr/include/sys/sysmacros.h:55: first
>> defined here
>> CMakeFiles/vtkhdf5.dir/H5checksum.c.o: In function `stat':
>>  etc
>> CMakeFiles/vtkhdf5.dir/__/H5Tinit.c.o: In function `mknod':
>> /usr/include/sys/stat.h:465: multiple definition of `mknod'
>> CMakeFiles/vtkhdf5.dir/H5.c.o:/usr/include/sys/stat.h:465: first defined
>> here
>> collect2: ld returned 1 exit status
>> make[2]: *** [bin/libvtkhdf5.so.1.8.5] Error 1
>> make[1]: *** [VTK/Utilities/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/all] Error
>> 2
>> make: *** [all] Error 2
>>
>>
>>
>> Regards
>> Eelco
>>
>>
>>
>> On Thu, Feb 3, 2011 at 4:28 PM, David Partyka <david.partyka at kitware.com>wrote:
>>
>>> Sorry yes, libhdf5 is what you can try with VTK_USE_SYSTEM_HDF5.
>>>
>>>
>>> On Thu, Feb 3, 2011 at 10:07 AM, Eelco van Vliet <eelcovv at gmail.com>wrote:
>>>
>>>> Mmm,
>>>>
>>>> I can't find libvtkhdf, but only
>>>>
>>>> /usr/lib64/libhdf5.so.6.0.1
>>>>
>>>> Is this the same ?
>>>>
>>>>
>>>>
>>>> On Thu, Feb 3, 2011 at 4:04 PM, Eelco van Vliet <eelcovv at gmail.com>wrote:
>>>>
>>>>> Hi David,
>>>>>
>>>>> Distro: Scientific Linux SL release 5.2 (Boron) 64-bit version
>>>>> GCC: gcc (OpenFOAM) 4.3.3
>>>>>
>>>>> I don't know where I can find libvtkhdf. Should I build it myself.
>>>>> Where can I get it ?
>>>>>
>>>>> Regards,
>>>>>
>>>>> Eelco
>>>>>
>>>>>
>>>>> On Thu, Feb 3, 2011 at 2:53 PM, David Partyka <
>>>>> david.partyka at kitware.com> wrote:
>>>>>
>>>>>> That is strange, can you tell us what distro/gcc version you're using?
>>>>>> You can't turn hdf5 off but you could install your distros hdf5/build it
>>>>>> yourself and then turn on VTK_USE_SYSTEM_HDF5.
>>>>>>
>>>>>>   On Thu, Feb 3, 2011 at 8:41 AM, Eelco van Vliet <eelcovv at gmail.com>wrote:
>>>>>>
>>>>>>>  Dear all.
>>>>>>>
>>>>>>> I have been trying to compile the new 3.10 paraview source under my
>>>>>>> linux system, but got the following complaint:
>>>>>>>
>>>>>>> Linking C shared library ../../../../bin/libvtkhdf5.so
>>>>>>> CMakeFiles/vtkhdf5.dir/H5checksum.c.o: In function `gnu_dev_major':
>>>>>>>
>>>>>>> And from there many more errors related to the libvtkhdf5 library.
>>>>>>> Any other people who have experienced this error ? Do I need hdf5? Can I
>>>>>>> switch it off ?
>>>>>>> Any hints appreciated.
>>>>>>>
>>>>>>> Regards,
>>>>>>>
>>>>>>> Eelco
>>>>>>>
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>>>>
>>>
>>
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